CsaV3_3G020430 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G020430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 16534642 .. 16534908 (+)
RNA-Seq Expression	CsaV3_3G020430
Synteny	CsaV3_3G020430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGTCCTTGGAAGAAGAAGCAAAGGTAGAGAGTGGGAGACAAATTAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

mRNA sequence

ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

Coding sequence (CDS)

ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

Protein sequence

MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILAHSRMLLQAQAEEM*

Homology

[Close]

BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_010598 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60
          MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60

Query: 61 HSRMLLQAQAEEM 74
          HSRMLLQAQAEEM
Sbjct: 61 HSRMLLQAQAEEM 73

[Close]

BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_022689 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 73
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 86

[Close]

BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_011070 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.1e-09
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96

Query: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 73
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 97  EEKLSIHKKEEILACARMLLWTQLDK 122

[Close]

BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_011472 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117

Query: 62  EKVSTHKKEEILAHSRMLLQAQAEE 73
           E     KKEEIL HS MLL AQ E+
Sbjct: 118 E----FKKEEILEHSMMLLWAQVED 138

[Close]

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL
Match: A0A0A0L6W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60
          MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60

Query: 61 HSRMLLQAQAEEM 74
          HSRMLLQAQAEEM
Sbjct: 61 HSRMLLQAQAEEM 73

[Close]

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL
Match: A0A0A0LTC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 73
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 86

[Close]

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL
Match: A0A0A0L7Q4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-09
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96

Query: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 73
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 97  EEKLSIHKKEEILACARMLLWTQLDK 122

[Close]

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL
Match: A0A0A0LAF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117

Query: 62  EKVSTHKKEEILAHSRMLLQAQAEE 73
           E     KKEEIL HS MLL AQ E+
Sbjct: 118 E----FKKEEILEHSMMLLWAQVED 138

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57730.1	4.7e-29	100.00	hypothetical protein Csa_010598 [Cucumis sativus]	[more]
KGN65003.1	4.8e-10	56.98	hypothetical protein Csa_022689 [Cucumis sativus]	[more]
KGN57975.1	9.1e-09	53.49	hypothetical protein Csa_011070 [Cucumis sativus]	[more]
KGN57939.1	2.7e-08	55.29	hypothetical protein Csa_011472 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6W8	2.3e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1	[more]
A0A0A0LTC4	2.3e-10	56.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
A0A0A0L7Q4	4.4e-09	53.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1	[more]
A0A0A0LAF6	1.3e-08	55.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1	[more]

BLAST of CsaV3_3G020430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020430.1	CsaV3_3G020430.1	mRNA