CsaV3_3G023030 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023030
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DUF4283 domain-containing protein
Location	chr3: 20558803 .. 20559168 (+)
RNA-Seq Expression	CsaV3_3G023030
Synteny	CsaV3_3G023030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

mRNA sequence

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

Coding sequence (CDS)

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

Protein sequence

MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLIR*

Homology

[Close]

BLAST of CsaV3_3G023030 vs. NCBI nr
Match: KGN57979.1 (hypothetical protein Csa_009513 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60
           MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK
Sbjct: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60

Query: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120
           KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI
Sbjct: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of CsaV3_3G023030 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D FT 
Sbjct: 344 QEEVVSKIIPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVEKEVGKLDEFTL 403

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLL 116
           +TRK+RELV V+D G    +   NS  SL       VG +  W +T++
Sbjct: 404 VTRKKRELVSVRDRGKSLEVTMPNSFGSLLE-----VGDINKWALTII 446

[Close]

BLAST of CsaV3_3G023030 vs. NCBI nr
Match: KAA0025860.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK22605.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 21  EGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKD 80
           E L  VAC  ++IESF QL+EGEI  SLD  S Q E++V + D FT +TRK+RELV V+D
Sbjct: 445 EELANVACGKVVIESFKQLEEGEIKSSLDRPSCQMEKEVGERDEFTLVTRKKRELVSVRD 504

Query: 81  HGVGKVMADANSSSSL 97
            G    +   NS  SL
Sbjct: 505 RGKSLEVTMPNSFDSL 520

[Close]

BLAST of CsaV3_3G023030 vs. NCBI nr
Match: TYK26642.1 (uncharacterized protein E5676_scaffold313G002880 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 6   NAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNF 65
           N   E   + V  +G+GL    C  +++ESF QL+EGEI  S +  S+Q +++V KSD F
Sbjct: 248 NVSEEVVHKIVPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVKKEVGKSDEF 307

Query: 66  TPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLG 101
           T +TRK+ +LV VKD G    +   NS  SL  +G
Sbjct: 308 TLVTRKKSDLVSVKDRGKRNEVIMPNSFGSLLEVG 342

[Close]

BLAST of CsaV3_3G023030 vs. NCBI nr
Match: KAA0049770.1 (hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK12107.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 14  ENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRR 73
           E V  +G+GL    C  +++ESF QL+EG+I  S +  ++Q E+ V KSD+FT +TRK+ 
Sbjct: 97  EEVVHKGDGLDSEPCGEVVLESFKQLEEGKIRSSPNRHNSQVEKGVGKSDDFTLVTRKKS 156

Query: 74  ELVLVKDHGVGKVMADANSSSSLTNLG 101
           ELV V+D G    +   NS  SL  +G
Sbjct: 157 ELVSVRDRGKSMEVIMPNSFGSLLEVG 183

[Close]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL
Match: A0A0A0LAL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417710 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60
           MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK
Sbjct: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60

Query: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120
           KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI
Sbjct: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D FT 
Sbjct: 344 QEEVVSKIIPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVEKEVGKLDEFTL 403

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLL 116
           +TRK+RELV V+D G    +   NS  SL       VG +  W +T++
Sbjct: 404 VTRKKRELVSVRDRGKSLEVTMPNSFGSLLE-----VGDINKWALTII 446

[Close]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL
Match: A0A5A7SI67 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00250 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 21  EGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKD 80
           E L  VAC  ++IESF QL+EGEI  SLD  S Q E++V + D FT +TRK+RELV V+D
Sbjct: 445 EELANVACGKVVIESFKQLEEGEIKSSLDRPSCQMEKEVGERDEFTLVTRKKRELVSVRD 504

Query: 81  HGVGKVMADANSSSSL 97
            G    +   NS  SL
Sbjct: 505 RGKSLEVTMPNSFDSL 520

[Close]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL
Match: A0A5D3DT40 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002880 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 6   NAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNF 65
           N   E   + V  +G+GL    C  +++ESF QL+EGEI  S +  S+Q +++V KSD F
Sbjct: 248 NVSEEVVHKIVPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVKKEVGKSDEF 307

Query: 66  TPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLG 101
           T +TRK+ +LV VKD G    +   NS  SL  +G
Sbjct: 308 TLVTRKKSDLVSVKDRGKRNEVIMPNSFGSLLEVG 342

[Close]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL
Match: A0A5A7U3C2 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00410 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 14  ENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRR 73
           E V  +G+GL    C  +++ESF QL+EG+I  S +  ++Q E+ V KSD+FT +TRK+ 
Sbjct: 97  EEVVHKGDGLDSEPCGEVVLESFKQLEEGKIRSSPNRHNSQVEKGVGKSDDFTLVTRKKS 156

Query: 74  ELVLVKDHGVGKVMADANSSSSLTNLG 101
           ELV V+D G    +   NS  SL  +G
Sbjct: 157 ELVSVRDRGKSMEVIMPNSFGSLLEVG 183

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57979.1	1.1e-56	100.00	hypothetical protein Csa_009513 [Cucumis sativus]	[more]
TYK23423.1	5.7e-08	38.89	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0025860.1	7.5e-08	51.32	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK22605.1 DUF4283...	[more]
TYK26642.1	2.2e-07	41.05	uncharacterized protein E5676_scaffold313G002880 [Cucumis melo var. makuwa]	[more]
KAA0049770.1	2.8e-07	42.53	hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK1210...	[more]

BLAST of CsaV3_3G023030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL0	5.5e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417710 PE=4 SV=1	[more]
A0A5D3DIK9	2.8e-08	38.89	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SI67	3.6e-08	51.32	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DT40	1.1e-07	41.05	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U3C2	1.4e-07	42.53	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]

BLAST of CsaV3_3G023030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023030.1	CsaV3_3G023030.1	mRNA