CsaV3_3G023070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 20595469 .. 20595823 (-)
RNA-Seq Expression	CsaV3_3G023070
Synteny	CsaV3_3G023070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATATCTACACTTGTGCCCATGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAAGCTTAAAGATGATGGGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCAATGGCCACCTCACGAGGATAGCCTTTTGCCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTTACAAAGATAAAACTCCTTCCCTCCTCAAAAACATAAAACTCCTTCCCTCCTAG

mRNA sequence

TTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATATCTACACTTGTGCCCATGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAAGCTTAAAGATGATGGGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCAATGGCCACCTCACGAGGATAGCCTTTTGCCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTTACAAAGATAAAACTCCTTCCCTCCTCAAAAACATAAAACTCCTTCCCTCCTAG

Coding sequence (CDS)

TTTGCGAGGTTAAACAGAGTCATAAACCTTCACCAAAATAAGGAAGAACATCAACTGAAGACAATGGATCAAGTTAGAGACCACGAAGGAATGGAGAATGAAGAGATATCTACACTTGTGCCCATGAAAAGAAAGGTCGCATCAACCTCAACACAACCCGCGAAGAAGCTTAAAGATGATGGGACCAAAGACTCGTACTCAGGAAAATTCCCTCATTGTAGAAAGGTCACTCAATGGCCACCTCACGAGGATAGCCTTTTGCCTCCTCATAATCCAAAAGAACAATCCCTCTCCCCTCCTTACAAAGATAAAACTCCTTCCCTCCTCAAAAACATAAAACTCCTTCCCTCCTAG

Protein sequence

FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDDGTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS*

Homology

[Close]

BLAST of CsaV3_3G023070 vs. NCBI nr
Match: KAE8650695.1 (hypothetical protein Csa_023695, partial [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 60
           FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD
Sbjct: 1   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 60

Query: 61  GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 118
           GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS
Sbjct: 61  GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 117

[Close]

BLAST of CsaV3_3G023070 vs. NCBI nr
Match: KAA0047718.1 (hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK08372.1 hypothetical protein E5676_scaffold648G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 2   ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 61
           + LNRVI LHQN KEE  LKT+ ++RD EGM+ ++I  LVP+KRKVA T  QPA K K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188

Query: 62  GTKDSYSGKFPHCRKVT 78
             KDS  GKFP  +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205

[Close]

BLAST of CsaV3_3G023070 vs. NCBI nr
Match: KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 4   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEISTLVPMKRKVASTSTQPAKKLKDDG 63
           LNRVI  HQNK EE+ LKT+   ++ EGME+ E++   +PMKR +ASTS Q  KKLK D 
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253

Query: 64  TKD-SYSGKFPHCRKVTQWPPHEDSLLP----PHNPKEQSLSPPYKDKTPSLL 110
           TK  +      HC+KVT  P  E    P    P     ++ +PP+ D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CsaV3_3G023070 vs. NCBI nr
Match: TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 4   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEISTLVPMKRKVASTSTQPAKKLKDDG 63
           LNRVI  HQNK EE+ LKT+   ++ +GME+ E++   +PMKR +ASTS Q  KKLK D 
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253

Query: 64  TKD-SYSGKFPHCRKVTQWPPHE----DSLLPPHNPKEQSLSPPYKDKTPSLL 110
           TK  +      HC+KVT  P  E     SL  P     ++ +PP+ D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CsaV3_3G023070 vs. NCBI nr
Match: KAA0053401.1 (hypothetical protein E6C27_scaffold428G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 26  RDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDDGTKDSYSGKFPHCR--KVTQWPPHE 85
           RD +G+E+EE+  L  +KRKV  T T P KK K D TK+    K P  R  KV + PP E
Sbjct: 57  RDPKGLEDEEVPLLELLKRKVLYTLTYPTKKPKVDATKEVTPNKIPPHRRKKVFRCPPCE 116

Query: 86  DSLLPPHNPKEQSLSPP 101
           D+L P H+PKE+SL PP
Sbjct: 117 DNLSPSHDPKEKSLFPP 133

[Close]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL
Match: A0A0A0L879 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 60
           FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD
Sbjct: 5   FARLNRVINLHQNKEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 64

Query: 61  GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 118
           GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS
Sbjct: 65  GTKDSYSGKFPHCRKVTQWPPHEDSLLPPHNPKEQSLSPPYKDKTPSLLKNIKLLPS 121

[Close]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL
Match: A0A5D3CAP7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001850 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 2   ARLNRVINLHQN-KEEHQLKTMDQVRDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDD 61
           + LNRVI LHQN KEE  LKT+ ++RD EGM+ ++I  LVP+KRKVA T  QPA K K D
Sbjct: 129 SELNRVIILHQNKKEERNLKTVGRIRDPEGMKEKKIHPLVPVKRKVALTLMQPANKPKVD 188

Query: 62  GTKDSYSGKFPHCRKVT 78
             KDS  GKFP  +KVT
Sbjct: 189 AIKDSTLGKFPRRKKVT 205

[Close]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL
Match: A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 4   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEISTLVPMKRKVASTSTQPAKKLKDDG 63
           LNRVI  HQNK EE+ LKT+   ++ +GME+ E++   +PMKR +ASTS Q  KKLK D 
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 253

Query: 64  TKD-SYSGKFPHCRKVTQWPPHE----DSLLPPHNPKEQSLSPPYKDKTPSLL 110
           TK  +      HC+KVT  P  E     SL  P     ++ +PP+ D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPSLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL
Match: A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 4   LNRVINLHQNK-EEHQLKTMDQVRDHEGMEN-EEISTLVPMKRKVASTSTQPAKKLKDDG 63
           LNRVI  HQNK EE+ LKT+   ++ EGME+ E++   +PMKR +ASTS Q  KKLK D 
Sbjct: 194 LNRVITFHQNKEEEYHLKTLGHEKEPEGMEDKEDLPLSLPMKRTIASTSMQLGKKLKVDA 253

Query: 64  TKD-SYSGKFPHCRKVTQWPPHEDSLLP----PHNPKEQSLSPPYKDKTPSLL 110
           TK  +      HC+KVT  P  E    P    P     ++ +PP+ D    LL
Sbjct: 254 TKQVAKENNSTHCKKVTSLPGDELLCRPYLFFPLINLPKTKTPPHLDLNEPLL 306

[Close]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL
Match: A0A5A7UIL5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00690 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 26  RDHEGMENEEISTLVPMKRKVASTSTQPAKKLKDDGTKDSYSGKFPHCR--KVTQWPPHE 85
           RD +G+E+EE+  L  +KRKV  T T P KK K D TK+    K P  R  KV + PP E
Sbjct: 57  RDPKGLEDEEVPLLELLKRKVLYTLTYPTKKPKVDATKEVTPNKIPPHRRKKVFRCPPCE 116

Query: 86  DSLLPPHNPKEQSLSPP 101
           D+L P H+PKE+SL PP
Sbjct: 117 DNLSPSHDPKEKSLFPP 133

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650695.1	1.5e-58	100.00	hypothetical protein Csa_023695, partial [Cucumis sativus]	[more]
KAA0047718.1	4.1e-11	59.74	hypothetical protein E6C27_scaffold115G002320 [Cucumis melo var. makuwa] >TYK083...	[more]
KAA0053237.1	6.1e-07	43.36	hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]	[more]
TYJ97633.1	6.1e-07	43.36	hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]	[more]
KAA0053401.1	1.4e-06	50.65	hypothetical protein E6C27_scaffold428G00690 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G023070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L879	7.4e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418740 PE=4 SV=1	[more]
A0A5D3CAP7	2.0e-11	59.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BEA4	3.0e-07	43.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFG4	3.0e-07	43.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UIL5	6.6e-07	50.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_3G023070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023070.1	CsaV3_3G023070.1	mRNA