CsaV3_3G017070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G017070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	25.3 kDa vesicle transport protein isoform X1
Location	chr3: 12803288 .. 12805319 (-)
RNA-Seq Expression	CsaV3_3G017070
Synteny	CsaV3_3G017070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATATGGTGAAGCTAACAATGGTTGGAAGGGTTAGAGATGGATTGCCAATTGCACAAGGAATTAGGTATGTTAATGAAGAGAATGATGATGTTTTTGGGTACAAAAAGCAAGCTGAATTCATACTCAAAGAGATCTCTAGAGGGACTTTGTCACCTCCAAAAATGGTCATTCTAATGCATCATCACTCTTTCATGTACTCCTCTCCCCTTCTCTTTACCTCCTCTTTTGATTAATTGTTTTTTTTACAGCGTGTTTCATGCTTTTAAATGCAATTTTCATTTCATCATATAATTAAAATCGTTTTAAATCATAAAAAATATGTTTTATAATGATTTTAACCGATTTAGAATCATTCTCATTCACGTCTATCTCTATTTCATTTCATATTTATCCATTGATTGAATGTAAAATATAATTTACAAAATTTACCTCGAACGTTTGTTGAAAGAGTTTTATATATTTAGATTCATTAACATTAGCTTTGGTTCATTTTAAATAACACAAACGAACTTACAAAATCCACCTTAGATTATCAATTTTAAAATTGAAAACTAAGCAACAACATTTTATTTATTTTTGTTTGGTATTTAGTTACTTGGTGGAAAATGGTGTATGCTATATGACATTGTGCGATTCTTCATACCCAAGAAAGCTGGCTATCCATTACTTACAAGATTTGCAAAAAGAGTTTGGGAAGTTTGATGATGCTCTGATAAATAAGCTTATCAAACCCTATAGTTTTCTCAAATTTGGTAACCTTTTCTCAACCCTCTCTTCATCTCCATACATATATATATTAATCTTCTTTCAAAGATGTGTTCACCAAGGAAACATTATTATTATTTCTCCATAAATATGCTGTTTTTCTTTATCTTTTTAAAGAAATGTTTGATGCCCTCAACTCAATAATGAAAAGAAAAGAATATATCAATTACTACTTTAATTTGTAATAACTTAATCTATATATATATCTATATATGGTTGTTATATTCTCCTTTTTCACCCTACTTTACTTCCTTTCAAAGAAAGGTCCTACTTTCTATTAGTATTTTAAATAATCCATAATTAATGTTATTTATATATAATAATGTATTTGGAAATTATTCAAAGACTAATAATTAATAATTAAGACATTGATATATTTTGTAGACAGTATTATTAGCAATGTTAGAAAACAATATATCGATACAAGAACACAAGCCAATCTTAGCAAGCTCAATGCAAATCGTCGTCAACCTGATCCAGATATTTCCACTTGTTCGCTTTCTGAAATTTTAGAGAGAAGGAGAAAATTCGGTAACTATTTTTAATTAAATTTCTTATAATAAGTAAATATACCTAAAGTTTGAAATTTAAGGGATAATTTCATATGATTATCATTTGATTAATAATGTTAATATAAATTATATTAAGATTATGGTTATGTTAATAATTAATAATTCAGATATGGTGGAAAGATCAAGGAGTAATAATAATACAAATTCTGAAGGTAATTCCTGCTCCATTTGGGGGTCTCCCTATCTTGAGGTAAGTTATTGAAGTTAGTTTGCTTTTATTTTAATTATTGACAATTAATTAAAATAAAGTATATATAAAGCATCAAATAATTAAGCTTAATTGTATTAATTATTTTTCTTTATGTTGTGTGTATATATATGTGTGTATATGGTCAGGAAATTGGTGTGAAATGGACGCCAATGGTGGTAACTTTTGGCGTAGTGCTTATCGTTCTATGGGCTTCCTTTCTTCTATTCGACATCTCATTATCTCATCATAATCAATTTGTAATTTTATATAACAACAGAAAATTGTTTCCCTAATTTTGTTTAATATTTCTTTTCTTCCCATACACCACTCTCTCTTCCATTAATTTCTTTCACTTTACCTACACGTGCCTGTATAGATACGAAATCTTTTTTAATAGTATAAATTTATAAATCATTTAATAACACGTCAAATAATCAATTAAAATAGTAGATATGCACTATCATATCACTCAAAATATTGAACTTTGAATATTTAAAAATGAG

mRNA sequence

ATGGTGAAGCTAACAATGGTTGGAAGGGTTAGAGATGGATTGCCAATTGCACAAGGAATTAGGTATGTTAATGAAGAGAATGATGATGTTTTTGGGTACAAAAAGCAAGCTGAATTCATACTCAAAGAGATCTCTAGAGGGACTTTGTCACCTCCAAAAATGGTCATTCTAATGCATCATCACTCTTTCATTTACTTGGTGGAAAATGGTGTATGCTATATGACATTGTGCGATTCTTCATACCCAAGAAAGCTGGCTATCCATTACTTACAAGATTTGCAAAAAGAGTTTGGGAAGTTTGATGATGCTCTGATAAATAAGCTTATCAAACCCTATAGTTTTCTCAAATTTGACAGTATTATTAGCAATGTTAGAAAACAATATATCGATACAAGAACACAAGCCAATCTTAGCAAGCTCAATGCAAATCGTCGTCAACCTGATCCAGATATTTCCACTTGTTCGCTTTCTGAAATTTTAGAGAGAAGGAGAAAATTCGATATGGTGGAAAGATCAAGGAGTAATAATAATACAAATTCTGAAGGTAATTCCTGCTCCATTTGGGGGTCTCCCTATCTTGAGGAAATTGGTGTGAAATGGACGCCAATGGTGGTAACTTTTGGCGTAGTGCTTATCGTTCTATGGGCTTCCTTTCTTCTATTCGACATCTCATTATCTCATCATAATCAATTTGTAATTTTATATAACAACAGAAAATTGTTTCCCTAA

Coding sequence (CDS)

ATGGTGAAGCTAACAATGGTTGGAAGGGTTAGAGATGGATTGCCAATTGCACAAGGAATTAGGTATGTTAATGAAGAGAATGATGATGTTTTTGGGTACAAAAAGCAAGCTGAATTCATACTCAAAGAGATCTCTAGAGGGACTTTGTCACCTCCAAAAATGGTCATTCTAATGCATCATCACTCTTTCATTTACTTGGTGGAAAATGGTGTATGCTATATGACATTGTGCGATTCTTCATACCCAAGAAAGCTGGCTATCCATTACTTACAAGATTTGCAAAAAGAGTTTGGGAAGTTTGATGATGCTCTGATAAATAAGCTTATCAAACCCTATAGTTTTCTCAAATTTGACAGTATTATTAGCAATGTTAGAAAACAATATATCGATACAAGAACACAAGCCAATCTTAGCAAGCTCAATGCAAATCGTCGTCAACCTGATCCAGATATTTCCACTTGTTCGCTTTCTGAAATTTTAGAGAGAAGGAGAAAATTCGATATGGTGGAAAGATCAAGGAGTAATAATAATACAAATTCTGAAGGTAATTCCTGCTCCATTTGGGGGTCTCCCTATCTTGAGGAAATTGGTGTGAAATGGACGCCAATGGTGGTAACTTTTGGCGTAGTGCTTATCGTTCTATGGGCTTCCTTTCTTCTATTCGACATCTCATTATCTCATCATAATCAATTTGTAATTTTATATAACAACAGAAAATTGTTTCCCTAA

Protein sequence

MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHHHSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSIISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNSEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKLFP*

Homology

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BLAST of CsaV3_3G017070 vs. NCBI nr
Match: XP_011651150.1 (25.3 kDa vesicle transport protein isoform X1 [Cucumis sativus] >KGN57371.1 hypothetical protein Csa_011539 [Cucumis sativus])

HSP 1 Score: 487.3 bits (1253), Expect = 7.9e-134
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI
Sbjct: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS
Sbjct: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240

Query: 241 FP 243
           FP
Sbjct: 241 FP 242

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BLAST of CsaV3_3G017070 vs. NCBI nr
Match: XP_008439222.1 (PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 226/242 (93.39%), Postives = 231/242 (95.45%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYLVENGVCYMTLCDSSYPRKLA+HYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI
Sbjct: 61  HSFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISNVRKQYIDTRTQ NL KLNANRRQPDPDI +CS SEILERRRK D+ ERSR   NTNS
Sbjct: 121 ISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKLDIEERSRC--NTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           +G S SIWGSPYLEEIG+KWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 QGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240

Query: 241 FP 243
           FP
Sbjct: 241 FP 240

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BLAST of CsaV3_3G017070 vs. NCBI nr
Match: XP_038875892.1 (25.3 kDa vesicle transport protein [Benincasa hispida])

HSP 1 Score: 414.1 bits (1063), Expect = 8.5e-112
Identity = 208/241 (86.31%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRY+NEENDDV GYKKQAEFILKEISRGTLS  KM ILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYINEENDDVLGYKKQAEFILKEISRGTLSSSKMAILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           H FIYLVENGVCYMTLCDSSYPRKLA+HYLQDLQKE G+F+ ALINKLIKPYS  +FD I
Sbjct: 61  HCFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEVGEFEYALINKLIKPYSLTQFDGI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISN+RKQYIDTRTQANL KLNANRRQ DPD+ TCSLSEILERRRK DMVERS   NNTNS
Sbjct: 121 ISNIRKQYIDTRTQANLCKLNANRRQADPDMLTCSLSEILERRRKLDMVERSMC-NNTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           +G S SIWGSP L+EIG+KWTPMVVTFGVVLI+LWASFLLFDISLS HN+FVILYNNRKL
Sbjct: 181 QGASSSIWGSPCLQEIGLKWTPMVVTFGVVLIILWASFLLFDISLSQHNEFVILYNNRKL 240

Query: 241 F 242
           F
Sbjct: 241 F 240

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BLAST of CsaV3_3G017070 vs. NCBI nr
Match: XP_022968542.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 380.6 bits (976), Expect = 1.0e-101
Identity = 191/242 (78.93%), Postives = 210/242 (86.78%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDG+P+AQGIRYVNEENDDV GYK+QAEFILKEISRG LS PKM I MHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYL+ENGVCYMTLCDS YPRKLAIHYLQDLQ+EF KFDDAL+N L+KPYSF KFD+I
Sbjct: 61  HSFIYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKPYSFPKFDNI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKF-DMVERSRSNNNTN 180
           ISN+RK+YIDTRTQ NL KLN +R Q D DI TCS+SEI ERRRK  DMVERS  N    
Sbjct: 121 ISNIRKRYIDTRTQVNLYKLNDSRSQTDLDIVTCSISEIFERRRKITDMVERSICN---- 180

Query: 181 SEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRK 240
              NS SIW   +++EIG+KWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNRK
Sbjct: 181 --ANSSSIWSFSFVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRK 236

Query: 241 LF 242
           LF
Sbjct: 241 LF 236

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BLAST of CsaV3_3G017070 vs. NCBI nr
Match: XP_031737818.1 (25.3 kDa vesicle transport protein isoform X2 [Cucumis sativus])

HSP 1 Score: 376.3 bits (965), Expect = 2.0e-100
Identity = 198/242 (81.82%), Postives = 198/242 (81.82%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGI                                        
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIS--------------------------------------- 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
               YLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI
Sbjct: 61  ----YLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS
Sbjct: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 199

Query: 241 FP 243
           FP
Sbjct: 241 FP 199

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot
Match: Q94AU2 (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.9e-32
Identity = 79/216 (36.57%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVK+T++ RV DGLP+A+G+    +  D    YK+Q + + K +SRG     +M +    
Sbjct: 1   MVKMTLIARVTDGLPLAEGLDDGRDLPDSDM-YKQQVKALFKNLSRGQNDASRMSVETGP 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           + F Y++E  VCY+T+CD SYP+KLA  YL+DL+ EF + +   I    +PY+F+KFD+ 
Sbjct: 61  YVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTF 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           I   +K Y DTRTQ N++KLN    +    I T ++ E+L    K D V  S  ++   S
Sbjct: 121 IQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQV--SEMSSRLTS 180

Query: 181 EGNSCSIWGSPYLEEIGV-KWTPMVVTFGVVLIVLW 216
           E    +        +  + KW P+ + FGVV ++ W
Sbjct: 181 ESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot
Match: Q7SXP0 (Vesicle-trafficking protein SEC22b-B OS=Danio rerio OX=7955 GN=sec22bb PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-25
Identity = 62/181 (34.25%), Postives = 106/181 (58.56%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MV LTM+ R+ DGLP+A  ++   +   D+  Y+ QA+ + ++++    SP +  +    
Sbjct: 1   MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLNE--QSPNRCTLEAGS 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
            SF Y++E GVCY+ LC++ +P+KLA  YL+DLQ EF +     +  + +PYSF++FD+ 
Sbjct: 61  MSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTY 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           I   +K YID+R + NLS +N    Q    I   ++ E+L+R      ++   SN ++ S
Sbjct: 121 IQKTKKSYIDSRARRNLSNIN-TELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSLS 178

Query: 181 E 182
           +
Sbjct: 181 K 178

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot
Match: Q5ZJW4 (Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-25
Identity = 61/176 (34.66%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MV LTM+ RV DGLP+A  ++   +   D+  Y+ QA+ + ++++    SP +  +    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNE--QSPTRCTLEAGA 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
            +F Y++E GVCY+ LC++++P+KLA  YL+DLQ EF +     +  + +PYSF++FD+ 
Sbjct: 61  MAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTY 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNN 177
           I   +K YID+R + NL  +N    Q    I   ++ E+L+R      ++ S++NN
Sbjct: 121 IQKTKKLYIDSRARRNLGSIN-TELQDVQRIMVANIEEVLQRGEALSALD-SKANN 172

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot
Match: Q6P7L4 (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis OX=8364 GN=sec22b PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 63/181 (34.81%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MV LTM+ RV DGLP+A  ++   +   D+  Y+ QA+ + ++++    SP +  +    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLNE--QSPTRCTLEAGA 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
            +F YL+E GVCY+ LC++++P+KLA  YL+DL  EF +     +  + +PYSF++FD+ 
Sbjct: 61  MTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNY 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           I   +K YID+R + NLS +N    Q    I   ++ E+L R      ++   SN +T S
Sbjct: 121 IQKTKKSYIDSRARRNLSSVN-TELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLS 178

Query: 181 E 182
           +
Sbjct: 181 K 178

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot
Match: O08547 (Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 60/176 (34.09%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MV LTM+ RV DGLP+A  ++   +   D+  Y+ QA+ + ++++    SP +  +    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNE--QSPTRCTLEAGA 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
            +F Y++E GVCY+ LC++++P+KLA  YL+DL  EF +     +  + +PYSF++FD+ 
Sbjct: 61  MTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTF 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNN 177
           I   +K YID+R + NL  +N    Q    I   ++ E+L+R      ++ S++NN
Sbjct: 121 IQKTKKLYIDSRARRNLGSIN-TELQDVQRIMVANIEEVLQRGEALSALD-SKANN 172

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL
Match: A0A0A0LBE2 (Longin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 3.8e-134
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI
Sbjct: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS
Sbjct: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240

Query: 241 FP 243
           FP
Sbjct: 241 FP 242

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL
Match: A0A1S3AYX3 (25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.4e-123
Identity = 226/242 (93.39%), Postives = 231/242 (95.45%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYLVENGVCYMTLCDSSYPRKLA+HYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI
Sbjct: 61  HSFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           ISNVRKQYIDTRTQ NL KLNANRRQPDPDI +CS SEILERRRK D+ ERSR   NTNS
Sbjct: 121 ISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKLDIEERSRC--NTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           +G S SIWGSPYLEEIG+KWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 QGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240

Query: 241 FP 243
           FP
Sbjct: 241 FP 240

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL
Match: A0A6J1HTS6 (25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467744 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.0e-102
Identity = 191/242 (78.93%), Postives = 210/242 (86.78%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDG+P+AQGIRYVNEENDDV GYK+QAEFILKEISRG LS PKM I MHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYL+ENGVCYMTLCDS YPRKLAIHYLQDLQ+EF KFDDAL+N L+KPYSF KFD+I
Sbjct: 61  HSFIYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKPYSFPKFDNI 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKF-DMVERSRSNNNTN 180
           ISN+RK+YIDTRTQ NL KLN +R Q D DI TCS+SEI ERRRK  DMVERS  N    
Sbjct: 121 ISNIRKRYIDTRTQVNLYKLNDSRSQTDLDIVTCSISEIFERRRKITDMVERSICN---- 180

Query: 181 SEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRK 240
              NS SIW   +++EIG+KWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNRK
Sbjct: 181 --ANSSSIWSFSFVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRK 236

Query: 241 LF 242
           LF
Sbjct: 241 LF 236

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL
Match: A0A6J1FZ74 (25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449240 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.1e-100
Identity = 189/242 (78.10%), Postives = 206/242 (85.12%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDG+P+AQGIRYVNEENDDV GYK+QAEFILKEISRG LSPPKMVI MHH
Sbjct: 44  MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSPPKMVIQMHH 103

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYL+ENGVCYMTLCDS YPRKLAIHYLQDLQ+EF KFDDAL+N L+KPYSFLKFD+I
Sbjct: 104 HSFIYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKPYSFLKFDNI 163

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKF-DMVERSRSNNNTN 180
           I N+RK+YIDTRTQ NL KLN  R Q D D+ TCS  EI ERRRK  D  ERS  N    
Sbjct: 164 IINIRKRYIDTRTQVNLYKLNDGRGQTDLDMVTCSFFEIFERRRKITDRAERSICN---- 223

Query: 181 SEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRK 240
              NS SIW    ++EIG+KWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNRK
Sbjct: 224 --ANSSSIWSFSIVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRK 279

Query: 241 LF 242
           LF
Sbjct: 284 LF 279

[Close]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL
Match: A0A1S4DTG2 (25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.1e-92
Identity = 183/242 (75.62%), Postives = 187/242 (77.27%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           HSFIYLVENGVCYMTLCDSSYPRKLA+HYLQDLQKEFGKFDDALINKLIKPYSFL     
Sbjct: 61  HSFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEFGKFDDALINKLIKPYSFL----- 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
                                                       KFD+ ERSR   NTNS
Sbjct: 121 --------------------------------------------KFDIEERSRC--NTNS 180

Query: 181 EGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 240
           +G S SIWGSPYLEEIG+KWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL
Sbjct: 181 QGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNRKL 191

Query: 241 FP 243
           FP
Sbjct: 241 FP 191

[Close]

BLAST of CsaV3_3G017070 vs. TAIR 10
Match: AT5G52270.1 (SNARE-like superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 7.0e-48
Identity = 99/174 (56.90%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVF-GYKKQAEFILKEISRGTLSPPKMVILMH 60
           MVKLT+VGRV DGLP+AQ   YVN+E++  F  YK+QAEF+LK++S+ +L  PKM IL+ 
Sbjct: 1   MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLD 60

Query: 61  HHSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDD-ALINKLIKPYSFLKFD 120
           HHSF +LVE  +CY+ L DSSYPRKL  +YLQ+L KE  K D+ ALI K+ KPYSF++F 
Sbjct: 61  HHSFHFLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRFG 120

Query: 121 SIISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERS 173
            II  +RKQYIDTRTQANLSKLNA R+Q + D+ T  L++I++R++   ++  S
Sbjct: 121 KIIGRIRKQYIDTRTQANLSKLNALRKQ-ELDVVTEHLNDIIQRQQILGVLRSS 173

[Close]

BLAST of CsaV3_3G017070 vs. TAIR 10
Match: AT1G11890.1 (Synaptobrevin family protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.9e-33
Identity = 79/216 (36.57%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60
           MVK+T++ RV DGLP+A+G+    +  D    YK+Q + + K +SRG     +M +    
Sbjct: 1   MVKMTLIARVTDGLPLAEGLDDGRDLPDSDM-YKQQVKALFKNLSRGQNDASRMSVETGP 60

Query: 61  HSFIYLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDSI 120
           + F Y++E  VCY+T+CD SYP+KLA  YL+DL+ EF + +   I    +PY+F+KFD+ 
Sbjct: 61  YVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTF 120

Query: 121 ISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKFDMVERSRSNNNTNS 180
           I   +K Y DTRTQ N++KLN    +    I T ++ E+L    K D V  S  ++   S
Sbjct: 121 IQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQV--SEMSSRLTS 180

Query: 181 EGNSCSIWGSPYLEEIGV-KWTPMVVTFGVVLIVLW 216
           E    +        +  + KW P+ + FGVV ++ W
Sbjct: 181 ESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

The following BLAST results are available for this feature:

BLAST of CsaV3_3G017070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651150.1	7.9e-134	100.00	25.3 kDa vesicle transport protein isoform X1 [Cucumis sativus] >KGN57371.1 hypo...	[more]
XP_008439222.1	2.8e-123	93.39	PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo]	[more]
XP_038875892.1	8.5e-112	86.31	25.3 kDa vesicle transport protein [Benincasa hispida]	[more]
XP_022968542.1	1.0e-101	78.93	25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima]	[more]
XP_031737818.1	2.0e-100	81.82	25.3 kDa vesicle transport protein isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_3G017070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU2	6.9e-32	36.57	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2...	[more]
Q7SXP0	8.2e-25	34.25	Vesicle-trafficking protein SEC22b-B OS=Danio rerio OX=7955 GN=sec22bb PE=2 SV=1	[more]
Q5ZJW4	8.2e-25	34.66	Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1	[more]
Q6P7L4	1.4e-24	34.81	Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis OX=8364 GN=sec22b PE=2 ...	[more]
O08547	2.4e-24	34.09	Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3	[more]

BLAST of CsaV3_3G017070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBE2	3.8e-134	100.00	Longin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3...	[more]
A0A1S3AYX3	1.4e-123	93.39	25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1HTS6	5.0e-102	78.93	25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FZ74	2.1e-100	78.10	25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S4DTG2	2.1e-92	75.62	25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CsaV3_3G017070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52270.1	7.0e-48	56.90	SNARE-like superfamily protein	[more]
AT1G11890.1	4.9e-33	36.57	Synaptobrevin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010908	Longin domain	SMART	SM01270	Longin_2	coord: 40..120 e-value: 2.9E-18 score: 76.7
IPR010908	Longin domain	PFAM	PF13774	Longin	coord: 37..118 e-value: 1.4E-17 score: 63.5
IPR010908	Longin domain	PROSITE	PS50859	LONGIN	coord: 6..121 score: 21.799368
IPR010908	Longin domain	CDD	cd14824	Longin	coord: 5..128 e-value: 5.12416E-21 score: 83.0741
None	No IPR available	GENE3D	3.30.450.50	Longin domain	coord: 1..129 e-value: 3.7E-36 score: 125.9
None	No IPR available	PANTHER	PTHR45837:SF7	SNARE-LIKE SUPERFAMILY PROTEIN	coord: 1..222
IPR044565	Vesicle-trafficking protein Sec22	PANTHER	PTHR45837	VESICLE-TRAFFICKING PROTEIN SEC22B	coord: 1..222
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G017070.1	CsaV3_3G017070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
molecular_function	GO:0005484	SNAP receptor activity