CsaV3_3G000860 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G000860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 673872 .. 674072 (+)
RNA-Seq Expression	CsaV3_3G000860
Synteny	CsaV3_3G000860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGCAAGGAGGAATATGACAAAGACAGTGAGGGAGAGGAAGAAGATGGTTATTTGAGGAAGACACGGGAGATAAGAGGAAGAAAAAGGAAAGCACGTGGAGAGTGGTTATTTGGGAAAGAATATGAAAATAAGAGGAAGAAAAATGTGAATTCACGTGGGCAAATGGAAAAGGAAAAGGAAATAGAAGAAAAATGA

mRNA sequence

ATGAGAGGCAAGGAGGAATATGACAAAGACAGTGAGGGAGAGGAAGAAGATGGTTATTTGAGGAAGACACGGGAGATAAGAGGAAGAAAAAGGAAAGCACGTGGAGAGTGGTTATTTGGGAAAGAATATGAAAATAAGAGGAAGAAAAATGTGAATTCACGTGGGCAAATGGAAAAGGAAAAGGAAATAGAAGAAAAATGA

Coding sequence (CDS)

ATGAGAGGCAAGGAGGAATATGACAAAGACAGTGAGGGAGAGGAAGAAGATGGTTATTTGAGGAAGACACGGGAGATAAGAGGAAGAAAAAGGAAAGCACGTGGAGAGTGGTTATTTGGGAAAGAATATGAAAATAAGAGGAAGAAAAATGTGAATTCACGTGGGCAAATGGAAAAGGAAAAGGAAATAGAAGAAAAATGA

Protein sequence

MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKEKEIEEK*

Homology

[Close]

BLAST of CsaV3_3G000860 vs. NCBI nr
Match: KGN55668.1 (hypothetical protein Csa_010393 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.3e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE 60
          MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE
Sbjct: 1  MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE 60

Query: 61 KEIEEK 67
          KEIEEK
Sbjct: 61 KEIEEK 66

[Close]

BLAST of CsaV3_3G000860 vs. ExPASy TrEMBL
Match: A0A0A0L1N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002870 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE 60
          MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE
Sbjct: 1  MRGKEEYDKDSEGEEEDGYLRKTREIRGRKRKARGEWLFGKEYENKRKKNVNSRGQMEKE 60

Query: 61 KEIEEK 67
          KEIEEK
Sbjct: 61 KEIEEK 66

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55668.1	6.3e-25	100.00	hypothetical protein Csa_010393 [Cucumis sativus]	[more]

BLAST of CsaV3_3G000860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G000860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N2	3.1e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002870 PE=4 SV=1	[more]

BLAST of CsaV3_3G000860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000860.1	CsaV3_3G000860.1	mRNA