CsaV3_3G023060 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023060
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 20592091 .. 20592504 (-)
RNA-Seq Expression	CsaV3_3G023060
Synteny	CsaV3_3G023060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGTCGAGGTAGGAAATACGAGAATAAAAGATTATGTAAAGGAAGAGCCAAAAGAAGGAAAAAAGATTGACGAGAATAGAAGACTATGTAATAAGAAGAACGGTGATCAAGTGCAACAACAAGTTACGGAGGATGGAAAAGAGTATTTCCACTGGAAAGGACTTCCTCCCCTGCTGATGAATCTACAAGTTGGAGACAAGGGCCCGTGAAAAGTTAAGTCTAGAAAAACTCGGGCTCTTGAAAGAAAGAATGGAAGAGAGGAAGATGGAGAAAAAACAGCTTGGAGAGTTGGAGAAGAAAGCGATAAAAGAACTGTTGTTGAGGGAGAGCCTCTAGCAAGAAATCCCCTGCAAGAAGAGGAGGGTGAAAGGGAAAGTGGACTTCACAAAGAAGAAGAAGAAACCTGA

mRNA sequence

ATGGAGAAGGTCGAGGTAGGAAATACGAGAATAAAAGATTATGTAAAGGAAGAGCCAAAAGAAGGAAAAAAGATTGACGAGAATAGAAGACTATGTAATAAGAAGAACGGTGATCAAGTGCAACAACAAGTTACGGAGGATGGAAAAGAGTATTTCCACTGGAAAGGACTTCCTCCCCTGCTGATGAATCTACAAGTTGGAGACAAGGGCCCAAAGAATGGAAGAGAGGAAGATGGAGAAAAAACAGCTTGGAGAGTTGGAGAAGAAAGCGATAAAAGAACTGTTGTTGAGGGAGAGCCTCTAGCAAGAAATCCCCTGCAAGAAGAGGAGGGTGAAAGGGAAAGTGGACTTCACAAAGAAGAAGAAGAAACCTGA

Coding sequence (CDS)

ATGGAGAAGGTCGAGGTAGGAAATACGAGAATAAAAGATTATGTAAAGGAAGAGCCAAAAGAAGGAAAAAAGATTGACGAGAATAGAAGACTATGTAATAAGAAGAACGGTGATCAAGTGCAACAACAAGTTACGGAGGATGGAAAAGAGTATTTCCACTGGAAAGGACTTCCTCCCCTGCTGATGAATCTACAAGTTGGAGACAAGGGCCCAAAGAATGGAAGAGAGGAAGATGGAGAAAAAACAGCTTGGAGAGTTGGAGAAGAAAGCGATAAAAGAACTGTTGTTGAGGGAGAGCCTCTAGCAAGAAATCCCCTGCAAGAAGAGGAGGGTGAAAGGGAAAGTGGACTTCACAAAGAAGAAGAAGAAACCTGA

Protein sequence

MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPLLMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKEEEET*

Homology

[Close]

BLAST of CsaV3_3G023060 vs. NCBI nr
Match: KGN57982.1 (hypothetical protein Csa_010816 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL 60
           MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL
Sbjct: 1   MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL 60

Query: 61  LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE 120
           LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE
Sbjct: 61  LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE 120

Query: 121 EEET 125
           EEET
Sbjct: 121 EEET 124

[Close]

BLAST of CsaV3_3G023060 vs. ExPASy TrEMBL
Match: A0A0A0LBF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418730 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL 60
           MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL
Sbjct: 1   MEKVEVGNTRIKDYVKEEPKEGKKIDENRRLCNKKNGDQVQQQVTEDGKEYFHWKGLPPL 60

Query: 61  LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE 120
           LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE
Sbjct: 61  LMNLQVGDKGPKNGREEDGEKTAWRVGEESDKRTVVEGEPLARNPLQEEEGERESGLHKE 120

Query: 121 EEET 125
           EEET
Sbjct: 121 EEET 124

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57982.1	4.1e-62	100.00	hypothetical protein Csa_010816 [Cucumis sativus]	[more]

BLAST of CsaV3_3G023060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF8	2.0e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418730 PE=4 SV=1	[more]

BLAST of CsaV3_3G023060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023060.1	CsaV3_3G023060.1	mRNA