CsaV3_3G023100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein MNN4-like
Location	chr3: 20598693 .. 20599830 (-)
RNA-Seq Expression	CsaV3_3G023100
Synteny	CsaV3_3G023100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATGTGAGAAGCAGAAAGAAGAGAAAGAGAACAAAAAGAAAGAGAGAGAGGGAAAGAAAGGAAAAAGTACGAAAAGAGCGAGAGGAGGAAGCAAGAAGAGAAAAAGAACGAAAAGCAAAAGTAGAAGAAGAACAATGAAGGAGGGAGGAAATAGAGAAATAAGGCAAAAGACAACACGAAGGATCCTACACTCCTATCGCAGAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAAGAGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGGTATTTGAAGTCAGAGCAGACATAGTTCAAGCGTAAAACCTTAACCTTTCAAAAATGGCTGATCGTCAGGAATCTACCCTTGAATTTGCCAAAATTTTCAAATTCCTAAAGAGGAAGGAGGAATCTTCATATATCCTGCCCTAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

mRNA sequence

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

Coding sequence (CDS)

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

Protein sequence

MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSNTTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH*

Homology

[Close]

BLAST of CsaV3_3G023100 vs. NCBI nr
Match: KGN57985.1 (hypothetical protein Csa_009960 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 9.8e-115
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60
           MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM
Sbjct: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60

Query: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120
           RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN
Sbjct: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120

Query: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180
           APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN
Sbjct: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180

Query: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 222
           TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH
Sbjct: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 221

[Close]

BLAST of CsaV3_3G023100 vs. NCBI nr
Match: KAA0037951.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK19029.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-13
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114
           QE+KE +L++  ELL+KV+KV LFV+KGK K+   +E CE+LEK++E+LS +EDE     
Sbjct: 9   QERKESKLRKL-ELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDEASRPA 68

Query: 115 RLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTS 174
           +  + +     + VSK F IE G +P++  +P  L A IRA +W+ FF       G  +S
Sbjct: 69  KKEESHNE---KEVSKQFMIEKGIYPYQGTMPEFLVASIRALRWKRFFQGVEVKDGVLSS 125

Query: 175 S 176
           S
Sbjct: 129 S 125

[Close]

BLAST of CsaV3_3G023100 vs. NCBI nr
Match: KAA0053481.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-12
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 43  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLED 102
           L + +  I    QEKKE RLKEQEELLNKVDKVTL V KGK KRTQSEEICEE  K+LE+
Sbjct: 65  LKVTAHDIKALVQEKKETRLKEQEELLNKVDKVTLSVDKGKPKRTQSEEICEEF-KELEE 124

Query: 103 LSPVEDEV 111
           LSP+EDEV
Sbjct: 125 LSPLEDEV 131

[Close]

BLAST of CsaV3_3G023100 vs. NCBI nr
Match: KAA0062287.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-10
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 39  HMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEK 98
           H   + L    + + P EKKE++L+EQEELLNKVDK++L +KKGK K+T SEEI EE EK
Sbjct: 34  HNPRVKLVREFLRVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEK 93

Query: 99  KLEDLSPVEDEV 111
           KLEDLS  +DEV
Sbjct: 94  KLEDLSSFKDEV 105

[Close]

BLAST of CsaV3_3G023100 vs. NCBI nr
Match: TYK26699.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-10
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 39  HMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEK 98
           H   + L    + + P EKKE++L+EQEELLNKVDK++L +KKGK K+T SEEI EE EK
Sbjct: 34  HNPRVKLVREFLRVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEK 93

Query: 99  KLEDLSPVEDEV 111
           KLEDLS  +DEV
Sbjct: 94  KLEDLSSFKDEV 105

[Close]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL
Match: A0A0A0L7S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.7e-115
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60
           MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM
Sbjct: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60

Query: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120
           RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN
Sbjct: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120

Query: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180
           APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN
Sbjct: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180

Query: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 222
           TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH
Sbjct: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 221

[Close]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL
Match: A0A5D3D644 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00560 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-13
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114
           QE+KE +L++  ELL+KV+KV LFV+KGK K+   +E CE+LEK++E+LS +EDE     
Sbjct: 9   QERKESKLRKL-ELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDEASRPA 68

Query: 115 RLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTS 174
           +  + +     + VSK F IE G +P++  +P  L A IRA +W+ FF       G  +S
Sbjct: 69  KKEESHNE---KEVSKQFMIEKGIYPYQGTMPEFLVASIRALRWKRFFQGVEVKDGVLSS 125

Query: 175 S 176
           S
Sbjct: 129 S 125

[Close]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 43  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLED 102
           L + +  I    QEKKE RLKEQEELLNKVDKVTL V KGK KRTQSEEICEE  K+LE+
Sbjct: 65  LKVTAHDIKALVQEKKETRLKEQEELLNKVDKVTLSVDKGKPKRTQSEEICEEF-KELEE 124

Query: 103 LSPVEDEV 111
           LSP+EDEV
Sbjct: 125 LSPLEDEV 131

[Close]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL
Match: A0A5A7V5R2 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00280 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 39  HMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEK 98
           H   + L    + + P EKKE++L+EQEELLNKVDK++L +KKGK K+T SEEI EE EK
Sbjct: 34  HNPRVKLVREFLRVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEK 93

Query: 99  KLEDLSPVEDEV 111
           KLEDLS  +DEV
Sbjct: 94  KLEDLSSFKDEV 105

[Close]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL
Match: A0A5D3DT81 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003600 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 39  HMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEK 98
           H   + L    + + P EKKE++L+EQEELLNKVDK++L +KKGK K+T SEEI EE EK
Sbjct: 34  HNPRVKLVREFLRVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEK 93

Query: 99  KLEDLSPVEDEV 111
           KLEDLS  +DEV
Sbjct: 94  KLEDLSSFKDEV 105

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57985.1	9.8e-115	100.00	hypothetical protein Csa_009960 [Cucumis sativus]	[more]
KAA0037951.1	8.2e-13	42.15	protein MNN4-like [Cucumis melo var. makuwa] >TYK19029.1 protein MNN4-like [Cucu...	[more]
KAA0053481.1	7.0e-12	72.06	protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucu...	[more]
KAA0062287.1	1.3e-10	59.72	protein MNN4-like [Cucumis melo var. makuwa]	[more]
TYK26699.1	1.3e-10	59.72	protein MNN4-like [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G023100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7S0	4.7e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1	[more]
A0A5D3D644	4.0e-13	42.15	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00...	[more]
A0A5D3BSJ3	3.4e-12	72.06	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G...	[more]
A0A5A7V5R2	6.4e-11	59.72	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00...	[more]
A0A5D3DT81	6.4e-11	59.72	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00...	[more]

BLAST of CsaV3_3G023100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..99
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023100.1	CsaV3_3G023100.1	mRNA