CsaV3_3G008250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G008250
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGlycosyltransferase family 28 protein
Locationchr3: 7057589 .. 7058136 (-)
RNA-Seq ExpressionCsaV3_3G008250
SyntenyCsaV3_3G008250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTGATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGATTTTCCTTATTTAATTTTCGCTTCATTTTCATTACAGTTTTTCGATCTTTGTGTATTAGTCTAATAAACTTCCGTTATATATCATCAACTCAAGATTTGGTCATATAAATGCATATTATTGTCATCATTGAAAATCAAATTGTGTGGTTATTATATTATAATATACCGTTTGATATATA

mRNA sequence

ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA

Coding sequence (CDS)

ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA

Protein sequence

MNIKLNNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV*
Homology
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAE8650237.1 (hypothetical protein Csa_011169 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MNIKLNNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH 60
           MNIKLNNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH
Sbjct: 1   MNIKLNNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH 60

Query: 61  FHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 120
           FHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV
Sbjct: 61  FHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 120

BLAST of CsaV3_3G008250 vs. NCBI nr
Match: TYK17659.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 8.4e-44
Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 0

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           M  + SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   P
Sbjct: 1   MRDQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
           PPP + +N S +KKPPAV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 61  PPPPSAVNGSFKKKPPAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAA0048909.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 14  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPSA 73
           SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   PPPP +
Sbjct: 6   SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPS 65

Query: 74  VINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
            +N S +KKPPAV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 66  AVNGSFKKKPPAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAG6597095.1 (Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+A PPP++ GSRR  SNKVS  HFS + P
Sbjct: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVS--HFSDIMP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRF 104
            PP  +  ++L+KKP   V E+KNKLKKFK+T+ F
Sbjct: 61  SPP--LSTSTLKKKP---VGEMKNKLKKFKTTYTF 88

BLAST of CsaV3_3G008250 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 13  LSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPS 72
           L++WDCGSPLYDSYELAS++HLI+R+L+AFP     GS +    K SH   S  T    +
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSSSSKTTSTTST 74

Query: 73  AVINA----SLEK------------KPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 118
            +  A    S+E+            K   +    K K KK K+T  FS   +RFGLWRKK
Sbjct: 75  TMKEAKGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKK 132

BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A0A0L377 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
           PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A5D3D3M1 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005310 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.1e-44
Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 0

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           M  + SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   P
Sbjct: 1   MRDQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
           PPP + +N S +KKPPAV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 61  PPPPSAVNGSFKKKPPAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A5A7U611 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001280 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.9e-44
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 14  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPSA 73
           SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   PPPP +
Sbjct: 6   SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPS 65

Query: 74  VINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
            +N S +KKPPAV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 66  AVNGSFKKKPPAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A2P6SIA6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 13  LSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPS 72
           L++WDCGSPLYDSYELAS++HLI+R+L+AFP     GS +    K SH   S  T    +
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSSSSKTTSTTST 74

Query: 73  AVINA----SLEK------------KPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 118
            +  A    S+E+            K   +    K K KK K+T  FS   +RFGLWRKK
Sbjct: 75  TMKEAKGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKK 132

BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A498KNX4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011859 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 8   KMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH------- 67
           ++  EL VWDCGSPLYDSYEL S++HLI+R+L+A P     GSRR  +N  +H       
Sbjct: 6   RVNEELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMAS 65

Query: 68  -----FHFSHLTPPPPSAVINASLEK--KPPAVVDELKNKLKKFKSTFRFSSISNRFGLW 117
                   S       S+  N  + K  K      E K+K KK K   RFS   N  GLW
Sbjct: 66  TVSSDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLW 125

BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT3G61660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 15 VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAG 50
          +WDCGSPLYDSYEL SL H+I+R+ ++ P    AG
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLPSLAGAG 43

BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT2G46375.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 11 RELSVWDCGSPLYDSYELASLAHLIDRNLLAFPP 45
          R+  +WDC S LYDSYEL S  H+I+R L+ F P
Sbjct: 19 RDPKIWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT5G41810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits to 690 proteins in 132 species: Archae - 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0

Query: 2   NIKLNNKMMRELS--VWDCGSPLYDSYELASLAHLIDRNLLAFP----PPYHAGSRRITS 61
           N  L+N   ++ S  VWDCGS LYDS+EL S    +D  + A         H   RRI S
Sbjct: 107 NNNLSNMKHKKTSSHVWDCGSTLYDSFELNSFKRQLDSAISASSARTMSMSHLPDRRIPS 166

Query: 62  NKVSHFHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKF-KSTFR 103
                  +S   PPPP+   ++S   K  +  +++   L++F KS F+
Sbjct: 167 LSSLSPEYSPPLPPPPTTSSSSSSGGKKHS--NKISRSLQRFLKSMFK 212

BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT5G41810.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0

Query: 2   NIKLNNKMMRELS--VWDCGSPLYDSYELASLAHLIDRNLLAFP----PPYHAGSRRITS 61
           N  L+N   ++ S  VWDCGS LYDS+EL S    +D  + A         H   RRI S
Sbjct: 98  NNNLSNMKHKKTSSHVWDCGSTLYDSFELNSFKRQLDSAISASSARTMSMSHLPDRRIPS 157

Query: 62  NKVSHFHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKF-KSTFR 103
                  +S   PPPP+   ++S   K  +  +++   L++F KS F+
Sbjct: 158 LSSLSPEYSPPLPPPPTTSSSSSSGGKKHS--NKISRSLQRFLKSMFK 203

BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT1G64340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 32/109 (29.36%), Postives = 46/109 (42.20%), Query Frame = 0

Query: 1   MNIKLNNK------MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRIT 60
           MN KLN +       M+   VWDC S LYDS+EL S    ++  +               
Sbjct: 102 MNPKLNTEESTNLDKMKNRKVWDCESTLYDSFELNSFNRQLNSAI--------------- 161

Query: 61  SNKVSHFHFSHLTPPPPSAVINASLEKKPPAVVDELKNKL-KKFKSTFR 103
           S+        HL+ PPP +   +S  KK  +   ++   L K  KS F+
Sbjct: 162 SSSARSMSMPHLSSPPPPSETTSSSTKKQQSPTKKISRSLGKLIKSMFK 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650237.13.1e-62100.00hypothetical protein Csa_011169 [Cucumis sativus][more]
TYK17659.18.4e-4478.57glycosyltransferase family 28 protein [Cucumis melo var. makuwa][more]
KAA0048909.11.4e-4381.31glycosyltransferase family 28 protein [Cucumis melo var. makuwa][more]
KAG6597095.11.6e-2364.21Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. so... [more]
PRQ58407.15.5e-1142.15hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3778.4e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1[more]
A0A5D3D3M14.1e-4478.57Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7U6116.9e-4481.31Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A2P6SIA62.7e-1142.15Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4... [more]
A0A498KNX43.8e-1040.65Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011859 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61660.11.8e-0760.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46375.11.5e-0655.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41810.16.3e-0533.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41810.26.3e-0533.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G64340.13.1e-0429.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978SERINE/THREONINE-KINASEcoord: 7..116
NoneNo IPR availablePANTHERPTHR33978:SF14SUBFAMILY NOT NAMEDcoord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G008250.1CsaV3_3G008250.1mRNA