CsaV3_3G008250 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTGATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGATTTTCCTTATTTAATTTTCGCTTCATTTTCATTACAGTTTTTCGATCTTTGTGTATTAGTCTAATAAACTTCCGTTATATATCATCAACTCAAGATTTGGTCATATAAATGCATATTATTGTCATCATTGAAAATCAAATTGTGTGGTTATTATATTATAATATACCGTTTGATATATA ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA MNIKLNNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV* Homology
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAE8650237.1 (hypothetical protein Csa_011169 [Cucumis sativus]) HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: TYK17659.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa]) HSP 1 Score: 187.2 bits (474), Expect = 8.4e-44 Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAA0048909.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa]) HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43 Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: KAG6597095.1 (Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23 Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis]) HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11 Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A0A0L377 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A5D3D3M1 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005310 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 4.1e-44 Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A5A7U611 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001280 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 6.9e-44 Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A2P6SIA6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11 Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. ExPASy TrEMBL
Match: A0A498KNX4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011859 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10 Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT3G61660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT2G46375.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06 Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT5G41810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits to 690 proteins in 132 species: Archae - 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05 Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT5G41810.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05 Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0
BLAST of CsaV3_3G008250 vs. TAIR 10
Match: AT1G64340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04 Identity = 32/109 (29.36%), Postives = 46/109 (42.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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