CsaV3_3G023080 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein MNN4-like
Location	chr3: 20597398 .. 20597874 (-)
RNA-Seq Expression	CsaV3_3G023080
Synteny	CsaV3_3G023080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACTTGGGGCAAGCCATAATTACAAAACTAATAAAGGGGTTGGCCAAGTAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGAGGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGATAGTACAATTTCAGTGGACTATGCGATGAATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

mRNA sequence

GAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGAGGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGATAGTACAATTTCAGTGGACTATGCGATGAATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

Coding sequence (CDS)

GAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGAGGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGATAGTACAATTTCAGTGGACTATGCGATGAATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

Protein sequence

ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV*

Homology

[Close]

BLAST of CsaV3_3G023080 vs. NCBI nr
Match: KAE8650696.1 (hypothetical protein Csa_023718, partial [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 60
          ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY
Sbjct: 1  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 60

Query: 61 YIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 98
          YIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV
Sbjct: 61 YIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 97

[Close]

BLAST of CsaV3_3G023080 vs. NCBI nr
Match: KAA0062748.1 (hypothetical protein E6C27_scaffold382G00810 [Cucumis melo var. makuwa] >TYK08825.1 hypothetical protein E5676_scaffold87G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 2   LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDST 51
           LKVI WLG  WE  P GR QLYPHQLTIEANVWLFFIKKKI PTR+DST
Sbjct: 94  LKVIVWLGADWERMPTGRLQLYPHQLTIEANVWLFFIKKKIFPTRHDST 142

[Close]

BLAST of CsaV3_3G023080 vs. NCBI nr
Match: TYJ95705.1 (hypothetical protein E5676_scaffold282G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 60
          EL+ IAW GT W+  P+G++QL+PH L ++AN+WLF +K K++PTR+D+TIS+D  M  Y
Sbjct: 4  ELETIAWKGTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVMLLY 63

Query: 61 YIM 64
           IM
Sbjct: 64 CIM 66

[Close]

BLAST of CsaV3_3G023080 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   LKVIAWLGTKWEVAPMG-RFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 61
           LKV+AW G   EV PM  R+QLYPH LT +ANVW+FF K KI PT YDSTIS+DY +  Y
Sbjct: 67  LKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILY 126

Query: 62  YIMTKK 67
            IM KK
Sbjct: 127 CIMIKK 131

[Close]

BLAST of CsaV3_3G023080 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.0e-12
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 2    LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFYY 61
            +K+I W        P  R QL+PHQLTIEANVWLFFIKKKI PT +DSTI  +YA+  Y 
Sbjct: 1270 IKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYC 1329

Query: 62   IMTKKRQSTG 72
            I  KK  + G
Sbjct: 1330 INAKKPFNLG 1339

[Close]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL
Match: A0A5D3CBF2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00020 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 2   LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDST 51
           LKVI WLG  WE  P GR QLYPHQLTIEANVWLFFIKKKI PTR+DST
Sbjct: 94  LKVIVWLGADWERMPTGRLQLYPHQLTIEANVWLFFIKKKIFPTRHDST 142

[Close]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL
Match: A0A5D3BB37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00030 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 60
          EL+ IAW GT W+  P+G++QL+PH L ++AN+WLF +K K++PTR+D+TIS+D  M  Y
Sbjct: 4  ELETIAWKGTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVMLLY 63

Query: 61 YIM 64
           IM
Sbjct: 64 CIM 66

[Close]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   LKVIAWLGTKWEVAPMG-RFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFY 61
           LKV+AW G   EV PM  R+QLYPH LT +ANVW+FF K KI PT YDSTIS+DY +  Y
Sbjct: 67  LKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILY 126

Query: 62  YIMTKK 67
            IM KK
Sbjct: 127 CIMIKK 131

[Close]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 2    LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFYY 61
            +K+I W        P  R QL+PHQLTIEANVWLFFIKKKI PT +DSTI  +YA+  Y 
Sbjct: 1270 IKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYC 1329

Query: 62   IMTKKRQSTG 72
            I  KK  + G
Sbjct: 1330 INAKKPFNLG 1339

[Close]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 2   LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFYY 61
           +K+I W        P  R QL+PHQLTIEANVWLFFIKKKI PT +DSTI  +YA+  Y 
Sbjct: 109 IKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYC 168

Query: 62  IMTKKRQSTG 72
           I  KK  + G
Sbjct: 169 INAKKPFNLG 178

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650696.1	5.4e-49	100.00	hypothetical protein Csa_023718, partial [Cucumis sativus]	[more]
KAA0062748.1	1.5e-14	81.63	hypothetical protein E6C27_scaffold382G00810 [Cucumis melo var. makuwa] >TYK0882...	[more]
TYJ95705.1	6.2e-13	53.97	hypothetical protein E5676_scaffold282G00030 [Cucumis melo var. makuwa]	[more]
KAA0062900.1	6.9e-12	63.64	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049609.1	9.0e-12	55.71	transposase [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G023080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CBF2	7.1e-15	81.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BB37	3.0e-13	53.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6M5	3.3e-12	63.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5A7U806	4.3e-12	55.71	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	4.3e-12	55.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_3G023080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023080.1	CsaV3_3G023080.1	mRNA