CsaV3_3G008460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G008460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 7165555 .. 7167432 (+)
RNA-Seq Expression	CsaV3_3G008460
Synteny	CsaV3_3G008460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAGCAATTGCATAAATTTGAAACAATTAATTGTGAAGGTTTTGACTTTGGGGTCCAAACCTTCTGCTCAAGGGAACAACACAAATTCATGTTAATTTTTGTTCTCTATTTTCGACTTGTGTTTCTAAGTTTAAGCTGATGTATTACAATAAAAGCATTAACAAAAACTTGTGACATATTTTCAGGTAAAAGACATGGTGGAAGGTATGGGAAATGAAAATGATTTTAAAGACAAACAAGAAATGAGAGAAGATCATAACAATGGAGAAGATATTGTAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGTTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAAAATGAAAGAGATTGAAGATAGCACGACATATAATATTGCAAAATCGAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGTCGTCGAAAAGTACCTCAAAGACTTCATACAACAATAAAAGATCACAGGTAATTTCTACTATATTTGAAATAACTCATAATTTAAAGGAAAAAAAAGAGTATAATTGTAACTAACATAATCTTTATGTGATTTCTACAATTTGTCCAAAACGGTAAAACTATTATTAATTTTTTTTACAGGCATGGAAGAAAAATGTGAATCAATCAATGGAGAGAGACGAATGGATATTAAAAAGAGATGGGAATAACTAATATAGACAACCACTTTTATAAAAGTTTTGGCACAATCAACCCATGAAGAAGATAGCACAAGTGATGTTGACATTCTTCATGTACAATGACATGTTTTTATCAGTAAGATAGGGCTAATTTGCTCGTCAAACGAAAAATTCGATATAACAGTCTTTGTAATTTTTATTTTTAATATAAAAATGAAATATGAAATTTTGAACTTTCAACTTTGAGATATATAGTAAATATCATTATCGTTAACGTGACAGTTTGATACAAACAATGAGAACATTCTAGACAAAGTTGTTGGTGTTGATACATGGTCCAATCACACCACGGAAACTCGAGCCATACTTATTTTAAAAGATTAGGTGAAGGGGTTTCTCCTTCTTAAGTCAACTTGATGGAGATACATGACTGTGTCCCTCTTTTACTCGAAAAGCCATCTTCACTCTTCTATTCGAGACCTTTGAAAGAGGAATAAAGAAACGATGGTCTTTCTATAATAAAGTAAGCATAAGGTTCCCGCACGAACATGCACA

mRNA sequence

ATGGTGGAAGGTATGGGAAATGAAAATGATTTTAAAGACAAACAAGAAATGAGAGAAGATCATAACAATGGAGAAGATATTGTAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGTTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAAAATGAAAGAGATTGAAGATAGCACGACATATAATATTGCAAAATCGAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGTCGTCGAAAAGTACCTCAAAGACTTCATACAACAATAAAAGATCACAGGCATGGAAGAAAAATGTGA

Coding sequence (CDS)

ATGGTGGAAGGTATGGGAAATGAAAATGATTTTAAAGACAAACAAGAAATGAGAGAAGATCATAACAATGGAGAAGATATTGTAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGTTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAAAATGAAAGAGATTGAAGATAGCACGACATATAATATTGCAAAATCGAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGTCGTCGAAAAGTACCTCAAAGACTTCATACAACAATAAAAGATCACAGGCATGGAAGAAAAATGTGA

Protein sequence

MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSNDGNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM*

Homology

[Close]

BLAST of CsaV3_3G008460 vs. NCBI nr
Match: KGN56466.1 (hypothetical protein Csa_011060 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60
           MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND
Sbjct: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 118
           GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM
Sbjct: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 117

[Close]

BLAST of CsaV3_3G008460 vs. NCBI nr
Match: KAG6597110.1 (hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 9.7e-21
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MVEGMGNENDFKDKQEMRED------HNNGEDIVES-SSSSSFLPDLNLLFVFLSLISPN 60
           M E   NE+D K++QEMR+D       N G        SSSSFLP++NL+FV LSL+S  
Sbjct: 2   MEETRSNESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS-- 61

Query: 61  TNEDSNDGNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRH 118
            +EDSN   G   K KE+E  TTYNIA+SS++KKDVIEA+ E RR+V QR HTTIKDHRH
Sbjct: 62  -HEDSNGEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE-RRRVAQRFHTTIKDHRH 121

[Close]

BLAST of CsaV3_3G008460 vs. NCBI nr
Match: KAG7028573.1 (hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 69/124 (55.65%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MVEGMGNENDFKDKQEMRED------HNNGEDIVES-SSSSSFLPDLNLLFVFLSLISPN 60
           M E   NE+D K++QEMR+D       N G        SSSSFLP++NL+FV LSL+S  
Sbjct: 1   MEETRSNESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS-- 60

Query: 61  TNEDSNDGNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRH 118
            +E+SN   G   K KE+E  TTYNIA+SS++KKDVIEA+ E R +V QR HTTIKDHRH
Sbjct: 61  -HENSNGEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE-RPRVAQRFHTTIKDHRH 120

[Close]

BLAST of CsaV3_3G008460 vs. ExPASy TrEMBL
Match: A0A0A0L8Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60
           MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND
Sbjct: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 118
           GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM
Sbjct: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 117

The following BLAST results are available for this feature:

BLAST of CsaV3_3G008460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56466.1	3.5e-55	100.00	hypothetical protein Csa_011060 [Cucumis sativus]	[more]
KAG6597110.1	9.7e-21	57.26	hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028573.1	2.4e-19	55.65	hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_3G008460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G008460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Q3	1.7e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1	[more]

BLAST of CsaV3_3G008460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G008460.1	CsaV3_3G008460.1	mRNA