CsaV3_3G003150 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G003150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S13
Location	chr3: 2656814 .. 2658449 (-)
RNA-Seq Expression	CsaV3_3G003150
Synteny	CsaV3_3G003150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCACAAGGTATAAACTTGGCAAATAACACACAACCATGAAACTATAAAAGAAGGCCCATCTTCTCAAAGTTAGGGTTTTTCGTGAGGGTCGTCGATTACGGTTGAGGCCATTGCCATTTTTCTGAAGCAGACATAGCTTTTGAATCTCCTCCATAGTCGTCTACAATGGGGCGTATGCACAGCAGAGGGTCGGTTCCTCTTCTTATCTTGTACCCATCTTCTTTTTCCTTTGATTCAATAACTCAATCCTTCCTCTCATTTTCCATTGCAGGAAAGGCATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTTAAGATTTCTACTCAAGATGTAAGCACCCTTTCACTTCAAATGTTTCAGCTGCCACTTACTTTGGTTGGAATGAATAGTTATGGAATGTTTTTTGTTTAGGTTGAGGAAAACATCTGCAAATTTGCAAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTCATTCTTCGTGATTCTCACGGTATTGCTCAGGTTAAGAGTGTTACAGGCAATAAGATCCTGCGCATTCTTAAAGCTCAGGGTAATGCATTTGTTCTTCTTGTTTATCAATTCGAAATTTTATGTTAATACACGGAGGATAATTTTTGGAATAGATATGGAAGATTGAGTATATGTTAGTGTATTAGTTTGAGGTTTTAGCTGTTGTGGTAATTGAATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTGTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCTAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAGTAAGTGGTCACTGACTTGATTCTCTGTATTTTATTTTGATATCTAATATCTATATTATAACTTTAAGAATGGCGATTGCTTTAAGCTTGTTGTTACTCATTAGTAGGGTGGATTTAAATTTTCCCTACTTATCCAAAGTATTGTATTGCTTAGTGAATCGCATTAAAGAAATAGTACTTTTCACTACATGTGAGGATCTGTTATATAGGTTGGATAATGCGTCCTTGAGTTCTAAGAAATGTTACTTGAAGTTTAGTTCGTTCATATTCAGTAACTTACAACTATCATCCTCCCTCCCCAGTGATTGATTGGTTGCTTTTTTTGTCTTCTTGTTTCAGCGAGTCAACTACTGCTAGCACACTTGTTGCTTGATTTTGTCAACTGCTGCATTTATGGGCGATTAAGATCCTTTTCATTTAGAGATTCGATGTAAGGTATTTCCATTGTGTGGTTCATTAGACATTAAATTGTTCCAAGGTATCACAGAAACATAGTGCTCAATTTTTGTCATTCTCATCATGATTTTGTAGTTTCTTCCTTGTCTAAATTGGACATGATAGTATTTTTGTCTCTAATTATAATTGATATTCCTCTGAACTCAATATTGAAAATGTGGTTTCTGAAGCATTTTGCACCATGCATAAGTATGCTACTTGGCGTACTTAAATTTCCAAACTTAGTGGGATTTTTTTTTATTGATATTCCTCTGAACTCAAT

mRNA sequence

ATGGGGCGTATGCACAGCAGAGGGAAAGGCATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTTAAGATTTCTACTCAAGATGTTGAGGAAAACATCTGCAAATTTGCAAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTCATTCTTCGTGATTCTCACGGTATTGCTCAGGTTAAGAGTGTTACAGGCAATAAGATCCTGCGCATTCTTAAAGCTCAGGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTGTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCTAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAGTCAACTACTGCTAGCACACTTGTTGCTTGA

Coding sequence (CDS)

ATGGGGCGTATGCACAGCAGAGGGAAAGGCATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTTAAGATTTCTACTCAAGATGTTGAGGAAAACATCTGCAAATTTGCAAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTCATTCTTCGTGATTCTCACGGTATTGCTCAGGTTAAGAGTGTTACAGGCAATAAGATCCTGCGCATTCTTAAAGCTCAGGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTGTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCTAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAGTCAACTACTGCTAGCACACTTGTTGCTTGA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*

Homology

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BLAST of CsaV3_3G003150 vs. NCBI nr
Match: XP_004147941.1 (40S ribosomal protein S13 [Cucumis sativus] >KGN55912.1 hypothetical protein Csa_010422 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 3.8e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of CsaV3_3G003150 vs. NCBI nr
Match: XP_008448906.1 (PREDICTED: 40S ribosomal protein S13 [Cucumis melo] >XP_022923442.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022965207.1 40S ribosomal protein S13-like [Cucurbita maxima] >KAG6577599.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015648.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >TYK19479.1 40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of CsaV3_3G003150 vs. NCBI nr
Match: XP_038876810.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 3.2e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP+WLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPTWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. NCBI nr
Match: XP_028805045.1 (40S ribosomal protein S13 [Prosopis alba] >KAF7826011.1 40S ribosomal protein S13 [Senna tora] >KAF7844799.1 40S ribosomal protein S13 [Senna tora])

HSP 1 Score: 298.1 bits (762), Expect = 4.2e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of CsaV3_3G003150 vs. NCBI nr
Match: XP_007212197.1 (40S ribosomal protein S13 [Prunus persica] >XP_008227708.1 PREDICTED: 40S ribosomal protein S13 [Prunus mume] >XP_008232649.1 PREDICTED: 40S ribosomal protein S13 [Prunus mume] >XP_008372699.1 40S ribosomal protein S13 [Malus domestica] >XP_009338104.1 PREDICTED: 40S ribosomal protein S13 [Pyrus x bretschneideri] >XP_016648829.1 PREDICTED: 40S ribosomal protein S13 [Prunus mume] >XP_021804993.1 40S ribosomal protein S13 [Prunus avium] >XP_021813482.1 40S ribosomal protein S13 [Prunus avium] >XP_021813483.1 40S ribosomal protein S13 [Prunus avium] >XP_028955924.1 40S ribosomal protein S13 [Malus domestica] >XP_034205990.1 40S ribosomal protein S13 [Prunus dulcis] >XP_034213687.1 40S ribosomal protein S13 [Prunus dulcis] >KAB2595456.1 hypothetical protein D8674_030906 [Pyrus ussuriensis x Pyrus communis] >PQM35586.1 40S ribosomal protein S13 [Prunus yedoensis var. nudiflora] >TQD84804.1 hypothetical protein C1H46_029652 [Malus baccata] >CAB4269738.1 unnamed protein product [Prunus armeniaca] >KAB2595477.1 hypothetical protein D8674_030927 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-78
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKIS+QDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTG+KILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK ++QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-75
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKIS+QDV+E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.5e-69
Identity = 131/151 (86.75%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +  DVEE I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTG+KILRILKA GLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL
Match: A0A0A0L5N6 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G035890 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL
Match: A0A6J1HJQ7 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111465133 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL
Match: A0A5D3D7D6 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001340 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL
Match: A0A6J1E645 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111431137 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL
Match: A0A1S3BLF5 (40S ribosomal protein S13 OS=Cucumis melo OX=3656 GN=LOC103490930 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKA GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-76
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK ++QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CsaV3_3G003150 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 281.6 bits (719), Expect = 3.8e-76
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKA GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of CsaV3_3G003150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147941.1	3.8e-78	100.00	40S ribosomal protein S13 [Cucumis sativus] >KGN55912.1 hypothetical protein Csa...	[more]
XP_008448906.1	1.5e-77	99.34	PREDICTED: 40S ribosomal protein S13 [Cucumis melo] >XP_022923442.1 40S ribosoma...	[more]
XP_038876810.1	3.2e-77	98.68	40S ribosomal protein S13-like [Benincasa hispida]	[more]
XP_028805045.1	4.2e-77	98.68	40S ribosomal protein S13 [Prosopis alba] >KAF7826011.1 40S ribosomal protein S1...	[more]
XP_007212197.1	5.5e-77	98.68	40S ribosomal protein S13 [Prunus persica] >XP_008227708.1 PREDICTED: 40S riboso...	[more]

BLAST of CsaV3_3G003150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.8e-78	96.69	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	3.2e-75	92.72	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P59223	5.4e-75	92.72	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P46298	5.4e-75	92.72	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
Q69UI1	7.5e-69	86.75	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of CsaV3_3G003150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5N6	1.9e-78	100.00	Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G03...	[more]
A0A6J1HJQ7	7.1e-78	99.34	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111465133 PE=3 ...	[more]
A0A5D3D7D6	7.1e-78	99.34	40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1E645	7.1e-78	99.34	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111431137 PE=...	[more]
A0A1S3BLF5	7.1e-78	99.34	40S ribosomal protein S13 OS=Cucumis melo OX=3656 GN=LOC103490930 PE=3 SV=1	[more]

BLAST of CsaV3_3G003150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	2.2e-76	92.72	ribosomal protein S13A	[more]
AT3G60770.1	3.8e-76	92.72	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 1.1E-39 score: 147.8
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 1.7E-31 score: 108.0
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 4.7E-14 score: 62.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 75..145 e-value: 9.2E-15 score: 54.6
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..143 e-value: 3.99834E-26 score: 92.181
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 3.4E-29 score: 102.3
None	No IPR available	GENE3D	1.10.287.10		coord: 83..151 e-value: 8.8E-41 score: 140.1
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..151
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..151
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 32.085884
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G003150.1	CsaV3_3G003150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome