CsaV3_3G008380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G008380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 7128996 .. 7129442 (-)
RNA-Seq Expression	CsaV3_3G008380
Synteny	CsaV3_3G008380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACAAATTCTTCACGGAAATCTGATTTAATTACAGTAGAAATAAAAAATCAATGCAGAAAACGAGACGAAGAAAAAGGAACCGAATCAATTCAGTTAATCAGTCAAATACATGCATCGCATTAAATAATATGAAATATAATAGAGAATTTCGTTTTCCTTGGGAAAGAAAGAAGGAGAAAATGGAATTCCATCTCATTGTAATGTGGAACTGAACCGAACATATCTCTGGGAATCAGGAGAACGGAAATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTC

mRNA sequence

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTC

Coding sequence (CDS)

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTC

Protein sequence

MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQCLSIDCV

Homology

[Close]

BLAST of CsaV3_3G008380 vs. NCBI nr
Match: KAE8650240.1 (hypothetical protein Csa_009627, partial [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 4.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCV 67
          LSIDCV
Sbjct: 61 LSIDCV 66

[Close]

BLAST of CsaV3_3G008380 vs. NCBI nr
Match: KAA0048920.1 (hypothetical protein E6C27_scaffold171G001390 [Cucumis melo var. makuwa] >TYK17648.1 hypothetical protein E5676_scaffold434G005200 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEE+DEYHL GEPVT DPPEFRSSDEKKLMENARVRQRRK  SESCDGGGNLGMQ 
Sbjct: 1  MIKKEEEEDEYHLIGEPVTGDPPEFRSSDEKKLMENARVRQRRK-KSESCDGGGNLGMQG 60

Query: 61 LSIDCV 67
          LSIDCV
Sbjct: 61 LSIDCV 65

[Close]

BLAST of CsaV3_3G008380 vs. ExPASy TrEMBL
Match: A0A0A0L794 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120360 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCV 67
          LSIDCV
Sbjct: 61 LSIDCV 66

[Close]

BLAST of CsaV3_3G008380 vs. ExPASy TrEMBL
Match: A0A5D3D2C8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005200 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEE+DEYHL GEPVT DPPEFRSSDEKKLMENARVRQRRK  SESCDGGGNLGMQ 
Sbjct: 1  MIKKEEEEDEYHLIGEPVTGDPPEFRSSDEKKLMENARVRQRRK-KSESCDGGGNLGMQG 60

Query: 61 LSIDCV 67
          LSIDCV
Sbjct: 61 LSIDCV 65

The following BLAST results are available for this feature:

BLAST of CsaV3_3G008380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650240.1	4.6e-28	100.00	hypothetical protein Csa_009627, partial [Cucumis sativus]	[more]
KAA0048920.1	4.9e-22	90.91	hypothetical protein E6C27_scaffold171G001390 [Cucumis melo var. makuwa] >TYK176...	[more]

BLAST of CsaV3_3G008380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G008380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L794	2.2e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120360 PE=4 SV=1	[more]
A0A5D3D2C8	2.4e-22	90.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_3G008380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G008380.1	CsaV3_3G008380.1	mRNA