CsaV3_3G023240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 20793055 .. 20796492 (-)
RNA-Seq Expression	CsaV3_3G023240
Synteny	CsaV3_3G023240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACAATCTCTTTTTTTTCTCCTAAAATTACACTTTTGACCTTATGTAAATAAAAAATAAATAAATAACCCGTTGAAGCAGTCAAAGTCTAAAGTGGTCGAAGTCTGATGTAAATAACAATGCAAACTAAAGTGGCCGAAGTGTGATGTGCTTCTAAAGCAACGCAAAATAATGGCGATATTCAAAGAAGATGAAGGACTAATAGTGGTTTGCCTCGATGTGGTTATGAAGGAATCTGCTAAGAAGGTGAACAAATGCTTTCAAATCGTTTTCAAAATAGATTTAGGGTTTCGAATGAAGAATGTGATTACCTGTCGGATTCCAATGTGATTACCTGTAGAGATTTAAATTCATGACGTGGAGCTTCACAATTATAATGACCAACGTTTCTATCTAAGTAGAGGTCATTAACTTTAGACAAAAGATCTCAATGGATACAAAATGAATATAAGACATTTGAAAAACATACAATCGAGGAAAAACAACTTTAAACAGGCCCGATTTCAAACAACTAAAACTTTAAAAGTATAGTTTGTAAACTAAGTTCCAACATAATGTTTTAAACATAAAAAACATAAAGCGGAATCAAAATAAAGATGTTCCCTATGGCAATCACACTTCCTTCCTGCCCCTCGCCGGTTTGCCACTCTTGTTACCTTTGCCTGAAAAATTAAACATATAGAGGTGAATATAAACATACTCAGTAAGAGACCCACTACTCGTCGAAAAATAAATTGTTAACGTCCTATTGGGGTACCCTGCACGGTCACTGTATTGTGATCCCGTAGGATACACATATCAGTCTAATGTCTCAAGGGACGTCTAATGTCTCAAGGGACGTCTAATGTCTCAAGGGACGTACATTTAAGTATAGTGTTCTAGATAGTCTAATCCTGCTCCAGAAGGATGCATAATAATTGGTGATCTCGTACGACACCTACAAGGTACTCATCCCAATAAAAGCTAACAATTTTTCCCTCTGTCCATTCTAAACCTCTTAACATTCATTTATAACACCATTCAACTACTTCAACATATATAATTCTCTAACTTAAAGTTCTAACGGTCAACCTATCTCACTTTAGTCCAGTGACTGTTGGTAACATTTTAATACGACAGTCAATCAAACCACAAAGTCATAAATTTTATGCAAAAATCCTTCGACTAATTCCAACAACCGACTCCTAAACATAATTAAATAAAAAAAAATTAACATTTTTTTAAATAGCATCATCTATACAACTCATCCAAAAGTGAATTGTCACTCACCACCTCAATTTTACCCAAAACTTCCACCCAACGATTCACAGCAAGGTAGGAGCGATGATCGAAGAAAAGTCACGCACGATACGCAGAGAACCCGCGCGGTTGAGAGGAGAAACGCACACTGTCTCACGATCGGCAGATGAACGGACGCGGCGGCGCTTTGCAGAACGGGGACAGATCGGCGTAAAGAAAGGTGGACGGCTCGATCGAAGGGGTTATGCGTCGAGGAGTCACGCGGAGGTTGCGCGAAATGGAACGGACGACTGGAAGAAAAACAGATTTGAGGGAGACGTTTCGGTTCCAATGGAAACAGAGCAGACGACGGCTGGTTCCACGGTGAAGACCGGCGCGGACGTAGCAGGCACGACAGTTGGGGCTTCACGAACGGCGAGTGGCTCGTCTGTGGCAGATGTGCACGGTAACGGCTTTACCGACGGAAAGAGGGGCGCGAACAGGACGAATCACTGGTTGCACTTAACGATTGAAGACCGAACGCCGAAGAGGATGAACGGATGGCGAGTTCGATTCGGTTTTGACTGGACGAGGGAGAGACAAACGGTGACAGCAACGACTTGAGGCACGACTGTTGAAGACAAACGAGAACAGAAAAGAAAAGAAATTTGGTGGTCGATTGGAGGTAGGTTACGGGAAGAAGAAGAAGGAGAAAGAAGATGGAGGGGGAGAGGAAGTCAGCGTGAGGTTGAAGGGTGGGCGATGACCGTGGATCTGAACGAAAAAGAAAGAGGAAGAAGATGGGGGATTATGAGAAATAGGATAATTTGGAAGGATGTAAGGAGTTTTGAGATGAATTTTAAAAAAGATGTACAAATTAGTTGGAAAAAGTCTATATTACCCTCAAGTTAAAAAATATCCTAAAATCAATGTATGAATCCTCTCTTCTCCTTCTCCTTCTCCCTTCGTTTTTCCACTTTCTAAAAATATTTCATTTTTCTCTCATCCCTCCCTCTGGTATTCCATTTTCCCTCACTTTCACAAAATTTCCTTTTTCTTCCTTTTCCATTCTTTAATTCGTTTTCTTGAAATTCCTTTCTCAAGCTCCTCCCATGGTCTTCCTTCGGCCTTTGAAAACCATGTCGTTCCTTATCACCTCATTCTTCGCCTTTTTCAAGCTTCTTCCTTTCTCGAAATAAAATCCTCTTTCATAGAAGTCATTTAAGCTCTCACAGCTCGCTGTCATGGTCGTCTCCCACTCTGTATCATCTTCGATATCTTTCTTAGTTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAATGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAAACCTAATTGCTGACTAACATCGCTGAAGCAAATGGTGAAGATGGTTGGTCGATTTTTCAAAATCTGTCTATTTTAGAAACTTGCAGGTTGATACTGTAGCTAAAATTGAGCAATAATTTAAAAAGTTTGGTAGATTTCTACCTAATGATGTGTATTTATTAGGTCTTGGAGGCCCTCGCTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGGAAGGGAAAGAGGAAGAGGTAGTTACCAGTCAGATGCTCCTAGGGGACGGTTTGGTTCTCATAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCAACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCGGTGGGTTACCACAAGGTTCAATAGTAATGTTAATTTGTGGGGAATTGATTATCATGATAAGATGGTACTTTTCCCCCTTAGATGGTTTTTAAGATGCAATTCAAGTGGAAAATTTTTGGCATTTCAAGTACAAGCACTAGTTAGACAATGGGAGAGAAATAGACTTGAGAGATGAAGACCCTTTTCATTAAATTTTACCCTTTTGTAGTAGTTCCGTAGTCATTAGGTGAATACTGTTGCCATTTTACAATCAAATAATGTATAATTGAGTGAGCATCTTGCCAAATAAACGAACAATTTAGATCCTTGAATGTCAGTTTTTTCATCATGCTTTGTAGTGAGATTTCTTTAATCAAAATCAATGAACAACTTGATTTATGAGA

mRNA sequence

ATGATCGAAGAAAAGTCACGCACGATACGCAGAGAACCCGCGCGGTTGAGAGGAGAAACGCACACTGTCTCACGATCGGCAGATGAACGGACGCGGCGGCGCTTTGCAGAACGGGGACAGATCGGCGTAAAGAAAGGTGGACGGCTCGATCGAAGGGGTTATGCGTCGAGGAGTCACGCGGAGGTTGCGCGAAATGGAACGGACGACTGGAAGAAAAACAGATTTGAGGGAGACGTTTCGGTTCCAATGGAAACAGAGCAGACGACGGCTGGTTCCACGGTGAAGACCGGCGCGGACGTAGCAGGCACGACAGTTGGGGCTTCACGAACGGCGAGTGGCTCGTCTGTGGCAGATGTGCACGGTAACGGCTTTACCGACGGAAAGAGGGGCGCGAACAGGACGAATCACTGGTTGCACTTAACGATTGAAGACCGAACGCCGAAGAGGATGAACGGATGGCGAGTTCGATTCGGTTTTGACTGGACGAGGGAGAGACAAACGGTGACAGCAACGACTTGA

Coding sequence (CDS)

ATGATCGAAGAAAAGTCACGCACGATACGCAGAGAACCCGCGCGGTTGAGAGGAGAAACGCACACTGTCTCACGATCGGCAGATGAACGGACGCGGCGGCGCTTTGCAGAACGGGGACAGATCGGCGTAAAGAAAGGTGGACGGCTCGATCGAAGGGGTTATGCGTCGAGGAGTCACGCGGAGGTTGCGCGAAATGGAACGGACGACTGGAAGAAAAACAGATTTGAGGGAGACGTTTCGGTTCCAATGGAAACAGAGCAGACGACGGCTGGTTCCACGGTGAAGACCGGCGCGGACGTAGCAGGCACGACAGTTGGGGCTTCACGAACGGCGAGTGGCTCGTCTGTGGCAGATGTGCACGGTAACGGCTTTACCGACGGAAAGAGGGGCGCGAACAGGACGAATCACTGGTTGCACTTAACGATTGAAGACCGAACGCCGAAGAGGATGAACGGATGGCGAGTTCGATTCGGTTTTGACTGGACGAGGGAGAGACAAACGGTGACAGCAACGACTTGA

Protein sequence

MIEEKSRTIRREPARLRGETHTVSRSADERTRRRFAERGQIGVKKGGRLDRRGYASRSHAEVARNGTDDWKKNRFEGDVSVPMETEQTTAGSTVKTGADVAGTTVGASRTASGSSVADVHGNGFTDGKRGANRTNHWLHLTIEDRTPKRMNGWRVRFGFDWTRERQTVTATT*

Homology

[Close]

BLAST of CsaV3_3G023240 vs. NCBI nr
Match: KGN58045.2 (hypothetical protein Csa_011249 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MIEEKSRTIRREPARLRGETHTVSRSADERTRRRFAERGQIGVKKGGRLDRRGYASRSHA 60
           MIEEKSRTIRREPARLRGETHTVSRSADERTRRRFAERGQIGVKKGGRLDRRGYASRSHA
Sbjct: 1   MIEEKSRTIRREPARLRGETHTVSRSADERTRRRFAERGQIGVKKGGRLDRRGYASRSHA 60

Query: 61  EVARNGTDDWKKNRFEGDVSVPMETEQTTAGSTVKTGADVAGTTVGASRTASGSSVADVH 120
           EVARNGTDDWKKNRFEGDVSVPMETEQTTAGSTVKTGADVAGTTVGASRTASGSSVADVH
Sbjct: 61  EVARNGTDDWKKNRFEGDVSVPMETEQTTAGSTVKTGADVAGTTVGASRTASGSSVADVH 120

Query: 121 GNGFTDGKRGANRTNHWLHLTIEDRTPKRMNGWRVRFGFDWTRERQTVTATT 173
           GNGFTDGKRGANRTNHWLHLTIEDRTPKRMNGWRVRFGFDWTRERQTVTATT
Sbjct: 121 GNGFTDGKRGANRTNHWLHLTIEDRTPKRMNGWRVRFGFDWTRERQTVTATT 172

[Close]

BLAST of CsaV3_3G023240 vs. NCBI nr
Match: KAE8648359.1 (hypothetical protein Csa_023101 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-13
Identity = 58/102 (56.86%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 2   IEEKSRTIRREPARLRGETHTVSRSADERTRRRFAERGQIGVKKGGRLDRRGYASRSHAE 61
           IEEK RTI RE ARL    H  S+S DERTRRR AERGQIGVKKGGRL+RRGYA RSHAE
Sbjct: 132 IEEKLRTIGRELARLGEGVHAASQSVDERTRRRLAERGQIGVKKGGRLERRGYAPRSHAE 191

Query: 62  VARNGTDDWKKNRFEGDVSVPMETEQTTAGSTVKTGADVAGT 104
                       R  G            AGST KTGA+ +GT
Sbjct: 192 ------------RTTG------RQNHMAAGSTAKTGAEASGT 215

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58045.2	1.2e-88	100.00	hypothetical protein Csa_011249 [Cucumis sativus]	[more]
KAE8648359.1	4.9e-13	56.86	hypothetical protein Csa_023101 [Cucumis sativus]	[more]

BLAST of CsaV3_3G023240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023240.1	CsaV3_3G023240.1	mRNA