CsaV3_3G023220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Integrase catalytic domain-containing protein
Location	chr3: 20764799 .. 20765530 (-)
RNA-Seq Expression	CsaV3_3G023220
Synteny	CsaV3_3G023220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATATCTATCCATGATGAAACAAATTACATCAAAAAATATGCAACTAGCAGGATCAACAATTTCTCAGGATGATCTAATAATCTCCTATGTCTTAGCGGGGCTTGACGCCGAATATATTTTAATTGTGTGTGATATTGAAGGTAAGAACTCTCCAACCTGGCATGATGTTTACTCAACCTTGGTAATATTCGAAACCAAACTAGTTCACTTGAATATTGTTAATACTAATGGAGATTTTGGAGATGCTAGTGCAAATTATGTTTACAGCAGGCAAACCAACAATGTTAAGAATAAGCAACAAACACTGCTTTCCAAGATATATCTCTCGAAATCATAACAACAACCACTTTAACAACAATCAATCTCAAGGAAGAGGTAACAATGTTAGTGGTGGCACATTTCAAAATCGAAGAGGCGTAGGTTCAATAACAATCATAGAGGTAATAATTCTAAACCCACTTGTCAACTCTGTGGGAAATTTGGTCATGGAGCTGCTCTTTGTTACCATCATTTTGAAGAGGAATTTGACAATCCAAGAGCAAACAACAGTCGGGTAAACAATAATACAACAACCTTTATTGCTACTCCTGAAATTTTGACAAATCCAAATTTGTTGGCAGATAGTGGAGCTGCAAACCATATCACCAATGATTATGGTAATCTTCAATTCAAAACTAAATATTATGGTACTGGTTCTTTAACGGTTGGAGATGGAACAAAATAG

mRNA sequence

ATGGCAGAATATCTATCCATGATGAAACAAATTACATCAAAAAATATGCAACTAGCAGGATCAACAATTTCTCAGGATGATCTAATAATCTCCTATGTCTTAGCGGGGCTTGACGCCGAATATATTTTAATTGTGTGTGATATTGAAGAGGAATTTGACAATCCAAGAGCAAACAACAGTCGGGTAAACAATAATACAACAACCTTTATTGCTACTCCTGAAATTTTGACAAATCCAAATTTGTTGGCAGATAGTGGAGCTGCAAACCATATCACCAATGATTATGGTAATCTTCAATTCAAAACTAAATATTATGGTACTGGTTCTTTAACGGTTGGAGATGGAACAAAATAG

Coding sequence (CDS)

ATGGCAGAATATCTATCCATGATGAAACAAATTACATCAAAAAATATGCAACTAGCAGGATCAACAATTTCTCAGGATGATCTAATAATCTCCTATGTCTTAGCGGGGCTTGACGCCGAATATATTTTAATTGTGTGTGATATTGAAGAGGAATTTGACAATCCAAGAGCAAACAACAGTCGGGTAAACAATAATACAACAACCTTTATTGCTACTCCTGAAATTTTGACAAATCCAAATTTGTTGGCAGATAGTGGAGCTGCAAACCATATCACCAATGATTATGGTAATCTTCAATTCAAAACTAAATATTATGGTACTGGTTCTTTAACGGTTGGAGATGGAACAAAATAG

Protein sequence

MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIEEEFDNPRANNSRVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK*

Homology

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BLAST of CsaV3_3G023220 vs. NCBI nr
Match: KAE8650704.1 (hypothetical protein Csa_011191 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIEEEFDNPRANNS 60
           MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIEEEFDNPRANNS
Sbjct: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIEEEFDNPRANNS 60

Query: 61  RVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK 118
           RVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK
Sbjct: 61  RVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK 117

[Close]

BLAST of CsaV3_3G023220 vs. NCBI nr
Match: KAE8637503.1 (hypothetical protein CSA_004759, partial [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIE 50
          MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIE
Sbjct: 3  MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIE 51

[Close]

BLAST of CsaV3_3G023220 vs. NCBI nr
Match: RVW22016.1 (hypothetical protein CK203_111920 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEY--------ILIVCDIEE-- 60
           M EY + +K++ + N+   G  IS DD ++ Y+LAGL + Y        + I+ ++ E  
Sbjct: 1   MGEYFAKIKRV-ADNLVAVGQPISNDDKMM-YLLAGLGSNYDPVVIPPFLKILEEVREVV 60

Query: 61  --EFDNPRANNSRVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTG 116
             E D  ++ NS+++ +    I +PE++ +P    DSGA NH+TN+ G +Q  T+Y G  
Sbjct: 61  AIEEDEAQSQNSQISAS----IDSPEMVVDPAWYVDSGATNHVTNELGRMQAATEYLGNQ 120

[Close]

BLAST of CsaV3_3G023220 vs. NCBI nr
Match: KAE8652677.1 (hypothetical protein Csa_014062 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIE 50
           M EYLSMMKQ T +NMQLAGS IS +DL  SYVL GLD EYI IVCDIE
Sbjct: 180 MTEYLSMMKQ-TLENMQLAGSPISHEDL-FSYVLVGLDVEYIPIVCDIE 226

[Close]

BLAST of CsaV3_3G023220 vs. NCBI nr
Match: KYP63249.1 (hypothetical protein KK1_017815, partial [Cajanus cajan])

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-06
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 3   EYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDI-------------- 62
           EYL  +K+I + ++   GS IS +D  I  +L GL  E+   V  I              
Sbjct: 101 EYLLEIKKIVN-SLVAVGSPISDED-HIDAILDGLPKEFDGFVTSITSRLDPYTVDETKA 160

Query: 63  -----EEEFD---------NPRANNSRVNN-----NTTTFIATPEILTNPNLLADSGAAN 117
                EE F+         NP+ANN++        + TT +ATP  + +P   +DSGA++
Sbjct: 161 LLLAREERFEKRYNQEYQNNPQANNTQFETSGYDLSETTTLATPSTVLDPLWYSDSGASH 220

[Close]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL
Match: A0A438CFS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111920 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.8e-08
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEY--------ILIVCDIEE-- 60
           M EY + +K++ + N+   G  IS DD ++ Y+LAGL + Y        + I+ ++ E  
Sbjct: 1   MGEYFAKIKRV-ADNLVAVGQPISNDDKMM-YLLAGLGSNYDPVVIPPFLKILEEVREVV 60

Query: 61  --EFDNPRANNSRVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTG 116
             E D  ++ NS+++ +    I +PE++ +P    DSGA NH+TN+ G +Q  T+Y G  
Sbjct: 61  AIEEDEAQSQNSQISAS----IDSPEMVVDPAWYVDSGATNHVTNELGRMQAATEYLGNQ 120

[Close]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL
Match: A0A803QD97 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 58  NNSRVNNNTTTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK 117
           +N++   N T F+ATPE+L +    A+SGA+NH+T++  NL  KTKY G  SLTVGDG+K
Sbjct: 460 DNNKSGQNATAFVATPEMLQDDAWYANSGASNHVTSEAANLNQKTKYNGKDSLTVGDGSK 519

[Close]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL
Match: A0A0A0LUB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   MAEYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDIE 50
           M EYLSMMKQ T +NMQLAGS IS +DL  SYVL GLD EYI IVCDIE
Sbjct: 206 MTEYLSMMKQ-TLENMQLAGSPISHEDL-FSYVLVGLDVEYIPIVCDIE 252

[Close]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL
Match: A0A151T863 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_017815 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 3   EYLSMMKQITSKNMQLAGSTISQDDLIISYVLAGLDAEYILIVCDI-------------- 62
           EYL  +K+I + ++   GS IS +D  I  +L GL  E+   V  I              
Sbjct: 101 EYLLEIKKIVN-SLVAVGSPISDED-HIDAILDGLPKEFDGFVTSITSRLDPYTVDETKA 160

Query: 63  -----EEEFD---------NPRANNSRVNN-----NTTTFIATPEILTNPNLLADSGAAN 117
                EE F+         NP+ANN++        + TT +ATP  + +P   +DSGA++
Sbjct: 161 LLLAREERFEKRYNQEYQNNPQANNTQFETSGYDLSETTTLATPSTVLDPLWYSDSGASH 220

[Close]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL
Match: A0A803NUC9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-06
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 67  TTFIATPEILTNPNLLADSGAANHITNDYGNLQFKTKYYGTGSLTVGDGTK 118
           +  IATPE+L + N  ADSGA+NH+T+D G +Q KT+Y G   +T+GDG K
Sbjct: 229 SALIATPEMLNDDNWYADSGASNHLTSDPGKIQAKTEYEGKEQITIGDGRK 279

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650704.1	3.8e-57	100.00	hypothetical protein Csa_011191 [Cucumis sativus]	[more]
KAE8637503.1	7.2e-16	100.00	hypothetical protein CSA_004759, partial [Cucumis sativus]	[more]
RVW22016.1	1.6e-07	34.65	hypothetical protein CK203_111920 [Vitis vinifera]	[more]
KAE8652677.1	1.0e-06	75.51	hypothetical protein Csa_014062 [Cucumis sativus]	[more]
KYP63249.1	5.2e-06	33.33	hypothetical protein KK1_017815, partial [Cajanus cajan]	[more]

BLAST of CsaV3_3G023220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CFS3	7.8e-08	34.65	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111920 PE=4 SV=1	[more]
A0A803QD97	1.7e-07	51.67	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A0A0LUB0	5.1e-07	75.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1	[more]
A0A151T863	2.5e-06	33.33	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_017815 PE=4 S...	[more]
A0A803NUC9	5.6e-06	52.94	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CsaV3_3G023220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023220.1	CsaV3_3G023220.1	mRNA