CsaV3_2G034750 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr2: 23136738 .. 23137844 (+)
RNA-Seq Expression	CsaV3_2G034750
Synteny	CsaV3_2G034750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCTTTTATAGAAATGTCCAGAAAAGAAAGAAAAGTCCTAAATATTTCTATAGGGCTAAAGCAAAAGTTACAGAAGATGCAAAAGACAAATTTGGAAAGTAGCAAAAGACAGAACAACAGGAGAAACAACATGAAGGGATAAACTTAACGATGGATACTGGAAACATCTCTCCTCTTACGAATGAAATGGAGATTGATTTCATCTCAAGCCCCGACTCTATTATGGAAACTCCAATTCAACATTCTCCTTCACAATCTGATATAATCAAGGACAGTGTAACACTACTTGTCAACAAAGGGGAGGAAGGATGAGATTGAAGAGAAATGGCTGGGAAAGAATGATTTCAATGACGAAGAATTTCAGAAGAAACTTATCACTTGGCTTAAAGTCAATAATCTGGCAGTGACCCCAAACATTGACAATCTTACAAGCCTTCCAAGCTCATCAAATGCAAAAACTTTCAAAGAAAAAAAGGATGACAATGTCATAGGGTTCATTGAGGACAAATAGTTCCCCATGAAAATCTTAGCTTGGAATGTAAGAGGGATTGGTTCTACCCAAAAAAGAGTCCAAATAAAACATGTTATTTCTGATTATGCTCCTGATTTTGTTTGCCTATCTGAAACTAAATTGTTGAATGTAAACAACAAACTGGTTAAATCTATCTGGAGCTCTATTAGCATCAAATACATTTTTAAACAAGTTAGTGGGAGATCGGGTGGCATTCTGTTAATGTGGGATGATTTGAAGCACCAACTTATCAACTATGTTATTGGGGAGTTCACCATTTCAACAAATTTTGTTGAAGCAGATGGTTATAATTGGTGGATCACATCAGTATATGACCTTGTAAATAGAAGCAGAAGGAAATCATTTTGGCAAGAGCTGATGAATCTCGCTCAAACATGTGGATCAAATTGGTTGTTAGCAGGGGACTTCAATGCTATCAGATGGAATATTGAAACTTCATCAAATAATCCTTTCAAATACAGCATGACAAAGTTCAACTATCTCATTCTCAACCTTGGTTTGGTTGATCCTCCTTTGACAAATGGTTCTTATACATGGTCCAACCTTAGGGACCCCCTGTGCTCTCTAGACTAG

mRNA sequence

ATGAAAATCTTAGCTTGGAATGTAAGAGGGATTGGTTCTACCCAAAAAAGAGTCCAAATAAAACATGTTATTTCTGATTATGCTCCTGATTTTGTTTGCCTATCTGAAACTAAATTGTTGAATGTAAACAACAAACTGGTTAAATCTATCTGGAGCTCTATTAGCATCAAATACATTTTTAAACAAGTTAGTGGGAGATCGGGTGGCATTCTGTTAATGTGGGATGATTTGAAGCACCAACTTATCAACTATGTTATTGGGGAGTTCACCATTTCAACAAATTTTGTTGAAGCAGATGGTTATAATTGGTGGATCACATCAGTATATGACCTTGTAAATAGAAGCAGAAGGAAATCATTTTGGCAAGAGCTGATGAATCTCGCTCAAACATGTGGATCAAATTGGTTGTTAGCAGGGGACTTCAATGCTATCAGATGGAATATTGAAACTTCATCAAATAATCCTTTCAAATACAGCATGACAAAGTTCAACTATCTCATTCTCAACCTTGGTTTGGTTGATCCTCCTTTGACAAATGGTTCTTATACATGGTCCAACCTTAGGGACCCCCTGTGCTCTCTAGACTAG

Coding sequence (CDS)

ATGAAAATCTTAGCTTGGAATGTAAGAGGGATTGGTTCTACCCAAAAAAGAGTCCAAATAAAACATGTTATTTCTGATTATGCTCCTGATTTTGTTTGCCTATCTGAAACTAAATTGTTGAATGTAAACAACAAACTGGTTAAATCTATCTGGAGCTCTATTAGCATCAAATACATTTTTAAACAAGTTAGTGGGAGATCGGGTGGCATTCTGTTAATGTGGGATGATTTGAAGCACCAACTTATCAACTATGTTATTGGGGAGTTCACCATTTCAACAAATTTTGTTGAAGCAGATGGTTATAATTGGTGGATCACATCAGTATATGACCTTGTAAATAGAAGCAGAAGGAAATCATTTTGGCAAGAGCTGATGAATCTCGCTCAAACATGTGGATCAAATTGGTTGTTAGCAGGGGACTTCAATGCTATCAGATGGAATATTGAAACTTCATCAAATAATCCTTTCAAATACAGCATGACAAAGTTCAACTATCTCATTCTCAACCTTGGTTTGGTTGATCCTCCTTTGACAAATGGTTCTTATACATGGTCCAACCTTAGGGACCCCCTGTGCTCTCTAGACTAG

Protein sequence

MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIFKQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSFWQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNGSYTWSNLRDPLCSLD*

Homology

[Close]

BLAST of CsaV3_2G034750 vs. NCBI nr
Match: XP_011650214.1 (uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetical protein Csa_022537 [Cucumis sativus])

HSP 1 Score: 411.8 bits (1057), Expect = 3.4e-111
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF
Sbjct: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
           KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF
Sbjct: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG
Sbjct: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180

Query: 181 SYTWSNLRDPLCSLD 196
           SYTWSNLRDPLCSLD
Sbjct: 181 SYTWSNLRDPLCSLD 195

[Close]

BLAST of CsaV3_2G034750 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 3.6e-52
Identity = 100/188 (53.19%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           M ILAWNVRG+GS  KR  IK  I+   PD V LSETK  ++NNK +KS+WSSISI +  
Sbjct: 1   MNILAWNVRGLGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWAS 60

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
              SG SGGI+L+WD L    +  + G F+IS +F  AD + WW+T VY  V + +RK F
Sbjct: 61  LDASGASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLF 120

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           WQEL +L   CG  WLL  DFN  RW+ ETSS NP +  M KFN+ I   GL+DP + NG
Sbjct: 121 WQELFDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNG 180

Query: 181 SYTWSNLR 189
            YTWSNLR
Sbjct: 181 QYTWSNLR 188

[Close]

BLAST of CsaV3_2G034750 vs. NCBI nr
Match: TYK11012.1 (uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 9.1e-40
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK+L WN RG+GS  KR  IK+ I  Y+PDFV L+ET L   N +++KS W S SI +I 
Sbjct: 472 MKLLTWNARGLGSPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIV 531

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
           K  SG SGGIL++WD   H L++     F++S NF   +  +WW+T +Y    R +R  F
Sbjct: 532 KNASGSSGGILILWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHF 591

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W +L NL       W L  D N IR   ET+S     +S    N  I N  L+DPPLTN 
Sbjct: 592 WADLHNLQHLNSFPWSLERDLNVIRMREETTSILSSSHSSRMLNNFISNNLLIDPPLTNN 651

Query: 181 SYTWSNLRDP 191
            +TWSNLR+P
Sbjct: 652 RFTWSNLRNP 661

[Close]

BLAST of CsaV3_2G034750 vs. NCBI nr
Match: KAA0058980.1 (uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 9.1e-40
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK+L WN RG+GS  KR  IK+ I  Y+PDFV L+ET L   N +++KS W S SI +I 
Sbjct: 472 MKLLTWNARGLGSPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIV 531

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
           K  SG SGGIL++WD   H L++     F++S NF   +  +WW+T +Y    R +R  F
Sbjct: 532 KNASGSSGGILILWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHF 591

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W +L NL       W L  D N IR   ET+S     +S    N  I N  L+DPPLTN 
Sbjct: 592 WADLHNLQHLNSFPWSLERDLNVIRMREETTSILSSSHSSRMLNNFISNNLLIDPPLTNN 651

Query: 181 SYTWSNLRDP 191
            +TWSNLR+P
Sbjct: 652 RFTWSNLRNP 661

[Close]

BLAST of CsaV3_2G034750 vs. NCBI nr
Match: TYJ97060.1 (hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-39
Identity = 80/188 (42.55%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK L WN RG+GS  KR QIK++IS Y  D V ++ETKL   ++  ++SIW+   +K+  
Sbjct: 1   MKSLCWNTRGLGSPSKRAQIKNLISSYDTDLVIVTETKLHISSSFNLRSIWNKAGVKFPS 60

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
              +G SGGIL++ +D+  ++ +Y     ++S N +  DG +WWI+S+Y   +   R +F
Sbjct: 61  LNSNGYSGGILILRNDINFKVASYKEENHSLSVNILNLDGTSWWISSIYGPSSNKDRVNF 120

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W EL  L      NW+LA DFN +RW +ET++    K +M  FN  I   GL+DPPL+N 
Sbjct: 121 WDELKQLQSLSLPNWMLASDFNIVRWRLETNAKKLDKRNMESFNDFIQVNGLIDPPLSNN 180

Query: 181 SYTWSNLR 189
           +YTWSNLR
Sbjct: 181 AYTWSNLR 188

[Close]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.7e-52
Identity = 100/188 (53.19%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           M ILAWNVRG+GS  KR  IK  I+   PD V LSETK  ++NNK +KS+WSSISI +  
Sbjct: 1   MNILAWNVRGLGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWAS 60

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
              SG SGGI+L+WD L    +  + G F+IS +F  AD + WW+T VY  V + +RK F
Sbjct: 61  LDASGASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLF 120

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           WQEL +L   CG  WLL  DFN  RW+ ETSS NP +  M KFN+ I   GL+DP + NG
Sbjct: 121 WQELFDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNG 180

Query: 181 SYTWSNLR 189
            YTWSNLR
Sbjct: 181 QYTWSNLR 188

[Close]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL
Match: A0A5A7UV84 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001710 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 4.4e-40
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK+L WN RG+GS  KR  IK+ I  Y+PDFV L+ET L   N +++KS W S SI +I 
Sbjct: 472 MKLLTWNARGLGSPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIV 531

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
           K  SG SGGIL++WD   H L++     F++S NF   +  +WW+T +Y    R +R  F
Sbjct: 532 KNASGSSGGILILWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHF 591

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W +L NL       W L  D N IR   ET+S     +S    N  I N  L+DPPLTN 
Sbjct: 592 WADLHNLQHLNSFPWSLERDLNVIRMREETTSILSSSHSSRMLNNFISNNLLIDPPLTNN 651

Query: 181 SYTWSNLRDP 191
            +TWSNLR+P
Sbjct: 652 RFTWSNLRNP 661

[Close]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL
Match: A0A5D3CI86 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00540 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 4.4e-40
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK+L WN RG+GS  KR  IK+ I  Y+PDFV L+ET L   N +++KS W S SI +I 
Sbjct: 472 MKLLTWNARGLGSPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIV 531

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
           K  SG SGGIL++WD   H L++     F++S NF   +  +WW+T +Y    R +R  F
Sbjct: 532 KNASGSSGGILILWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHF 591

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W +L NL       W L  D N IR   ET+S     +S    N  I N  L+DPPLTN 
Sbjct: 592 WADLHNLQHLNSFPWSLERDLNVIRMREETTSILSSSHSSRMLNNFISNNLLIDPPLTNN 651

Query: 181 SYTWSNLRDP 191
            +TWSNLR+P
Sbjct: 652 RFTWSNLRNP 661

[Close]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL
Match: A0A5D3BB44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001280 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 80/188 (42.55%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MK L WN RG+GS  KR QIK++IS Y  D V ++ETKL   ++  ++SIW+   +K+  
Sbjct: 1   MKSLCWNTRGLGSPSKRAQIKNLISSYDTDLVIVTETKLHISSSFNLRSIWNKAGVKFPS 60

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
              +G SGGIL++ +D+  ++ +Y     ++S N +  DG +WWI+S+Y   +   R +F
Sbjct: 61  LNSNGYSGGILILRNDINFKVASYKEENHSLSVNILNLDGTSWWISSIYGPSSNKDRVNF 120

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W EL  L      NW+LA DFN +RW +ET++    K +M  FN  I   GL+DPPL+N 
Sbjct: 121 WDELKQLQSLSLPNWMLASDFNIVRWRLETNAKKLDKRNMESFNDFIQVNGLIDPPLSNN 180

Query: 181 SYTWSNLR 189
           +YTWSNLR
Sbjct: 181 AYTWSNLR 188

[Close]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL
Match: A0A5E4F090 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035017 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 77/189 (40.74%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60
           MKI++WN+RG+GS +KR+ +K  +    PD V L ETK   V+ +LV  +W S   +++F
Sbjct: 8   MKIISWNIRGLGSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVF 67

Query: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120
               GRSGGI ++W+     +I+ ++G+F++S   VE  G +WW++ +Y    +  R SF
Sbjct: 68  SPSLGRSGGIAVLWNSQSVSVIDSMVGDFSVSIRIVENIGTDWWLSGIYGPCRQRERISF 127

Query: 121 WQELMNLAQTCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNG 180
           W+EL +L   CG  W L GDFN +R++ E S+      SM  FN  I    L DP L N 
Sbjct: 128 WEELADLYGYCGDKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPNLLNA 187

Query: 181 SYTWSNLRD 190
           S+TWSNLR+
Sbjct: 188 SFTWSNLRE 196

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650214.1	3.4e-111	100.00	uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetica...	[more]
XP_022145142.1	3.6e-52	53.19	uncharacterized protein LOC111014657 [Momordica charantia]	[more]
TYK11012.1	9.1e-40	44.74	uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]	[more]
KAA0058980.1	9.1e-40	44.74	uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]	[more]
TYJ97060.1	4.5e-39	42.55	hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_2G034750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVN2	1.7e-52	53.19	uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5A7UV84	4.4e-40	44.74	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CI86	4.4e-40	44.74	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BB44	2.2e-39	42.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5E4F090	3.2e-38	40.74	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]

BLAST of CsaV3_2G034750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..193 e-value: 4.9E-29 score: 103.7
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..192
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 5..144 e-value: 1.3E-6 score: 28.2
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..164
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034750.1	CsaV3_2G034750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004518	nuclease activity