CsaV3_2G034590 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein 2
Location	chr2: 22982621 .. 22984210 (-)
RNA-Seq Expression	CsaV3_2G034590
Synteny	CsaV3_2G034590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTTTCCTTTTTCACCATATTATTAAACAAGCAATAGCCATGCATCTTTTCATTTACAAACCAATTTGGTTGTCCTTCTTATCTTGTTTTGTTCATTATTAAAATCATACACTCCCTTTTAATTTCCATTAACCATTAACAACTTCACATATATATTAAGTGTTAAAATTTTAAAAATTTGTAAGAAAACATTCCGAACCCATTTATAATATAAATTCATCAATTCTCCTCCACCATGCATTAATTCTTTTTTTTTTTTTCTATGCATATTCATATATGCTTCTTTCCCCAACAACAAGAACACCAAATTTTCATCTTTGTTTCTTTTTCTCTCAAAGATGCAAAAGCACAATAACGGAGTTTTGCAGGGAACACCCGCTTGTGCAGCCTGCAAACACCAGAGGAAGAAATGCCACGAGACGTGTCCGTTGGCACCTTACTTTCCTGCAGAACGGAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAATGTGACCAAAATGGTGAAAAACGTGAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTGATTTGGGAAGCTGTTTGTAGGCAAAACGACCCCGTTTTAGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGGTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATACCATGTTTGGGAGCGTGGAACAATAATAACAATAATAATAGTAATGATAATAATAATAATAATGGAAATGGAAATGGTAATTTGATTAATAATGGAAATGGGATTATGGGGATAATCAATGGAGGAGTTAATAGCAGCCATTTACTTAATTACTTTCATGATAATTATGTAAGTGCCATAGTTGATTCAAGTCCTTACAGCAATTCTTCCGCTTATAATTTACAAAGTCATGAGAAATTGATGAGATTGCAACAAGATAAAGAGATTAGTTCAAACATGGTTGTGCCACTTCAGCAGCAGCAGCATCCAACCTTTCACCATTGTTTTTAACCAACTTTCTCTAATTTGTTACATTTTTGCATTTTTAATGATGATCAACTTATCTTTTTAATCTTTACTTGAGTTGATGTAAACCTTCTTTCGTTTTTTTTTCTTCTTCTAAATTTTAGATGTTATATCTTGTGTCTGGTGGAAATCTAGAGCTCTAGATTAGGACACAATTTTACATAAGATTGAAATTTGTTAGTTCATAAACTTCTAATTAAGTTCATTTTGTGTTTATATTTATAATTTTTGAATTTAATAATTATACAATAGGTCGCTGAGTTTCCTATTTGTGCTCCAACAAGACATACAGATAAGCATCGCTCAAAAAAGAGGAAAAAAGAGCTAAACAATCATTAAAAACATGGAGTTCTTCAAATTTTCTCTAGTTTCTCAACTCTTTTCCTAAGTAATTTTTCCCAAGTTATTTTTGCAAATAGTTATTCTTCCTAATTTATTTTTGCAAAGTTATTTTTCCTACTCTTTCTATTACTAAGTTATTTTTGCAAACTTGTTTATCCTAACATATTTTTTCAAACACATTTTTT

mRNA sequence

ATGCAAAAGCACAATAACGGAGTTTTGCAGGGAACACCCGCTTGTGCAGCCTGCAAACACCAGAGGAAGAAATGCCACGAGACGTGTCCGTTGGCACCTTACTTTCCTGCAGAACGGAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAATGTGACCAAAATGGTGAAAAACGTGAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTGATTTGGGAAGCTGTTTGTAGGCAAAACGACCCCGTTTTAGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGGTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATACCATGTTTGGGAGCGTGGAACAATAATAACAATAATAATAGTAATGATAATAATAATAATAATGGAAATGGAAATGGTAATTTGATTAATAATGGAAATGGGATTATGGGGATAATCAATGGAGGAGTTAATAGCAGCCATTTACTTAATTACTTTCATGATAATTATGTAAGTGCCATAGTTGATTCAAGTCCTTACAGCAATTCTTCCGCTTATAATTTACAAAGTCATGAGAAATTGATGAGATTGCAACAAGATAAAGAGATTAGTTCAAACATGGTTGTGCCACTTCAGCAGCAGCAGCATCCAACCTTTCACCATTGTTTTTAA

Coding sequence (CDS)

ATGCAAAAGCACAATAACGGAGTTTTGCAGGGAACACCCGCTTGTGCAGCCTGCAAACACCAGAGGAAGAAATGCCACGAGACGTGTCCGTTGGCACCTTACTTTCCTGCAGAACGGAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAATGTGACCAAAATGGTGAAAAACGTGAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTGATTTGGGAAGCTGTTTGTAGGCAAAACGACCCCGTTTTAGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGGTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATACCATGTTTGGGAGCGTGGAACAATAATAACAATAATAATAGTAATGATAATAATAATAATAATGGAAATGGAAATGGTAATTTGATTAATAATGGAAATGGGATTATGGGGATAATCAATGGAGGAGTTAATAGCAGCCATTTACTTAATTACTTTCATGATAATTATGTAAGTGCCATAGTTGATTCAAGTCCTTACAGCAATTCTTCCGCTTATAATTTACAAAGTCATGAGAAATTGATGAGATTGCAACAAGATAAAGAGATTAGTTCAAACATGGTTGTGCCACTTCAGCAGCAGCAGCATCCAACCTTTCACCATTGTTTTTAA

Protein sequence

MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGLGYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHDNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPLQQQQHPTFHHCF*

Homology

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BLAST of CsaV3_2G034590 vs. NCBI nr
Match: XP_031737200.1 (LOB domain-containing protein 2 [Cucumis sativus] >KAE8652276.1 hypothetical protein Csa_022532 [Cucumis sativus])

HSP 1 Score: 473.8 bits (1218), Expect = 8.8e-130
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180
           GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD
Sbjct: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180

Query: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPLQQQQHPTFHHCF 236
           NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPLQQQQHPTFHHCF
Sbjct: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPLQQQQHPTFHHCF 235

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BLAST of CsaV3_2G034590 vs. NCBI nr
Match: XP_016901865.1 (PREDICTED: LOB domain-containing protein 2 [Cucumis melo] >TYK09538.1 LOB domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 7.7e-118
Identity = 216/238 (90.76%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNNG+LQ TPACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNGLLQATPACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180
           GYKPI+PCLG WNNNNNNNSN+N NNN N NGNLINNGNGIMGIINGGVNS+HL NY HD
Sbjct: 121 GYKPIMPCLGPWNNNNNNNSNNNTNNNNNNNGNLINNGNGIMGIINGGVNSNHLFNYLHD 180

Query: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL---QQQQHPTFHHCF 236
           NYVSAI+DSSPYSNSS YNLQS EKLMRLQQDKEI+S+MV PL   QQQQHPTFHHCF
Sbjct: 181 NYVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEITSSMVGPLQQQQQQQHPTFHHCF 238

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BLAST of CsaV3_2G034590 vs. NCBI nr
Match: XP_038900978.1 (LOB domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 409.5 bits (1051), Expect = 2.0e-110
Identity = 207/238 (86.97%), Postives = 217/238 (91.18%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNNGVLQ TPACAACKHQRKKCHETCPLAPYFPA RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNGVLQVTPACAACKHQRKKCHETCPLAPYFPANRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREEDKRKAVDSL+WEAVCRQNDPVLGPYGEYKRVLEE+KVCKLLTQNQSIMNGGQV L
Sbjct: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLTQNQSIMNGGQVEL 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180
           GYKPI+PCLG WNNNNN     N N N N + NLINNGNGIMGIINGGVNS+HL +Y HD
Sbjct: 121 GYKPIMPCLGGWNNNNN-----NKNINNNASENLINNGNGIMGIINGGVNSNHLFSYLHD 180

Query: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL---QQQQHPTFHHCF 236
           NYVSAI+DSSPYSNSS YNLQS EKLMRLQQDKEISS++VVPL   QQQQHPTFHHCF
Sbjct: 181 NYVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHPTFHHCF 233

[Close]

BLAST of CsaV3_2G034590 vs. NCBI nr
Match: XP_022140622.1 (LOB domain-containing protein 2 [Momordica charantia])

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-87
Identity = 175/240 (72.92%), Postives = 193/240 (80.42%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNN  LQ   ACAACKHQRKKCH+TCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNAALQPAAACAACKHQRKKCHDTCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREED+RKAVDSLIWEAVCRQNDPVLGPYGEY+RVLEE+KVCKLL+QNQS   G     
Sbjct: 61  NVREEDRRKAVDSLIWEAVCRQNDPVLGPYGEYRRVLEELKVCKLLSQNQS--QGQNPFA 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGI-INGGVNSSHLLNYFH 180
           GYKPI+PC G WNN  N+ +               NNGNGIMGI INGGVNSS+L NY H
Sbjct: 121 GYKPIMPCFGGWNNGTNSTN---------------NNGNGIMGININGGVNSSNLFNYLH 180

Query: 181 DNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL----QQQQHPTFHHCF 236
           DN +SAI+DSS YSNSS YNLQS EKL+RLQQDKEI+S++VVPL    QQQQHP FH  +
Sbjct: 181 DN-LSAIIDSSHYSNSSTYNLQSPEKLIRLQQDKEITSSVVVPLQQQVQQQQHPNFHQLY 222

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BLAST of CsaV3_2G034590 vs. NCBI nr
Match: XP_023533791.1 (LOB domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 2.6e-81
Identity = 169/252 (67.06%), Postives = 187/252 (74.21%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HN G LQ  PACAACKHQRKKCHETCPLAPYFPA++NREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNLGALQPAPACAACKHQRKKCHETCPLAPYFPADQNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNG---GQ 120
           NVREED+RKAV+SL+WEAVCRQNDPVLGP+GEYKRVLEE+KVCK + QNQS  +    GQ
Sbjct: 61  NVREEDRRKAVESLVWEAVCRQNDPVLGPFGEYKRVLEELKVCK-MGQNQSQSSNPFVGQ 120

Query: 121 VGLGYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNY 180
           VGL      PC G                     G++ NNGNGIMG+INGGVN +HL NY
Sbjct: 121 VGL------PCFG---------------------GSISNNGNGIMGLINGGVNGTHLFNY 180

Query: 181 FHDNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQD-KEISSNMVVPL------------- 236
            HDN +SAI+DSSPY+NSS YNLQS EKLMRLQQD KEISS +VVP              
Sbjct: 181 LHDN-LSAIIDSSPYTNSSTYNLQSPEKLMRLQQDHKEISSTIVVPFQPPPPQQQQQHQQ 223

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BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot
Match: Q9LNB9 (LOB domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=LBD2 PE=2 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-33
Identity = 89/170 (52.35%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 14  ACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDS 73
           ACA+CKHQRKKC+  C L+PYFPA + +EFQAVHKVFGVSNV KMV+ VREED+ K  DS
Sbjct: 24  ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDS 83

Query: 74  LIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGLGYKPIIPCLGAWN 133
           L WEA+ RQ DPVLG YGEY+R+ EE+K+ K L  NQ                P +G W+
Sbjct: 84  LTWEALWRQKDPVLGSYGEYRRICEELKLYKSLVHNQ----------------PLIG-WD 143

Query: 134 NNN---NNNSNDNN-----NNNGNGNGNLINNGNGI-MGIINGGVNSSHL 175
           NN    NNNSN+ N     N++G+G  ++ NNG G+   I+NGG  S ++
Sbjct: 144 NNQRVFNNNSNNKNGLAMTNSSGSGGFSVNNNGVGVNREIVNGGYASRNV 176

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BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot
Match: Q9SSM9 (LOB domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=LBD7 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.2e-18
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 12  TPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAV 71
           T ACAACKHQRKKC + C LA YFP +   +F   HK+FGVSN+TKM+K + E  +  A+
Sbjct: 11  TTACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAM 70

Query: 72  DSLIWEAVCRQNDPVLGPY--------------GEYKRVLEEVKVCKLLTQNQ 111
           ++LI+ A  R  DPV G Y               E     +++ +C+ L Q Q
Sbjct: 71  ENLIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLAQEQ 123

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot
Match: Q9SCS4 (LOB domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=LBD28 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 15  CAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSL 74
           CAACKH R+KC E C  APYFP+ +   ++AVHKVFG S+V  ++ ++    +  A+D+L
Sbjct: 13  CAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTL 72

Query: 75  IWEAVCRQNDPVLGPYGEYKRVLEEVK 102
            WEA  + NDPV G  G    +L ++K
Sbjct: 73  AWEAQVQANDPVNGCLGIIYNLLSQIK 99

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot
Match: Q9LRW1 (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-16
Identity = 54/149 (36.24%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 4   HNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVR 63
           +NN   Q   ACAACK+QR+KC   C LAPYFP +R+R+F   HK+FGVSN+TK++K++ 
Sbjct: 29  NNNSTNQ---ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLT 88

Query: 64  EEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCK-----LLTQNQSIMNGGQV 123
             +K  A+ ++++++  R NDPV G YG  K++  +++  +     +L Q     +    
Sbjct: 89  PPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRAHQ 148

Query: 124 GLGYKPIIPCLGAWNNNNNNNSNDNNNNN 148
               +P I      + ++ ++S D NNNN
Sbjct: 149 HHHQEPHIQMQEQEDLSSFSSSCDLNNNN 174

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 8.8e-16
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 7   GVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREED 66
           G L     CAACK  R++C + CP +PYF      +F +VHKVFG SNV+KM+  V E  
Sbjct: 38  GTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQ 97

Query: 67  KRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVK 102
           +  A +SL++EA  R  DPV G  G    + ++V+
Sbjct: 98  RADAANSLVYEANVRLRDPVYGCMGAISALQQQVQ 132

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL
Match: A0A5D3CE97 (LOB domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00180 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.7e-118
Identity = 216/238 (90.76%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNNG+LQ TPACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNGLLQATPACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180
           GYKPI+PCLG WNNNNNNNSN+N NNN N NGNLINNGNGIMGIINGGVNS+HL NY HD
Sbjct: 121 GYKPIMPCLGPWNNNNNNNSNNNTNNNNNNNGNLINNGNGIMGIINGGVNSNHLFNYLHD 180

Query: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL---QQQQHPTFHHCF 236
           NYVSAI+DSSPYSNSS YNLQS EKLMRLQQDKEI+S+MV PL   QQQQHPTFHHCF
Sbjct: 181 NYVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEITSSMVGPLQQQQQQQHPTFHHCF 238

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL
Match: A0A1S4E1K1 (LOB domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103495999 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.7e-118
Identity = 216/238 (90.76%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNNG+LQ TPACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNGLLQATPACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNYFHD 180
           GYKPI+PCLG WNNNNNNNSN+N NNN N NGNLINNGNGIMGIINGGVNS+HL NY HD
Sbjct: 121 GYKPIMPCLGPWNNNNNNNSNNNTNNNNNNNGNLINNGNGIMGIINGGVNSNHLFNYLHD 180

Query: 181 NYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL---QQQQHPTFHHCF 236
           NYVSAI+DSSPYSNSS YNLQS EKLMRLQQDKEI+S+MV PL   QQQQHPTFHHCF
Sbjct: 181 NYVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEITSSMVGPLQQQQQQQHPTFHHCF 238

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL
Match: A0A6J1CHJ9 (LOB domain-containing protein 2 OS=Momordica charantia OX=3673 GN=LOC111011230 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.8e-88
Identity = 175/240 (72.92%), Postives = 193/240 (80.42%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNN  LQ   ACAACKHQRKKCH+TCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNAALQPAAACAACKHQRKKCHDTCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGL 120
           NVREED+RKAVDSLIWEAVCRQNDPVLGPYGEY+RVLEE+KVCKLL+QNQS   G     
Sbjct: 61  NVREEDRRKAVDSLIWEAVCRQNDPVLGPYGEYRRVLEELKVCKLLSQNQS--QGQNPFA 120

Query: 121 GYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGI-INGGVNSSHLLNYFH 180
           GYKPI+PC G WNN  N+ +               NNGNGIMGI INGGVNSS+L NY H
Sbjct: 121 GYKPIMPCFGGWNNGTNSTN---------------NNGNGIMGININGGVNSSNLFNYLH 180

Query: 181 DNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQDKEISSNMVVPL----QQQQHPTFHHCF 236
           DN +SAI+DSS YSNSS YNLQS EKL+RLQQDKEI+S++VVPL    QQQQHP FH  +
Sbjct: 181 DN-LSAIIDSSHYSNSSTYNLQSPEKLIRLQQDKEITSSVVVPLQQQVQQQQHPNFHQLY 222

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL
Match: A0A6J1G604 (LOB domain-containing protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111451117 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.8e-81
Identity = 168/250 (67.20%), Postives = 185/250 (74.00%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HN G LQ  PACAACKHQRKKCHETCPLAPYFPA++NREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNLGALQPAPACAACKHQRKKCHETCPLAPYFPADQNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNG---GQ 120
           NVREED+RKAV+SL+WEAVCRQNDPVLGP+GEYKRVLEE+KVCK + QNQS  +    GQ
Sbjct: 61  NVREEDRRKAVESLVWEAVCRQNDPVLGPFGEYKRVLEELKVCK-MGQNQSQSSNPFVGQ 120

Query: 121 VGLGYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNY 180
           VGL      PC G                     G + NNGNGI+G+INGGVN SHL NY
Sbjct: 121 VGL------PCFG---------------------GTISNNGNGIVGLINGGVNGSHLFNY 180

Query: 181 FHDNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQD-KEISSNMVVPL-----------QQ 236
            HDN +SAI+DSSPY+NSS YNLQS EKLMRL QD KEISS +VVP            Q 
Sbjct: 181 LHDN-LSAIIDSSPYTNSSTYNLQSPEKLMRLHQDHKEISSTIVVPFQPPPPPQQQQHQH 221

[Close]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL
Match: A0A6J1I7L7 (LOB domain-containing protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111469870 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 6.2e-81
Identity = 168/248 (67.74%), Postives = 185/248 (74.60%), Query Frame = 0


Query: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60
           MQ+HN G LQ  PACAACKHQRKKCHETCPLAPYFPA++NREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNLGALQPAPACAACKHQRKKCHETCPLAPYFPADQNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNG---GQ 120
           NVREED+RKAV+SL+WEAVCRQNDPVLGP+GEYKRVLEE+KVCK + QNQS  +    GQ
Sbjct: 61  NVREEDRRKAVESLVWEAVCRQNDPVLGPFGEYKRVLEELKVCK-MGQNQSQSSNPFVGQ 120

Query: 121 VGLGYKPIIPCLGAWNNNNNNNSNDNNNNNGNGNGNLINNGNGIMGIINGGVNSSHLLNY 180
           VGL      PC G                     G++ NNGNGIMG+INGGVN SHL NY
Sbjct: 121 VGL------PCFG---------------------GSISNNGNGIMGLINGGVNGSHLFNY 180

Query: 181 FHDNYVSAIVDSSPYSNSSAYNLQSHEKLMRLQQD-KEISSNMVVPL---------QQQQ 236
            HDN +SAI+DSSPY+NSS YNLQS EKLMRL QD KEISS +VVP          Q QQ
Sbjct: 181 LHDN-LSAIIDSSPYTNSSTYNLQSPEKLMRLHQDHKEISSTIVVPFQPPPPQQQQQHQQ 219

[Close]

BLAST of CsaV3_2G034590 vs. TAIR 10
Match: AT1G06280.1 (LOB domain-containing protein 2 )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 89/170 (52.35%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 14  ACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDS 73
           ACA+CKHQRKKC+  C L+PYFPA + +EFQAVHKVFGVSNV KMV+ VREED+ K  DS
Sbjct: 24  ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDS 83

Query: 74  LIWEAVCRQNDPVLGPYGEYKRVLEEVKVCKLLTQNQSIMNGGQVGLGYKPIIPCLGAWN 133
           L WEA+ RQ DPVLG YGEY+R+ EE+K+ K L  NQ                P +G W+
Sbjct: 84  LTWEALWRQKDPVLGSYGEYRRICEELKLYKSLVHNQ----------------PLIG-WD 143

Query: 134 NNN---NNNSNDNN-----NNNGNGNGNLINNGNGI-MGIINGGVNSSHL 175
           NN    NNNSN+ N     N++G+G  ++ NNG G+   I+NGG  S ++
Sbjct: 144 NNQRVFNNNSNNKNGLAMTNSSGSGGFSVNNNGVGVNREIVNGGYASRNV 176

[Close]

BLAST of CsaV3_2G034590 vs. TAIR 10
Match: AT1G72980.1 (LOB domain-containing protein 7 )

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-19
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 12  TPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAV 71
           T ACAACKHQRKKC + C LA YFP +   +F   HK+FGVSN+TKM+K + E  +  A+
Sbjct: 11  TTACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAM 70

Query: 72  DSLIWEAVCRQNDPVLGPY--------------GEYKRVLEEVKVCKLLTQNQ 111
           ++LI+ A  R  DPV G Y               E     +++ +C+ L Q Q
Sbjct: 71  ENLIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLAQEQ 123

[Close]

BLAST of CsaV3_2G034590 vs. TAIR 10
Match: AT3G50510.1 (LOB domain-containing protein 28 )

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 15  CAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSL 74
           CAACKH R+KC E C  APYFP+ +   ++AVHKVFG S+V  ++ ++    +  A+D+L
Sbjct: 13  CAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTL 72

Query: 75  IWEAVCRQNDPVLGPYGEYKRVLEEVK 102
            WEA  + NDPV G  G    +L ++K
Sbjct: 73  AWEAQVQANDPVNGCLGIIYNLLSQIK 99

[Close]

BLAST of CsaV3_2G034590 vs. TAIR 10
Match: AT3G13850.1 (LOB domain-containing protein 22 )

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-17
Identity = 54/149 (36.24%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 4   HNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVR 63
           +NN   Q   ACAACK+QR+KC   C LAPYFP +R+R+F   HK+FGVSN+TK++K++ 
Sbjct: 29  NNNSTNQ---ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLT 88

Query: 64  EEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKVCK-----LLTQNQSIMNGGQV 123
             +K  A+ ++++++  R NDPV G YG  K++  +++  +     +L Q     +    
Sbjct: 89  PPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRAHQ 148

Query: 124 GLGYKPIIPCLGAWNNNNNNNSNDNNNNN 148
               +P I      + ++ ++S D NNNN
Sbjct: 149 HHHQEPHIQMQEQEDLSSFSSSCDLNNNN 174

[Close]

BLAST of CsaV3_2G034590 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-17
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 7   GVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREED 66
           G L     CAACK  R++C + CP +PYF      +F +VHKVFG SNV+KM+  V E  
Sbjct: 38  GTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQ 97

Query: 67  KRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVK 102
           +  A +SL++EA  R  DPV G  G    + ++V+
Sbjct: 98  RADAANSLVYEANVRLRDPVYGCMGAISALQQQVQ 132

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737200.1	8.8e-130	100.00	LOB domain-containing protein 2 [Cucumis sativus] >KAE8652276.1 hypothetical pro...	[more]
XP_016901865.1	7.7e-118	90.76	PREDICTED: LOB domain-containing protein 2 [Cucumis melo] >TYK09538.1 LOB domain...	[more]
XP_038900978.1	2.0e-110	86.97	LOB domain-containing protein 2 [Benincasa hispida]	[more]
XP_022140622.1	1.4e-87	72.92	LOB domain-containing protein 2 [Momordica charantia]	[more]
XP_023533791.1	2.6e-81	67.06	LOB domain-containing protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_2G034590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNB9	1.6e-33	52.35	LOB domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=LBD2 PE=2 SV=...	[more]
Q9SSM9	7.2e-18	41.59	LOB domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=LBD7 PE=2 SV=...	[more]
Q9SCS4	2.3e-16	44.83	LOB domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=LBD28 PE=2 S...	[more]
Q9LRW1	6.7e-16	36.24	LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 S...	[more]
Q8L5T5	8.8e-16	42.11	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of CsaV3_2G034590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE97	3.7e-118	90.76	LOB domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E1K1	3.7e-118	90.76	LOB domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103495999 PE=3 SV=...	[more]
A0A6J1CHJ9	6.8e-88	72.92	LOB domain-containing protein 2 OS=Momordica charantia OX=3673 GN=LOC111011230 P...	[more]
A0A6J1G604	4.8e-81	67.20	LOB domain-containing protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111451117 PE...	[more]
A0A6J1I7L7	6.2e-81	67.74	LOB domain-containing protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111469870 PE=3...	[more]

BLAST of CsaV3_2G034590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06280.1	1.1e-34	52.35	LOB domain-containing protein 2	[more]
AT1G72980.1	5.1e-19	41.59	LOB domain-containing protein 7	[more]
AT3G50510.1	1.6e-17	44.83	LOB domain-containing protein 28	[more]
AT3G13850.1	4.8e-17	36.24	LOB domain-containing protein 22	[more]
AT2G40470.1	6.2e-17	42.11	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 14..103 e-value: 1.7E-32 score: 112.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 13..113 score: 22.838028
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 10..228
None	No IPR available	PANTHER	PTHR31301:SF135	LOB DOMAIN-CONTAINING PROTEIN 2	coord: 10..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034590.1	CsaV3_2G034590.1	mRNA