CsaV3_3G003450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G003450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription initiation factor TFIID subunit 11
Location	chr3: 2850794 .. 2853874 (+)
RNA-Seq Expression	CsaV3_3G003450
Synteny	CsaV3_3G003450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTAAACTAATAACAAAACTAAAACGATTTTGAAAAATAAAAAAAAAACCCCGAAGTCTATCGTTCATTCCCATTCTCTTCCCACACCCCATTCGGCGAACTATCTCACTCCTCATCGCCCGGCACAAACTACATCAGATCGTTCCTTGCGATCATTTTTAACCTAATTAGAAACATTTCACAAGAATGAAGCAATCGAAGGATCCATTTGAAGCCGCCTTCGAAGAGCAGGAGGAATCACCTCCGAACTCTCCTTCTGCTGCCGACGACCTCGAAATTCCGACCACTGTAGCCCCTTCTCCTGCCGACGCTTTTGATTTGCAAGACGGTGATGATGATCCAAAATCCGCTTCTGTCGCTACACATTCCGTTGCTCCTGCGTCCACCACTTCTATGTTTGTTTCCTCTTCCTCCCATGTATCTACCGCCCCTAAAACCAAAGAAGACGACGAGGAAGAAGAGGAAGAGAATGTTGAAGTTGAACTTGCAAAATTTCCCTCCAGCGGTGATCCGGATAAGATGGCAAAGATGCAGTATGTTCTCTTGGACCTCTCATATATAATTTTAAATTGGTTTTTCTGCTTCAAGATGAGCTAGCATAGTCTCAATGTTTACCCTTGTGGGAAAAAAGTACTCGATTTACTTGATGTTTAAAATGTTGGTAGCATGTAGCCCTTTGGTCGGGTTATTATCAGTTGATTTACATGTGTTGATTATGAACTAATTCTTTATTTAGTTTCTCCAATAGAAAATTTAGGAAGATAGAAATTTACGAATCCCTAATGCCTGCCTATATTTTGCTTTTGGACCTGGTGTAGCGTTTGGATCTTGCTGTTTGATCTTCTTCCAAATTATTAGGTGTTCCCATTAAGAATAGTGCAATAGCCTTACATTGATGTTCTTCATCCAGAGATCCAAAAGATATCCTTTTCTCTGAGAAATCTCCGACCCCATTTGATTAGAAAAGCACGACTGTTTCTTAGTAGTGAGGTTGCTAATATCCAAACCTCCCATTTCAGTTGGAAGAGAGGTAGTTTCCCAATTAATCATATTAGTGACCCCGAACTCCTTACTACCTTTTCAGAAGAAGTCTCTAATAAGTTTCTCGAGCCAATTAATCACACTGTTGGGACAAAGAAATAGTAAAGTGGGATGCTAGCAAGAATAGACACAGCTGAAGTAATTTACCCCCCTCTAGAGGAGAAGATTCTTCCAATGCTACAAATATTAAGCCCAACCAAGAGAGTTTTTGAGAGATAAAACTCTTAAGCCTGACATCACCTCATAACCTGTAACTATGTTCTTCAAGTTATTGAACAGGGGTAGATTGTAGTTCGAAAAGCGAAGCGTGTCATCAGCAAATTACACCTCTCCATCTCTAATGGGAAGGTCCTTCATGAAGTCATCCCTCAGAACTTTGTTAATAAGCCTGCCAAAGACATCCACTATCAACATGAAAGAGAGAGGGGCAAGCGGAACACCTTGCCTAAGCCCTTTAGCAGCTTTGATTTGTCCTCTTGGATCATAATAGAGGAGGTGTTAGAATGTTAGTCATAGAAGCTTTGATCCAACCAATCCAATGACCGCCATAGCCTTTACAATTTAGCACCTCAAGGAGAAAGTCCTAGATTCCTACCCAACCATATCCAAAGGCCCCTTCTCAAAATCCAGCTTGATGAAAACCCAACCCTTCTTCTTTCTATTAATAAAACCATCAAAAAACTTGTAAGCAACCAAAATCAAGAATTTGTCTTTTTTTCCTTTTTCTTCTTCCTTTTGTTGTGCCTGCAACTTTAAAGATGAATATGCTAGATCATTTTTACTTTGGTATCTTTTTGAGTGAACTAACACATTATGAAATCTTCACTTAGAGAAAGAATCCTCTTGTAACTCGTCTTATCATTTTCCAGAGCAATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTTCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTATGGATCTTAATATTTTCTCTTTTCGAAAGACCATAGATAGCCAAGGAAGGTTGGGGTGGAATGCATTCTAGGTATTGGTTGGTTGGATGGTTTGTTTTATTATTATTTTTTCAATTTCTGGTCTGAGACGTTAATCTTTTTGAACTTGAACCTAGCTCATCTTGTTTCATTTCACTTGTAAGCTGTAGCTGTTAGCAAGCATCTCGGGAACACAGAAAATTTCTGTACCGATGACAATCGTTGTGTCTGGTATAGCAAAGATGTTTGTTGGTGAACTCGTAGAAACAGGTATGTAAAAACCCAATTCCATTGTTCTTTCCAGTTACTTTTCATGTCAATGTGAAACATAGACCTAAGAATCTGAATTTTTTTTAAAAAATCTAACTTATTTCAATACTTTTTATTTTGTTTCAGCAAGAGTTGTTATGACAGAGCGTAATGATACGGGACCTATCAGACCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCTAGGAAATCAGTGCCTAGGCTCTTTCGCTAATCACTCTGTTTAATTTAGGAGTTTTTGGAAGAAAATTTGAATACTACAGCATCAATATTAGGATGTTTATATATATATAACTGAAGTTCCTAACATATTTTTGTACGAATCGACTTCTCACTTTACTACATACACGAATTATTGGAAGGAGTAAAACACAAACATGGATTTTCCAGCACAACCTATACATTTAAATAGTAAAACACATTTGATGATTATATAGAGTTGGAATACAAAGACACATACTGGCGTGTTCGGGAGGATGGAATGAAATGAGTTTGTAATGGATTTTATTCCATGCCCATACAGATTTGAGCGTTTTGGGCTTGGTTTGTAATACTAAACTCATTTCTTTTTCACATTTTTCAATCCAACTATTTTCTTCGTAACGTTTCACTATCTCATTTTTGTTTTGCCCTCGATTATCCACTTATTCCAACTCTCCATATATTCCCACTAATCCTAATTATATTTCAATTTTCCTAAACCAGTATTTTGATAATAATAATACCCAATGTTGATATGTGACAATCTTAT

mRNA sequence

ATGAAGCAATCGAAGGATCCATTTGAAGCCGCCTTCGAAGAGCAGGAGGAATCACCTCCGAACTCTCCTTCTGCTGCCGACGACCTCGAAATTCCGACCACTGTAGCCCCTTCTCCTGCCGACGCTTTTGATTTGCAAGACGGTGATGATGATCCAAAATCCGCTTCTGTCGCTACACATTCCGTTGCTCCTGCGTCCACCACTTCTATGTTTGTTTCCTCTTCCTCCCATGTATCTACCGCCCCTAAAACCAAAGAAGACGACGAGGAAGAAGAGGAAGAGAATGTTGAAGTTGAACTTGCAAAATTTCCCTCCAGCGGTGATCCGGATAAGATGGCAAAGATGCAAGCAATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTTCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTATGGATCTTAATATTTTCTCTTTTCGAAAGACCATAG

Coding sequence (CDS)

ATGAAGCAATCGAAGGATCCATTTGAAGCCGCCTTCGAAGAGCAGGAGGAATCACCTCCGAACTCTCCTTCTGCTGCCGACGACCTCGAAATTCCGACCACTGTAGCCCCTTCTCCTGCCGACGCTTTTGATTTGCAAGACGGTGATGATGATCCAAAATCCGCTTCTGTCGCTACACATTCCGTTGCTCCTGCGTCCACCACTTCTATGTTTGTTTCCTCTTCCTCCCATGTATCTACCGCCCCTAAAACCAAAGAAGACGACGAGGAAGAAGAGGAAGAGAATGTTGAAGTTGAACTTGCAAAATTTCCCTCCAGCGGTGATCCGGATAAGATGGCAAAGATGCAAGCAATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTTCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTATGGATCTTAATATTTTCTCTTTTCGAAAGACCATAG

Protein sequence

MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATHSVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRVWILIFSLFERP*

Homology

[Close]

BLAST of CsaV3_3G003450 vs. NCBI nr
Match: KAE8650082.1 (hypothetical protein Csa_009880 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRVWILIFSLFERP 158
           QFTEEQMSRYESFRRAGFQKANMKRVWILIFSLFERP
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRVWILIFSLFERP 157

[Close]

BLAST of CsaV3_3G003450 vs. NCBI nr
Match: XP_004147964.1 (transcription initiation factor TFIID subunit 11 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 8.3e-68
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. NCBI nr
Match: XP_016900577.1 (PREDICTED: transcription initiation factor TFIID subunit 11 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAP PADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SV P STTSMFVSSSSHVS APKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVTPVSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. NCBI nr
Match: TYK19451.1 (transcription initiation factor TFIID subunit 11 [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAP PADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SV P STTSMFVSSSSHVS APKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVTPVSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. NCBI nr
Match: XP_038904707.1 (transcription initiation factor TFIID subunit 11 isoform X1 [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 9.2e-59
Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQD-GDDDPKSASVAT 60
           MKQSKDPFEAAFEEQEESPPNSPSA DDLEIPT VAP+ ADAFDLQD GDDD KSA+VAT
Sbjct: 30  MKQSKDPFEAAFEEQEESPPNSPSAVDDLEIPTNVAPATADAFDLQDAGDDDSKSAAVAT 89

Query: 61  HSVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDK-MAKMQAI 120
           HS APAS+TSMFVSSSS+VS APKTKEDD+EEEEENVEVELAKFPSSGDPDK MAKMQAI
Sbjct: 90  HSAAPASSTSMFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKNMAKMQAI 149

Query: 121 LSQFTEEQMSRYESFRRAGFQKANMKRV 147
           LSQFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 150 LSQFTEEQMSRYESFRRAGFQKANMKRL 177

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy Swiss-Prot
Match: Q9M565 (Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702 GN=TAF11 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 1   MKQSKDPFEAAF-EEQEESPPNSP---------SAADDLEIPTTVAPSPADAFDLQDGDD 60
           MK SKDPFEAA  EEQEESPP SP         S    +EI  T           QD D+
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQT-----------QDEDE 60

Query: 61  DPKSASVATHSVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPD 120
            P    V        + TS+ V+ + +     K K++D+EEEEEN++VEL K+P+S DP 
Sbjct: 61  RP----VDVRRPMKKAKTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPA 120

Query: 121 KMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRVWI 149
           KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK++ I
Sbjct: 121 KMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLI 138

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy Swiss-Prot
Match: F4HR03 (Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=3702 GN=TAF11B PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.0e-09
Identity = 56/147 (38.10%), Postives = 69/147 (46.94%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MK SKDPFEAA EEQEESP         +E   T+           +GD+          
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL-----------EGDE---------- 91

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMA-KMQAIL 120
                                 K K     E +   EVE  K  +  DP   A KMQ IL
Sbjct: 92  ------------------RAVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKMQKIL 130

Query: 121 SQFTEEQMSRYESFRRAGFQKANMKRV 147
           SQFTEEQMSRYESFRR+GF+K++M+++
Sbjct: 152 SQFTEEQMSRYESFRRSGFKKSDMEKL 130

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL
Match: A0A0A0L5S4 (TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL
Match: A0A5D3D798 (Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001040 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.4e-66
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAP PADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SV P STTSMFVSSSSHVS APKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVTPVSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL
Match: A0A1S4DX73 (transcription initiation factor TFIID subunit 11 OS=Cucumis melo OX=3656 GN=LOC103490961 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.4e-66
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAP PADAFDLQDGDDDPKSASVATH
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPADAFDLQDGDDDPKSASVATH 60

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120
           SV P STTSMFVSSSSHVS APKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS
Sbjct: 61  SVTPVSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILS 120

Query: 121 QFTEEQMSRYESFRRAGFQKANMKRV 147
           QFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 QFTEEQMSRYESFRRAGFQKANMKRL 146

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL
Match: A0A6J1KZI1 (transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111498496 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 127/150 (84.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTV-APSPADAFDLQDGDDDPK--SASV 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T V A + ADA DL DGDDDPK  +A+ 
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPKTAAAAA 60

Query: 61  ATHSVAP-ASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           AT+S  P ASTTS+FVSSSS++S APKTKEDD+EEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRV 147
           AILSQFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRL 150

[Close]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL
Match: A0A6J1FLN4 (transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111446328 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 128/149 (85.91%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPS-PADAFDLQDGDDDPKS-ASVA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T VA +  ADA DL DGDD+PKS A+ A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60

Query: 61  THSVAP-ASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+S  P ASTTS+FVSSSS+VS APKTKEDD+EEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRV 147
           ILSQFTEEQMSRYESFRRAGFQKANMKR+
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRL 149

[Close]

BLAST of CsaV3_3G003450 vs. TAIR 10
Match: AT4G20280.1 (TBP-associated factor 11 )

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-22
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 1   MKQSKDPFEAAF-EEQEESPPNSP---------SAADDLEIPTTVAPSPADAFDLQDGDD 60
           MK SKDPFEAA  EEQEESPP SP         S    +EI  T           QD D+
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQT-----------QDEDE 60

Query: 61  DPKSASVATHSVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPD 120
            P    V        + TS+ V+ + +     K K++D+EEEEEN++VEL K+P+S DP 
Sbjct: 61  RP----VDVRRPMKKAKTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPA 120

Query: 121 KMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRVWI 149
           KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK++ I
Sbjct: 121 KMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLI 138

[Close]

BLAST of CsaV3_3G003450 vs. TAIR 10
Match: AT1G20000.1 (TBP-associated factor 11B )

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-10
Identity = 56/147 (38.10%), Postives = 69/147 (46.94%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPKSASVATH 60
           MK SKDPFEAA EEQEESP         +E   T+           +GD+          
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL-----------EGDE---------- 91

Query: 61  SVAPASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMA-KMQAIL 120
                                 K K     E +   EVE  K  +  DP   A KMQ IL
Sbjct: 92  ------------------RAVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKMQKIL 130

Query: 121 SQFTEEQMSRYESFRRAGFQKANMKRV 147
           SQFTEEQMSRYESFRR+GF+K++M+++
Sbjct: 152 SQFTEEQMSRYESFRRSGFKKSDMEKL 130

The following BLAST results are available for this feature:

BLAST of CsaV3_3G003450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650082.1	2.4e-75	100.00	hypothetical protein Csa_009880 [Cucumis sativus]	[more]
XP_004147964.1	8.3e-68	99.32	transcription initiation factor TFIID subunit 11 [Cucumis sativus]	[more]
XP_016900577.1	1.3e-65	96.58	PREDICTED: transcription initiation factor TFIID subunit 11 [Cucumis melo]	[more]
TYK19451.1	1.3e-65	96.58	transcription initiation factor TFIID subunit 11 [Cucumis melo var. makuwa]	[more]
XP_038904707.1	9.2e-59	90.54	transcription initiation factor TFIID subunit 11 isoform X1 [Benincasa hispida]	[more]

BLAST of CsaV3_3G003450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M565	2.1e-21	48.10	Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702...	[more]
F4HR03	7.0e-09	38.10	Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CsaV3_3G003450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S4	4.0e-68	99.32	TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=...	[more]
A0A5D3D798	6.4e-66	96.58	Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DX73	6.4e-66	96.58	transcription initiation factor TFIID subunit 11 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KZI1	2.1e-53	84.67	transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FLN4	2.1e-53	85.91	transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CsaV3_3G003450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20280.1	1.5e-22	48.10	TBP-associated factor 11	[more]
AT1G20000.1	5.0e-10	38.10	TBP-associated factor 11B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 122..152 e-value: 6.1E-6 score: 28.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 122..147
IPR006809	TAFII28-like protein domain	PFAM	PF04719	TAFII28	coord: 118..146 e-value: 3.4E-8 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111
None	No IPR available	PANTHER	PTHR13218:SF19	TAFII28-LIKE PROTEIN-RELATED	coord: 1..146
IPR045127	Transcription initiation factor TFIID subunit 11-like	PANTHER	PTHR13218	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G003450.1	CsaV3_3G003450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity