CsaV3_3G003780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G003780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	C2H2-type domain-containing protein
Location	chr3: 3184188 .. 3184526 (+)
RNA-Seq Expression	CsaV3_3G003780
Synteny	CsaV3_3G003780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGGGTGAAAATTGAGACTCATTCTGATCACGAGAGACTACTGAAAAAGAAAGTGCACTCAAACGAGAAGAAGAATGGAGCTCTTGAGAAGGAATATAAATGTGATGTATGCAGCAAAGTATTTACAACTTCAAGAGCATTGGGAGGACATAAGTCGAGTCATTACAAACCCAAAAAAACAAATGATGCTCCCATTAAAAAGGAAACTACAACCTCTGAACCGAAGATTATTACGATGTCATTAGATTCATCGACTGATCAAACCAATCAAAAGAGAGTGATGGATTTTGATCTCAACATGCAGCTACCACCAGACGACGAAGAAACATCCTGA

mRNA sequence

ATGAAAAGGGTGAAAATTGAGACTCATTCTGATCACGAGAGACTACTGAAAAAGAAAGTGCACTCAAACGAGAAGAAGAATGGAGCTCTTGAGAAGGAATATAAATGTGATGTATGCAGCAAAGTATTTACAACTTCAAGAGCATTGGGAGGACATAAGTCGAGTCATTACAAACCCAAAAAAACAAATGATGCTCCCATTAAAAAGGAAACTACAACCTCTGAACCGAAGATTATTACGATGTCATTAGATTCATCGACTGATCAAACCAATCAAAAGAGAGTGATGGATTTTGATCTCAACATGCAGCTACCACCAGACGACGAAGAAACATCCTGA

Coding sequence (CDS)

ATGAAAAGGGTGAAAATTGAGACTCATTCTGATCACGAGAGACTACTGAAAAAGAAAGTGCACTCAAACGAGAAGAAGAATGGAGCTCTTGAGAAGGAATATAAATGTGATGTATGCAGCAAAGTATTTACAACTTCAAGAGCATTGGGAGGACATAAGTCGAGTCATTACAAACCCAAAAAAACAAATGATGCTCCCATTAAAAAGGAAACTACAACCTCTGAACCGAAGATTATTACGATGTCATTAGATTCATCGACTGATCAAACCAATCAAAAGAGAGTGATGGATTTTGATCTCAACATGCAGCTACCACCAGACGACGAAGAAACATCCTGA

Protein sequence

MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPKKTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS*

Homology

[Close]

BLAST of CsaV3_3G003780 vs. NCBI nr
Match: KGN56002.2 (hypothetical protein Csa_011010 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 8.4e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60
           MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK
Sbjct: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60

Query: 61  KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 113
           KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS
Sbjct: 61  KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 112

[Close]

BLAST of CsaV3_3G003780 vs. NCBI nr
Match: XP_011652725.1 (putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 8.4e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60
           MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK
Sbjct: 252 MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 311

Query: 61  KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 113
           KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS
Sbjct: 312 KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 363

[Close]

BLAST of CsaV3_3G003780 vs. NCBI nr
Match: TYK19398.1 (TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-19
Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 2   KRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPKK 61
           KRVK ETHSDHE+ ++ K     K NG LEK+YKC++CSKVF + +ALGGHKS HYK  K
Sbjct: 127 KRVKTETHSDHEKSVRAK---ENKNNGVLEKKYKCNMCSKVFASPKALGGHKSGHYKANK 186

Query: 62  TNDAPIKKET------TTSEPKIITMSLDSSTDQTNQKR-VMDFDLNMQLPPDD 109
           T  A IKKE       TT EPKI+  ++ SSTD+T+QK  +MDFDLN +LPP +
Sbjct: 187 TVIA-IKKENANATIGTTIEPKIMVSTVASSTDRTDQKSLMMDFDLN-RLPPKE 235

[Close]

BLAST of CsaV3_3G003780 vs. NCBI nr
Match: KGN55980.1 (hypothetical protein Csa_011357 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 2   KRVKIETHSDHERLLK-KKVHSNE-KKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKP 61
           KRVK ETHSD+E      KVH  E K NGALEKEYKC++C KVFT  +ALGGHKS H K 
Sbjct: 113 KRVKTETHSDYEESSTIGKVHVKENKNNGALEKEYKCNMCRKVFTNPKALGGHKSGHNKA 172

Query: 62  KKTNDAPIKKET------TTSEPKIITMSLDSSTDQTNQKR-VMDFDLNMQLPPDD 109
            KT DA IKKET      T+ EPK      DSSTD T+ KR V+DFDLN +LPP++
Sbjct: 173 NKT-DAAIKKETASATIGTSFEPKPTMSMADSSTDPTDWKRPVLDFDLN-KLPPEE 226

[Close]

BLAST of CsaV3_3G003780 vs. NCBI nr
Match: XP_008449183.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 62/86 (72.09%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60
           MKR KIETHSDH+R LK       K  G   KEY CD CSKVFT  RALGGHKSSHYK  
Sbjct: 263 MKRSKIETHSDHKRPLK-------KNGGFGXKEYICDKCSKVFTNPRALGGHKSSHYKLN 322

Query: 61  KTNDAPIKKE-TTTSEPKIITMSLDS 86
           KTND PIKKE TTTSEPK ITMSLDS
Sbjct: 323 KTNDTPIKKETTTTSEPK-ITMSLDS 340

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy Swiss-Prot
Match: Q9SSW1 (Zinc finger protein AZF1 OS=Arabidopsis thaliana OX=3702 GN=AZF1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.2e-04
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 32  KEYKCDVCSKVFTTSRALGGHKSSHYKPKKTN 64
           ++YKC VC K F++ +ALGGHK+SH KP  T+
Sbjct: 95  RDYKCTVCGKSFSSYQALGGHKTSHRKPTNTS 126

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL
Match: A0A0A0L4M3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043950 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.0e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60
           MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK
Sbjct: 134 MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 193

Query: 61  KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 113
           KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS
Sbjct: 194 KTNDAPIKKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDEETS 245

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL
Match: A0A5D3D748 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00310 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.2e-19
Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 2   KRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPKK 61
           KRVK ETHSDHE+ ++ K     K NG LEK+YKC++CSKVF + +ALGGHKS HYK  K
Sbjct: 127 KRVKTETHSDHEKSVRAK---ENKNNGVLEKKYKCNMCSKVFASPKALGGHKSGHYKANK 186

Query: 62  TNDAPIKKET------TTSEPKIITMSLDSSTDQTNQKR-VMDFDLNMQLPPDD 109
           T  A IKKE       TT EPKI+  ++ SSTD+T+QK  +MDFDLN +LPP +
Sbjct: 187 TVIA-IKKENANATIGTTIEPKIMVSTVASSTDRTDQKSLMMDFDLN-RLPPKE 235

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL
Match: A0A0A0L1Z9 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043960 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 2   KRVKIETHSDHERLLK-KKVHSNE-KKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKP 61
           KRVK ETHSD+E      KVH  E K NGALEKEYKC++C KVFT  +ALGGHKS H K 
Sbjct: 113 KRVKTETHSDYEESSTIGKVHVKENKNNGALEKEYKCNMCRKVFTNPKALGGHKSGHNKA 172

Query: 62  KKTNDAPIKKET------TTSEPKIITMSLDSSTDQTNQKR-VMDFDLNMQLPPDD 109
            KT DA IKKET      T+ EPK      DSSTD T+ KR V+DFDLN +LPP++
Sbjct: 173 NKT-DAAIKKETASATIGTSFEPKPTMSMADSSTDPTDWKRPVLDFDLN-KLPPEE 226

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL
Match: A0A1S3BLH2 (LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 OS=Cucumis melo OX=3656 GN=LOC103491133 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 62/86 (72.09%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPK 60
           MKR KIETHSDH+R LK       K  G   KEY CD CSKVFT  RALGGHKSSHYK  
Sbjct: 263 MKRSKIETHSDHKRPLK-------KNGGFGXKEYICDKCSKVFTNPRALGGHKSSHYKLN 322

Query: 61  KTNDAPIKKE-TTTSEPKIITMSLDS 86
           KTND PIKKE TTTSEPK ITMSLDS
Sbjct: 323 KTNDTPIKKETTTTSEPK-ITMSLDS 340

[Close]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL
Match: A0A6J1CQU4 (zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 8   THSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPKKTNDAPI 67
           ++ +H+   KKKVH            Y+C+VC K F + +ALGGHKSSHYKP+KT+    
Sbjct: 91  SNDEHDSSSKKKVH-----------VYRCNVCGKEFWSPQALGGHKSSHYKPEKTD---F 150

Query: 68  KKETTTSEPKIITMSLDSSTDQTNQKRVMDFDLNMQLPPDDE 110
             +T++S                  +R +DFDLN +LPP D+
Sbjct: 151 VVQTSSS-----------------GRRTVDFDLN-ELPPMDD 160

[Close]

BLAST of CsaV3_3G003780 vs. TAIR 10
Match: AT5G67450.1 (zinc-finger protein 1 )

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-05
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 32  KEYKCDVCSKVFTTSRALGGHKSSHYKPKKTN 64
           ++YKC VC K F++ +ALGGHK+SH KP  T+
Sbjct: 95  RDYKCTVCGKSFSSYQALGGHKTSHRKPTNTS 126

[Close]

BLAST of CsaV3_3G003780 vs. TAIR 10
Match: AT3G49930.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 23/50 (46.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 10  SDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKP 60
           SDH  L     H         +K+YKC VC K F + +ALGGHK+SH KP
Sbjct: 79  SDHHSLSPLSDH---------QKDYKCSVCGKSFPSYQALGGHKTSHRKP 119

[Close]

BLAST of CsaV3_3G003780 vs. TAIR 10
Match: AT1G27730.1 (salt tolerance zinc finger )

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 29  ALEK-EYKCDVCSKVFTTSRALGGHKSSHYK 59
           A+EK  YKC VC K F++ +ALGGHK+SH K
Sbjct: 74  AVEKLSYKCSVCDKTFSSYQALGGHKASHRK 104

[Close]

BLAST of CsaV3_3G003780 vs. TAIR 10
Match: AT5G61470.1 (C2H2-like zinc finger protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 21  HSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSH-YKPKKTND 65
           +  ++K G  + +Y CD C KV  + +ALGGH++SH YK  K +D
Sbjct: 215 YGGKRKRGKKQSKYTCDTCGKVLRSYQALGGHRTSHKYKRLKISD 259

[Close]

BLAST of CsaV3_3G003780 vs. TAIR 10
Match: AT1G02030.1 (C2H2-like zinc finger protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 24  EKKNGALEKEYKCDVCSKVFTTSRALGGHKSSH 57
           +KK  +    ++C +C+KVFT+ +ALGGHK SH
Sbjct: 199 KKKKKSTSSHHECPICAKVFTSGQALGGHKRSH 231

The following BLAST results are available for this feature:

BLAST of CsaV3_3G003780 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56002.2	8.4e-54	100.00	hypothetical protein Csa_011010 [Cucumis sativus]	[more]
XP_011652725.1	8.4e-54	100.00	putative protein TPRXL [Cucumis sativus]	[more]
TYK19398.1	6.7e-19	57.02	TPRXL protein [Cucumis melo var. makuwa]	[more]
KGN55980.1	3.3e-18	59.48	hypothetical protein Csa_011357 [Cucumis sativus]	[more]
XP_008449183.1	4.3e-18	72.09	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 [Cucumis me...	[more]

BLAST of CsaV3_3G003780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSW1	8.2e-04	56.25	Zinc finger protein AZF1 OS=Arabidopsis thaliana OX=3702 GN=AZF1 PE=2 SV=1	[more]

BLAST of CsaV3_3G003780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M3	4.0e-54	100.00	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043950 P...	[more]
A0A5D3D748	3.2e-19	57.02	TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00310 ...	[more]
A0A0A0L1Z9	1.6e-18	59.48	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043960 P...	[more]
A0A1S3BLH2	2.1e-18	72.09	LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 OS=Cucumis melo OX=365...	[more]
A0A6J1CQU4	2.2e-04	37.25	zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=...	[more]

BLAST of CsaV3_3G003780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67450.1	5.9e-05	56.25	zinc-finger protein 1	[more]
AT3G49930.1	1.3e-04	46.00	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G27730.1	3.8e-04	61.29	salt tolerance zinc finger	[more]
AT5G61470.1	3.8e-04	42.22	C2H2-like zinc finger protein	[more]
AT1G02030.1	5.0e-04	48.48	C2H2-like zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 34..58 e-value: 7.1E-10 score: 38.7
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 8..95 e-value: 5.4E-7 score: 31.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
None	No IPR available	PANTHER	PTHR45988:SF18	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY	coord: 18..110
IPR044653	C2H2-type zinc-finger protein AZF1/2/3-like	PANTHER	PTHR45988	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED	coord: 18..110
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 36..56
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 34..61 score: 11.156685
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 31..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G003780.1	CsaV3_3G003780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity