CsaV3_3G022920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G022920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor ILR3-like
Location	chr3: 20455891 .. 20456338 (-)
RNA-Seq Expression	CsaV3_3G022920
Synteny	CsaV3_3G022920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAATCAGCTACGTAGTGAAACGCAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCAAGTCTCCATGGATTTCTTTGCCAATTTTGTTTGCATTTTATGCATTTGCATGGAGAAATATAAAACGCCAAATCATAATTTCATTTCTTTCAATCTTGTGTAGGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATTCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATACCCACATTTCCTGCTCAGGGTCAAGCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCTAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA

mRNA sequence

ATGGTGAATCAGCTACGTAGTGAAACGCAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATTCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATACCCACATTTCCTGCTCAGGGTCAAGCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCTAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA

Coding sequence (CDS)

ATGGTGAATCAGCTACGTAGTGAAACGCAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATTCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATACCCACATTTCCTGCTCAGGGTCAAGCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCTAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA

Protein sequence

MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA*

Homology

[Close]

BLAST of CsaV3_3G022920 vs. NCBI nr
Match: XP_004151959.3 (LOW QUALITY PROTEIN: transcription factor ILR3 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 181

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 234

[Close]

BLAST of CsaV3_3G022920 vs. NCBI nr
Match: XP_031745357.1 (transcription factor ILR3-like, partial [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG
Sbjct: 200 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 259

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 260 FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 312

[Close]

BLAST of CsaV3_3G022920 vs. NCBI nr
Match: KAE8650688.1 (hypothetical protein Csa_010538 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG
Sbjct: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 113

[Close]

BLAST of CsaV3_3G022920 vs. NCBI nr
Match: KAE8637218.1 (hypothetical protein CSA_021121 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 113/123 (91.87%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELK----------AEKNELRDEKQRLKADKERLEQQ 60
           MVNQLRSETQKLKESNSSLQEKIKELK          AEKNELRDEKQRLKADKERLEQQ
Sbjct: 151 MVNQLRSETQKLKESNSSLQEKIKELKASLHGFLCQFAEKNELRDEKQRLKADKERLEQQ 210

Query: 61  VKSIPAQQPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRP 114
           VKSIPAQQPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRP
Sbjct: 211 VKSIPAQQPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRP 270

[Close]

BLAST of CsaV3_3G022920 vs. NCBI nr
Match: XP_008454561.1 (PREDICTED: transcription factor ILR3-like [Cucumis melo] >KAA0046455.1 transcription factor ILR3-like [Cucumis melo var. makuwa] >TYJ97758.1 transcription factor ILR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKS+PAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPG 181

Query: 61  FLPPPIPTFPAQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQA GNKL PFIGYHPSVAMWQFMPPAAVDTSQDH+LRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHILRPPVA 235

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-35
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MV QLR E QKLK+SNSSLQ+KIKELK EKNELRDEKQRLK +KE+LEQQ+K++ A QP 
Sbjct: 118 MVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPS 177

Query: 61  FLPPPIPTFP-----AQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F P P P  P     AQGQA GNK+VP I Y P VAMWQFMPPA+VDTSQDHVLRPPVA
Sbjct: 178 FFPAP-PMMPTAFASAQGQAPGNKMVPIISY-PGVAMWQFMPPASVDTSQDHVLRPPVA 234

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-32
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSI---PAQ 60
           MVNQ R E QKLK+ NSSLQEKIKELK EKNELRDEKQ+LK +KER++QQ+K+I   P  
Sbjct: 113 MVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQP 172

Query: 61  QPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           QP FLP P     AQ   G+KLVPF  Y P  AMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 173 QPCFLPNPQTLSQAQA-PGSKLVPFTTY-PGFAMWQFMPPAAVDTSQDHVLRPPVA 226

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           ++NQLR E  KL+E+N  L E+IK LKAEKNELR+EK  LKADKE+ EQQ+KS+ A   G
Sbjct: 177 ILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSG 236

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F+P     F     A   + P  GY P   MW +MP +  DTS+D  LRPP A
Sbjct: 237 FIPHIPAAFNHNKMA---VYPSYGYMP---MWHYMPQSVRDTSRDQELRPPAA 283

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-17
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           +VNQLR E  +L+E+N  L E+IK LKA+KNELR+EK  LKA+KE++EQQ+KS+    PG
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPG 268

Query: 61  FLPPPIP-TFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F+P   P  F +   A     P+  Y P++ MW  +PPA  DTS+D    PPVA
Sbjct: 269 FMPSQHPAAFHSHKMA--VAYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL
Match: A0A0A0L7N8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKS+PAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPG 181

Query: 61  FLPPPIPTFPAQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQA GNKL PFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL
Match: A0A5D3BHU4 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00660 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.2e-51
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKS+PAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPG 181

Query: 61  FLPPPIPTFPAQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQA GNKL PFIGYHPSVAMWQFMPPAAVDTSQDH+LRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHILRPPVA 235

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL
Match: A0A1S3BYW4 (transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103494952 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.2e-51
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKS+PAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPG 181

Query: 61  FLPPPIPTFPAQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQA GNKL PFIGYHPSVAMWQFMPPAAVDTSQDH+LRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHILRPPVA 235

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL
Match: A0A0A0L7P5 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSETQKLKESNSSLQEKIKELKAEKN    EKQRLKADKERLEQQVKSIPAQQPG
Sbjct: 122 MVNQLRSETQKLKESNSSLQEKIKELKAEKN----EKQRLKADKERLEQQVKSIPAQQPG 181

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 182 FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 230

[Close]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL
Match: A0A5A7TUD2 (Transcription factor ILR3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00580 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MVNQLRSET KLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKS+PAQQPG
Sbjct: 122 MVNQLRSETHKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPG 181

Query: 61  FLPPPIPTFPAQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           FL PPIPTFPAQGQA GNKL PF+GYHPSVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 182 FL-PPIPTFPAQGQAPGNKLFPFVGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 234

[Close]

BLAST of CsaV3_3G022920 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-36
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           MV QLR E QKLK+SNSSLQ+KIKELK EKNELRDEKQRLK +KE+LEQQ+K++ A QP 
Sbjct: 118 MVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPS 177

Query: 61  FLPPPIPTFP-----AQGQA-GNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F P P P  P     AQGQA GNK+VP I Y P VAMWQFMPPA+VDTSQDHVLRPPVA
Sbjct: 178 FFPAP-PMMPTAFASAQGQAPGNKMVPIISY-PGVAMWQFMPPASVDTSQDHVLRPPVA 234

[Close]

BLAST of CsaV3_3G022920 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-33
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSI---PAQ 60
           MVNQ R E QKLK+ NSSLQEKIKELK EKNELRDEKQ+LK +KER++QQ+K+I   P  
Sbjct: 113 MVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQP 172

Query: 61  QPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           QP FLP P     AQ   G+KLVPF  Y P  AMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 173 QPCFLPNPQTLSQAQA-PGSKLVPFTTY-PGFAMWQFMPPAAVDTSQDHVLRPPVA 226

[Close]

BLAST of CsaV3_3G022920 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-33
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSI---PAQ 60
           MVNQ R E QKLK+ NSSLQEKIKELK EKNELRDEKQ+LK +KER++QQ+K+I   P  
Sbjct: 179 MVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQP 238

Query: 61  QPGFLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           QP FLP P     AQ   G+KLVPF  Y P  AMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 239 QPCFLPNPQTLSQAQA-PGSKLVPFTTY-PGFAMWQFMPPAAVDTSQDHVLRPPVA 292

[Close]

BLAST of CsaV3_3G022920 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 9.4e-19
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           ++NQLR E  KL+E+N  L E+IK LKAEKNELR+EK  LKADKE+ EQQ+KS+ A   G
Sbjct: 177 ILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSG 236

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F+P     F     A   + P  GY P   MW +MP +  DTS+D  LRPP A
Sbjct: 237 FIPHIPAAFNHNKMA---VYPSYGYMP---MWHYMPQSVRDTSRDQELRPPAA 283

[Close]

BLAST of CsaV3_3G022920 vs. TAIR 10
Match: AT4G14410.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 9.4e-19
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSIPAQQPG 60
           ++NQLR E  KL+E+N  L E+IK LKAEKNELR+EK  LKADKE+ EQQ+KS+ A   G
Sbjct: 171 ILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSG 230

Query: 61  FLPPPIPTFPAQGQAGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 114
           F+P     F     A   + P  GY P   MW +MP +  DTS+D  LRPP A
Sbjct: 231 FIPHIPAAFNHNKMA---VYPSYGYMP---MWHYMPQSVRDTSRDQELRPPAA 277

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151959.3	5.5e-53	100.00	LOW QUALITY PROTEIN: transcription factor ILR3 [Cucumis sativus]	[more]
XP_031745357.1	5.5e-53	100.00	transcription factor ILR3-like, partial [Cucumis sativus]	[more]
KAE8650688.1	5.5e-53	100.00	hypothetical protein Csa_010538 [Cucumis sativus]	[more]
KAE8637218.1	1.5e-50	91.87	hypothetical protein CSA_021121 [Cucumis sativus]	[more]
XP_008454561.1	1.5e-50	96.49	PREDICTED: transcription factor ILR3-like [Cucumis melo] >KAA0046455.1 transcrip...	[more]

BLAST of CsaV3_3G022920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH37	1.8e-35	73.11	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
Q9C682	7.2e-32	70.69	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
Q8L467	1.3e-17	51.33	Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=...	[more]
Q9LTC7	6.6e-17	49.12	Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1	[more]

BLAST of CsaV3_3G022920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N8	5.5e-51	97.37	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 S...	[more]
A0A5D3BHU4	7.2e-51	96.49	Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BYW4	7.2e-51	96.49	transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103494952 PE=4 SV=1	[more]
A0A0A0L7P5	1.8e-49	96.46	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 S...	[more]
A0A5A7TUD2	3.3e-48	94.74	Transcription factor ILR3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of CsaV3_3G022920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54680.1	1.3e-36	73.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.1	5.1e-33	70.69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	5.1e-33	70.69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.1	9.4e-19	51.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.2	9.4e-19	51.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..57
None	No IPR available	GENE3D	1.20.5.340		coord: 1..57 e-value: 5.2E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73
None	No IPR available	PANTHER	PTHR46133:SF10	BHLH DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 1..113
IPR044818	Transcription factor ILR3-like	PANTHER	PTHR46133	BHLH TRANSCRIPTION FACTOR	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022920.1	CsaV3_3G022920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity