CsaV3_3G023090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Gag/pol protein
Location	chr3: 20597692 .. 20598439 (-)
RNA-Seq Expression	CsaV3_3G023090
Synteny	CsaV3_3G023090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCGTAACGATAGATGAGCGAGTGGAAAAATTGTCGATAAAAAACAAGGCCATAAGGGAGCAAGGGGTTGAACGCTTAGAAATTGGGACAGAAGAACTGGATGAAGAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACTTGGGGCAAGCCATAATTACAAAACTAATAAAGGGGTTGGCCAAGTAA

mRNA sequence

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACTTGGGGCAAGCCATAATTACAAAACTAATAAAGGGGTTGGCCAAGTAA

Coding sequence (CDS)

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACTTGGGGCAAGCCATAATTACAAAACTAATAAAGGGGTTGGCCAAGTAA

Protein sequence

MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRKRCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK*

Homology

[Close]

BLAST of CsaV3_3G023090 vs. NCBI nr
Match: KGN57984.1 (hypothetical protein Csa_010152 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 6.4e-99
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60
           MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK
Sbjct: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60

Query: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF 120
           RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF
Sbjct: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF 120

Query: 121 TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK 180
           TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK
Sbjct: 121 TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK 180

Query: 181 LIKGLAK 188
           LIKGLAK
Sbjct: 181 LIKGLAK 187

[Close]

BLAST of CsaV3_3G023090 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 125 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 184
           KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 185 LAK 188
           LAK
Sbjct: 62  LAK 64

[Close]

BLAST of CsaV3_3G023090 vs. NCBI nr
Match: TYK05842.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-15
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 125 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 184
           KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 185 LAK 188
           LAK
Sbjct: 62  LAK 64

[Close]

BLAST of CsaV3_3G023090 vs. NCBI nr
Match: TYK15881.1 (hypothetical protein E5676_scaffold637G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-14
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 71  LEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDV 130
           LE RLSP+YE M+V+ T+                          K+R       ++RMD 
Sbjct: 71  LERRLSPKYEGMRVIDTA--------------------------KQR-------ELRMDA 130

Query: 131 VHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIK 184
           VHKFY++K+H FDLFVTIDG K +F+AKVI+ELY LP D EY  QAII+K  K
Sbjct: 131 VHKFYNVKYHPFDLFVTIDGDKIHFNAKVISELYDLPNDVEYSRQAIISKPTK 150

[Close]

BLAST of CsaV3_3G023090 vs. NCBI nr
Match: KAA0053401.1 (hypothetical protein E6C27_scaffold428G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 7.7e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 128 MDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIK 184
           MD VHKFY++K+H FDLFVTIDG K +F+AKVI+ELY LP D EY  QAII+K  K
Sbjct: 1   MDAVHKFYNVKYHPFDLFVTIDGDKIHFNAKVISELYDLPNDVEYSRQAIISKPTK 56

[Close]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL
Match: A0A0A0LAL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.1e-99
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60
           MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK
Sbjct: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60

Query: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF 120
           RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF
Sbjct: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFF 120

Query: 121 TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK 180
           TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK
Sbjct: 121 TGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITK 180

Query: 181 LIKGLAK 188
           LIKGLAK
Sbjct: 181 LIKGLAK 187

[Close]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 125 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 184
           KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 185 LAK 188
           LAK
Sbjct: 62  LAK 64

[Close]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL
Match: A0A5D3C3P6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G00010 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 125 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 184
           KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 185 LAK 188
           LAK
Sbjct: 62  LAK 64

[Close]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL
Match: A0A5D3CVE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00610 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 71  LEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDV 130
           LE RLSP+YE M+V+ T+                          K+R       ++RMD 
Sbjct: 71  LERRLSPKYEGMRVIDTA--------------------------KQR-------ELRMDA 130

Query: 131 VHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIK 184
           VHKFY++K+H FDLFVTIDG K +F+AKVI+ELY LP D EY  QAII+K  K
Sbjct: 131 VHKFYNVKYHPFDLFVTIDGDKIHFNAKVISELYDLPNDVEYSRQAIISKPTK 150

[Close]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL
Match: A0A5A7UIL5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00690 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 128 MDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIK 184
           MD VHKFY++K+H FDLFVTIDG K +F+AKVI+ELY LP D EY  QAII+K  K
Sbjct: 1   MDAVHKFYNVKYHPFDLFVTIDGDKIHFNAKVISELYDLPNDVEYSRQAIISKPTK 56

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57984.1	6.4e-99	100.00	hypothetical protein Csa_010152 [Cucumis sativus]	[more]
KAA0062900.1	1.1e-15	69.84	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK05842.1	2.6e-15	69.84	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15881.1	2.8e-14	46.02	hypothetical protein E5676_scaffold637G00610 [Cucumis melo var. makuwa]	[more]
KAA0053401.1	7.7e-12	67.86	hypothetical protein E6C27_scaffold428G00690 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G023090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL7	3.1e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1	[more]
A0A5A7V6M5	5.6e-16	69.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5D3C3P6	1.2e-15	69.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G000...	[more]
A0A5D3CVE4	1.4e-14	46.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UIL5	3.7e-12	67.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_3G023090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023090.1	CsaV3_3G023090.1	mRNA