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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTATGAGTATGAGTACAAGTTGTGGTAGTGGAAGGTCTAGGGTTTTTGAAGGAGAAGATGAAGAAGAAGAAGATGGTGAATATTATTTGATATTGAGAAGATGAAGAAGATGAAGATGAAGAAGAAGAAGGGGAAGAGGAAGAGGAAGGGGGAAAGGGAGGAGTTATTGCAGATCGTATTGAGAGGGTGCAATTGCATTAA mRNA sequence ATGAGTATGAGTATGAGTACAAGTTGTGGTAGTGGAAGGTCTAGGGTTTTTGAAGGAGAAGATGAAGAAGAAGAAGAAGATGAAGAAGATGAAGATGAAGAAGAAGAAGGGGAAGAGGAAGAGGAAGGGGGAAAGGGAGGAGTTATTGCAGATCGTATTGAGAGGGTGCAATTGCATTAA Coding sequence (CDS) ATGAGTATGAGTATGAGTACAAGTTGTGGTAGTGGAAGGTCTAGGGTTTTTGAAGGAGAAGATGAAGAAGAAGAAGAAGATGAAGAAGATGAAGATGAAGAAGAAGAAGGGGAAGAGGAAGAGGAAGGGGGAAAGGGAGGAGTTATTGCAGATCGTATTGAGAGGGTGCAATTGCATTAA Protein sequence MSMSMSTSCGSGRSRVFEGEDEEEEEDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH*
Homology
BLAST of CsaV3_2G035080 vs. NCBI nr
Match: KAE8652297.1 (hypothetical protein Csa_022466 [Cucumis sativus]) HSP 1 Score: 99.8 bits (247), Expect = 8.7e-18 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
Query: 1 MSMSMSTSCGSGRSRVFEGEDEEEEEDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH 60
MSMSMSTSCGSGRSRVFEGEDEEEEEDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH
Sbjct: 1 MSMSMSTSCGSGRSRVFEGEDEEEEEDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH 59
BLAST of CsaV3_2G035080 vs. ExPASy TrEMBL
Match: A0A0A0LN72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G419970 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 9.4e-18 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0
Query: 1 MSMSMSTSCGSGRSRVFEGEDEEEEEDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH 60
MSMSMSTSCGSGRSRVFEGEDEEEE+DEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH
Sbjct: 1 MSMSMSTSCGSGRSRVFEGEDEEEEDDEEDEDEEEEGEEEEEGGKGGVIADRIERVQLH 59
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8652297.1 | 8.7e-18 | 100.00 | hypothetical protein Csa_022466 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LN72 | 9.4e-18 | 98.31 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G419970 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 20..42 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..42 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..59 |
Relationships
The following mRNA feature(s) are a part of this gene:
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