CsaV3_2G034620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L30
Location	chr2: 23008327 .. 23013839 (-)
RNA-Seq Expression	CsaV3_2G034620
Synteny	CsaV3_2G034620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGTATTAAAGAACCCTAGAATCTTTTCCCTCTCTTCGCAGCAGCCGCGTCCCTCTCGCTTCTAACTTCTCCATTCTGTTGTGTGTGTCCTCATTTCTCACTGATTCGCCAGCCCGCAGCTATCCTCCCTTCCCCGATTCACCGTCAATCCATCACAGCTACGCCACCATTCCAGCTTCAAAGTAGCCGCACCTTCTCTACATTTCCCCTTATGTCCTGAAATCCTCACAGTCTATCACCGGCTCACGGTCACTCCAAGATTCGGCAATCTCGTTTACCAGTTCCACACGACCACGATTCCAGTTCCGGCTCCTTAAAGGTGAATTAATTTAAAGTTTTTCTTTCATTGAAACTTGAAAGAGTTAAACCCTCCGTCCCTCTCCTTTTACACTTAATTTAATTTAAAATTTCTACATAGAGCTCTCTAGACTATTTGAATAAATGATTTTGCTGCATTTTCAATCGATGTTTTTGTGACTAATGCTGCCTTTTGAATGGTATTAGAGCTCTCTTTAAGGTTTTTGACTTTTGGATAGATGATTTTATGACTAATGAATTTTGTATTGATTAGGATACAATTTGAGGTTGTCATTGGATTTTGTTATTTGAAATTGTATTGGAAATACTTCATTTAACGAATTTGAAAATAAGGAATTGTTGAAAATAAATATTTGGTTGAAATTAAATGAAATTTGGTTAAAAAACTGAGATTGAATTTTCCGGCGGGGAACCTTATCCCGCCATGGTTGTCCTTACCCAATCCGGGATGGAATTAGAATAGGGGGACGAGGAAGGGTTCTCCGCCCCACTCAGCCCTTCACCGTAGACATCCCTGTCCCTACTCACTGCCTCTGTTTCAGTCTCTCTCGATGTTTCACTCTTCTCTCTCTCAGATTGATGCTTGAGCCTCAACATCATCATCTACCTGTCACTTCCCTTTATTTCTCTCCTTTCTCCTCCACGAACTGATAAGTTTGGAGTCTTCATTATCTTGTTCTATGCTCTCTGCCCTTCTGATCTACTGTTCTGTTTTTTTCCCTGAAATCTACTTTTCTGGGGTGTTTAATTTTCATTTGGTATTTGGACAAATTAATGGATAAATTATAAAAAATGGCCCTCGACTTTGCATTTTGTGACAAAAATTCTCAACTTTCAAAAGTATAAAAAATACACCCAGACTTTGAAAAAAGGTTAAGAAATGCCCTTAACGTTAATTTTTGTTGGAAACTCTTAAAATTTTGTTCAAAAGATACCCTTAAAAAACATTAAAAACTATACTCAGAATTAATATATGAAATAAAATTGTTAATATCTTGTTGAAAAATAACTTAAAATTAAACATGTTGTCAGTATATTGATACATTTGTTTGAAGTTGTTAGGTTTTATGAAATTGCCAATATTTATTTATGGCTTCAGATATTGGAAATGTTATTGCATTGCCCTTGTTTTGAGAAGGGGATGGTCTACAGAAATGGTGATTCTGCAAGATACTTTCCTTATTGGTGGTTGCCTTTTCTTTTTCTACTGCCTACATCTTTCTTATTTAATGCACAGTTGCTATGGAAATTGCTTACTATGATTCTGCTATGCATATTTGAAGGACACTTAGTCCTCCATTTAAGGTTGATGATTCGGTTTGTTTTAAAAGCAACATTTGTATTATTTTGTTGTAGCTCTTTCTTCTTGTGTTAAAAGAAGGGAACATTACATGTATTGGAGACATATCCCATTCTTCTCACTATTTTGCGTCATGATTCATCGAGAAAGGATTCTCTAAGCTTAGAGGGAGCCTAGGTCATTCGAACAAAGAGGATTTTGTTCAATGAAAAGATATAACACTGTGAGAGGGAATCTTACAAACTTGGGGGGAGCTCATGTTCTTTAGAGAGGGAGTCTATCTTTGGGAGAGCCTTAGACCATCTCACGAAAGAGTAGATAATAAATGAAGAAATTTGGAGGTAGAGGTAGTGTCTAGAGGCTAAATTAAAAAATAGAAACTCAAAAACATGACAATGTTTAGTAAAATTAAATTTGGTATCTTTTAATGGGTGGCTGCAAAATGGATGTTTGCCACTCAAATGCCTTTTCTCCTTTTTTTTTACAAGTGTTTTGTTTTTGAATACTACATTGTTCTTGAACTTGGATATAATACTGTTGGCCAAACTACTGAAGGTCCTTTACCGAACAAAAATGAGTTTGTAAAATTAGTTTCTCATTCAATTAATGTTAGATATAAAACTAACAAAGAGTTTGATATGTGAACCTCAGTTAATTGAAATTAGGAACCCTTTAGGTATGTGAAATCATTCGATTTTAAACACTAAAACCCTTAAATCGAATGTATTTCATCACTAAGGATTTAATTAGACACGGGTTCCATTAATAACAAGGCATCAAGCCCTTGAGACAAAAAATAAGTTCTTTGGCCCAAGATTTGTACACTCCACAAGATAAGATGTTCAATCCTACTAATGTTCTTGCTTCCTGGCATATGCTTTCATCTTAATGTTTTGTTTTAAGACCAAATGCTGTGTATACAAAAGTCTCATTTAAATTTCAGACTCTATGTTGATGAAAGTGATACAGCTGAATGGTATATTGAAACATTTTTTATTCCAAGCATGCAGTTCTACTTGTTTACTTTTTAGAACATTGTTTTTAGAGGACTTTATTGAAAATTTGAAGCTGATATAAAGATGAAGAGTATTGATTTGAGATGCAAATCATGGCATGGACGTGATTTCTACTTAAAATTATCATCTATATTCTTTCATTCCTTTGATGTGCAAGTAGAGCATTTTTGGAGCTTTCTATCTACTGAAGATGATGAATGATCATTTGTTTATTTGAAATTTGGAGACTGCCGGGGTTTTCCTGCCCAACCAATTAAAAGTAAACTACAGAAGTTCCTTGGAGACAGCTTGGCATGGATGCATACACTTTTATGTCATTCATTTCTATATTTAGAAAACAAATTTGAAGACTTTGTTCTAATGCTTAGATGAGACTGTTTATGTGTCTGCAGAGGAAATTGTTTCTTAATCTTTATTTATTTTTGTAGATTTTGCAGATCTTGGATATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTTGCTATATATACTTGTTCTCTGCTGCGCACATGCACACACTACAGAACTGCCTCATGGACTGAAGTTTTTATTTTTTTGGTTGATTATAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGAAACATGTATTGCTGTTAGAGGTACTTCTTGAGTATCAGGACGATGTTGAAAAGAATTATATTTGAGTAGTGTATTTTTCAGGAATTACTTGACAATCAATGGCTTTTATGCTCCATTCATCTTGCCAAATTTAGTTGCTAGCTAAAATAATATATTGGAATATTTGCCATTTTGATAATGAAATGTCTACCAAAATTATTTTGATGAAGCTACTTTCAGTAAGAAACTAATTACGAAACACGGCTGTTTGCATAAATGCTATGCACGCCCTTTTGCACTTAAGAACATTATTTGTAATATGCTTAATGCTTTAGATCATATAAGCCTAGGGGAAATCAAAATGGCAGTGGCTCATCTGCTCATTAATGCTAAAACCACAAGATGGTTGTCTTGTAGATACAGGCTTTGAGATATTCAAACGTACATGCAGGATTTTAAACTTGTAAAAGGGGCACCTTAAAGCAGCGACCTTACTTGAATAGGATCTGTTCTATATGCTGTGCAAATGTGTCCTTGAGTTCTAAATTTTGCACCCTTAGCGTACTCTTAAGTTTCTGCTGCTTTCTTGCTTATTGGTCCTTCCATTTCAAGTGCGACCATGTCATTTGAAATCTTGAGCTCCTCGTTATTGTCTTTGGAGCTGACATAATGCTGGTCTTTGTACTGATGTTTTCGGGCAAGAAGAATAAAGAAGAAGAAGTTTAGCAGGCCCAACACTGCGAGTAGCCAATAGAAGTAGCTCAAGTGCCCCTTGTTGAGATTACTTCTCAGCCATTGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAATCCCATGGATAGAGTGCTAAGAAAAAGTCCCGTACTCATTGATTTCATTTGTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGTAAATGCTTCTCCAGCACCGACCAAGAAGAACTGAGGTATCAACCAGAAAGCACTTATACGAGTACTTTGTCCCACAGCAGATGCCTTTCTCTCTTTCTCAACAGCCCCAGCAGCCACCATGCCAAAAATTGAGAAAACAAGTCCAATCCCAATTCTCTGAAGGCTTGTGAGACCTTGTACGTTGTGAGTCAGCTTCCGAGCAATTGGTATGAATAGTTTCTCATTCAAGGAAGTGACGAGCAGGATGGCAATGAATAGAAAGGCTGACATAGATCCAGGAGGAATCTCGAAACTGCCAACTTTTCTTTCCATAAATGATGCTTGCTCTACTGTGAATGTAGTCATTTGAGAGTAGATCGTCCAAAAGAGGATGCCAGTGGACCAAATGGGTATGAGCTTGAACACCATTTTCACTTCTTCAACTTCAGTCACTGTTGAGACTATCCATGGATTGTTTGGACCAGTGGTAGCATACTCGTCTAGAATTGCAGCCTTGTCAAGACATCTGATATTTATATTTTCATTAGTCAACGTTCCCAAATCAAAATAAATATATAACCAAATAAATTAAGTGAAGTGAATGCACCAATACGAGGATTGGTAGTAAAAGACAAGTGTGATTAGTAATGTATTATGGGATGTTTTTCCTGTTCATGAATAATACAACTTCAATTGTAAACACTATTGATGTTTGTACATTTATTGAACCAATTTTAATAACACAACTTCAATAGTAATCACTATTGGATTTTTGTACCTATTCAACAACTCCGTCTTTTCCATTATCTTCGCCTTCTATAAATATTGAAGAATTTTATCTTATAACTCTACTTTAAGCAATTGTTTCTTCAACTCTAACATATAAACTCTAGATTTCATCACTACATTCTTTTTTTTTTCTTTTGTTGATTATTCATAAACTATAGCATCTTGCAGAATGTCTTATAATACATCAAATCTAAAACAAGAAACAGATAATCAATTTTACATGGACATACAGAGAGTGAAAGAGAGGGAACGAAAAAGTAGAGAGTATTTGATGATAGATCAGAAAAACACTTACTTGAACCTGTAGGTGTAGGGAACC

mRNA sequence

ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA

Coding sequence (CDS)

ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA

Protein sequence

MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS*

Homology

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BLAST of CsaV3_2G034620 vs. NCBI nr
Match: XP_004151902.1 (uncharacterized protein LOC101219925 [Cucumis sativus] >KGN63218.1 hypothetical protein Csa_022304 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

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BLAST of CsaV3_2G034620 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.2e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

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BLAST of CsaV3_2G034620 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLPAPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

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BLAST of CsaV3_2G034620 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.7 bits (509), Expect = 6.6e-48
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

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BLAST of CsaV3_2G034620 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

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BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

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BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-05
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

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BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

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BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

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BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 16 STNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Sbjct: 2  SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

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BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASA 108
           MIQQVKRLVVVETEEMYKARKQK+EQH+ALRPPLV+NHLP PSS SA
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSSTSA 107

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BLAST of CsaV3_2G034620 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 141.0 bits (354), Expect = 5.8e-34
Identity = 71/109 (65.14%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINH-LPAPSSASAS 109
           MI QVKR+VVVETEEMY ARK+    H+ALRPPLV++H  PA  S++ S
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSNMS 109

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151902.1	2.9e-51	100.00	uncharacterized protein LOC101219925 [Cucumis sativus] >KGN63218.1 hypothetical ...	[more]
XP_008455933.1	3.2e-50	98.15	PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5...	[more]
XP_023512952.1	1.7e-48	94.44	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022944386.1	6.6e-48	92.59	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
KAG7010749.1	1.1e-47	92.59	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_2G034620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	9.4e-05	48.15	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	9.4e-05	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
C3PL27	1.2e-04	42.59	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]
A4QBL5	1.6e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	1.6e-04	45.61	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]

BLAST of CsaV3_2G034620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN29	1.4e-51	100.00	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160...	[more]
A0A1S3C214	1.5e-50	98.15	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	1.5e-50	98.15	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1FUA4	3.2e-48	92.59	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A6J1CI25	2.1e-47	92.52	uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CsaV3_2G034620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	5.8e-34	65.14	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 17..98 e-value: 2.7E-19 score: 70.7
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 19..72
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 20..69 e-value: 1.8E-16 score: 59.7
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 19..72 e-value: 2.1E-19 score: 66.9
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 1..106
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 16..73 score: 15.278877
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 19..72 e-value: 2.96472E-17 score: 67.4462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..108
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034620.1	CsaV3_2G034620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome