CsaV3_3G002690 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G002690
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 2157418 .. 2157806 (-)
RNA-Seq Expression	CsaV3_3G002690
Synteny	CsaV3_3G002690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGGCAAAGTTCAATGATCCTCAATTTCTTATCATAGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGATGCACGTTCCTGTACCATACTTACGATGCAATGCCGAAAGCTCCATAGCCATGCGAATCAACGCCTCAATCTCAATCTCTTGTAG

mRNA sequence

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGA

Coding sequence (CDS)

ATGGCATCATTCCCAATTTCATCCCCAATAGCTATTAACCATTCCGAAAACAGAACTTCATCACTTACCTCGAGTCCAAGAAGCTCCGTTCCCCGACCCGAACTCTCCAGAATCAATACGCCTAACCTAATTTCAACTATCACTTCCCTCTCCGAACAACAACGTTCTACCGAGTTCAGACCTTCTCGCCGCACCAACGCCCGAAGCACATGGTTGCGCCGCCGTAGCTCCGCCGCTCGTCGAATTAGGTCATGGAACTCTAGCTCGTGA

Protein sequence

MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFRPSRRTNARSTWLRRRSSAARRIRSWNSSS*

Homology

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BLAST of CsaV3_3G002690 vs. NCBI nr
Match: KAE8650057.1 (hypothetical protein Csa_023702 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR 60
          MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR
Sbjct: 1  MASFPISSPIAINHSENRTSSLTSSPRSSVPRPELSRINTPNLISTITSLSEQQRSTEFR 60

Query: 61 PSRRTNARSTWLRRRSSAARRIRSWNSSS 90
          PSRRTNARSTWLRRRSSAARRIRSWNSSS
Sbjct: 61 PSRRTNARSTWLRRRSSAARRIRSWNSSS 89

The following BLAST results are available for this feature:

BLAST of CsaV3_3G002690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650057.1	3.7e-36	100.00	hypothetical protein Csa_023702 [Cucumis sativus]	[more]

BLAST of CsaV3_3G002690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G002690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G002690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G002690.1	CsaV3_3G002690.1	mRNA