CsaV3_2G034130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L27
Location	chr2: 22588549 .. 22589926 (+)
RNA-Seq Expression	CsaV3_2G034130
Synteny	CsaV3_2G034130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTAAACCTACTTTCTTCATTCAAAGGTCTCTCTCTCGCCTCCTCTTCCTCCTTCTTCAAAGGCGATTTCGGCTCCATTCATACCTCTCCTAAGCTCTCCGTTTCCTTCCCTAACATATTTCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGTAGCACCAAGAACGGTCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGATCAAGTTGCCAAACCTGGTTCCATTATTGTTCGTCAGCGTGGGACTAAGGTAATTTCTCACCTCAATTCCCTATATTACATCCACTTCTATTTTCTACCCTTTCCCCCCCATTCTTTAGGGCATTCTTCAGCATACCTCCAACTTTTTTTTTTTCTTTTGTAATTAACCCTCTCATGCCTCCATTATGAATCATTGCCATTAATAAAACTATTCTCTTTTGCCCGTGACGTAGTTAGCACATTGTTGTTGAACTACATAAGTATGTGTTGATTCAGTATTGTTTTGTATGTTGTTACTGAGTCACCTAGATCATATAGAATCAAATTTCTTTCTGGTTCCCCCATTGTTTAGGGCACTCTTGAGCATACATCTTGTTCTGAATCATTCTCGTTCTCTCTGCCCTTGACTTAGCTAACACATAGTTGGTGAATTACTTAAATCTAGGTTGATTCTGTATTGTTTTATACACTGTTAGTCGATCAACTAAATTACGTCGAGTTGAAGTTCGTACATGTTCCTCCCATTGTTTAGTGCATTCTTGAGCATACGTCGAAGCTTCTTTGAAATTGAGTCATGATTCTGTTATCTGGGTGCGTGCTATTTACGTTATTAATCTAGAGAAGTGCACCTCCCTTCTGTGTTCAGAATTATTCAAAAAGTTCTTCCTCTACCTGGTAGAGGTAGCTAACATTGTTAGTAAACTATGTAAATCTGTGTATTTTGTATTGTTTTACATTTTTTTTTTAAATTTCTCGATTCTATAACAGTTTCTGTTTCTGTACCAATCATTTCAGTTCCATGCCGGAAAAAATGTAGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGACTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTTTTCGCTTCGAATCTGAACCTTTCAGTATGAATCACTCTTACAAAACGAAGATATTTATTTACTTCATTGCATTGTAGGTGAGTGTTTACCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATACTTCAGGTTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCAATTACTCTTAGCTTCCACTGATGATGTTGAAACCAATCCAGTTTGCTGA

mRNA sequence

ATGACTTTAAACCTACTTTCTTCATTCAAAGGTCTCTCTCTCGCCTCCTCTTCCTCCTTCTTCAAAGGCGATTTCGGCTCCATTCATACCTCTCCTAAGCTCTCCGTTTCCTTCCCTAACATATTTCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGTAGCACCAAGAACGGTCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGATCAAGTTGCCAAACCTGGTTCCATTATTGTTCGTCAGCGTGGGACTAAGTTCCATGCCGGAAAAAATGTAGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGACTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTTTACCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATACTTCAGGTTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCAATTACTCTTAGCTTCCACTGATGATGTTGAAACCAATCCAGTTTGCTGA

Coding sequence (CDS)

ATGACTTTAAACCTACTTTCTTCATTCAAAGGTCTCTCTCTCGCCTCCTCTTCCTCCTTCTTCAAAGGCGATTTCGGCTCCATTCATACCTCTCCTAAGCTCTCCGTTTCCTTCCCTAACATATTTCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGTAGCACCAAGAACGGTCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGATCAAGTTGCCAAACCTGGTTCCATTATTGTTCGTCAGCGTGGGACTAAGTTCCATGCCGGAAAAAATGTAGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGACTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTTTACCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATACTTCAGGTTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCAATTACTCTTAGCTTCCACTGATGATGTTGAAACCAATCCAGTTTGCTGA

Protein sequence

MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETNPVC*

Homology

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BLAST of CsaV3_2G034130 vs. NCBI nr
Match: XP_004138618.1 (50S ribosomal protein L27, chloroplastic [Cucumis sativus] >XP_011649960.1 50S ribosomal protein L27, chloroplastic [Cucumis sativus] >KGN63169.1 hypothetical protein Csa_022133 [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60
           MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

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BLAST of CsaV3_2G034130 vs. NCBI nr
Match: XP_008441337.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60
           MTLNL++SF+GLSLASSSSFFKGDFGSIHT P LS+SFPN FPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQL+LASTDDVETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

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BLAST of CsaV3_2G034130 vs. NCBI nr
Match: XP_038884234.1 (50S ribosomal protein L27, chloroplastic [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60
           M+LNL+++FKGLSL SSSSFFKGDFGSI T PKLS SFPN FPLTIENAHKKGAGSTKNG
Sbjct: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQP L+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

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BLAST of CsaV3_2G034130 vs. NCBI nr
Match: XP_023550670.1 (50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550671.1 50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6578368.1 50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 169/185 (91.35%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLA--SSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60
           M+LNL+ +F+GLSLA  SSSSFFKGDFGSI   PKLSVSFPN FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

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BLAST of CsaV3_2G034130 vs. NCBI nr
Match: KAG7015950.1 (50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 169/185 (91.35%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLA--SSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60
           M+LNL+ +F+GLSLA  SSSSFFKGDFGSI   PKLSVSFPN FPLTIENAHKKGAGSTK
Sbjct: 20  MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 79

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 80  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 139

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD  E
Sbjct: 140 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 199

Query: 181 TNPVC 184
           TNPVC
Sbjct: 200 TNPVC 204

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BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot
Match: P82190 (50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 PE=1 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 8.8e-72
Identity = 142/188 (75.53%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSL--ASSSSFFKGDFG-SIHTSPKLSVSFPNIFPLTIENAHKKGAGST 60
           M+ NL++SF+G+SL  +SSSSFFKG+FG S    P  S    + FPLTIE+AHKKGAGST
Sbjct: 7   MSFNLMASFRGMSLSSSSSSSFFKGEFGPSSLRLPNKSPLSVSPFPLTIESAHKKGAGST 66

Query: 61  KNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 120
           KNGRDSKGQRLGVKI+GDQVAKPG+II+RQRGTKFH GKNVG+GKDHTIF+LIDGLVKFE
Sbjct: 67  KNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALIDGLVKFE 126

Query: 121 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLAS--TD 180
           KYGPDKKKVSVYPRE+QPENPNSYRARKRE FRLQRE+KKAR+EG   QPQL+LAS  TD
Sbjct: 127 KYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLILASAATD 186

Query: 181 DVETNPVC 184
           + + + VC
Sbjct: 187 NADESAVC 194

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BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot
Match: P30155 (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.7e-71
Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFG-SIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKN 60
           ++ +L+ +FKGLSLASSSSF KGDFG +   +PK SVSFP   PLTIE+AHKKGAGSTKN
Sbjct: 3   VSFSLVGAFKGLSLASSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGSTKN 62

Query: 61  GRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKY 120
           GRDS GQRLGVKIFGDQVAKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK+
Sbjct: 63  GRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 122

Query: 121 GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQ 167
           GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EG+I Q
Sbjct: 123 GPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot
Match: Q9FLN4 (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-68
Identity = 137/192 (71.35%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFG-SIHTSPKLSVSFPNI---FPLTIENAHKKGAGS 60
           M+LNL+ +FKGLSL+S+SSF +GD   S  TS  +++   N+    PLTIE+AHKKGAGS
Sbjct: 7   MSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGS 66

Query: 61  TKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 120
           TKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLIDGLVKF
Sbjct: 67  TKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKF 126

Query: 121 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---IIAQPQLLL-- 180
           EK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P+L+L  
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLAS 186

Query: 181 ASTDDVETNPVC 184
           AS DD E NP C
Sbjct: 187 ASVDDAEANPEC 198

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BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot
Match: O65037 (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-60
Identity = 123/192 (64.06%), Postives = 145/192 (75.52%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSL------ASSSSFFKGDFGSIHTSPKLSVSFPNIFP---LTIENAHK 60
           M   L+ +FKG+SL      +SS+SF + D  S+     + +  P   P   LTI+ AHK
Sbjct: 4   MAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMAHK 63

Query: 61  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 120
           KGAGSTKNGRDS GQRLGVKI+GDQVAKPG+II+RQRGT+ + G NVG+GKDHT+FSLID
Sbjct: 64  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLID 123

Query: 121 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLL 180
           GLVKFEKYGPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EGI+    +L 
Sbjct: 124 GLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEGIVEVQLVLA 183

Query: 181 ASTDDVETNPVC 184
           A+ +  E N  C
Sbjct: 184 AADESPEVNADC 195

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot
Match: A6Q4D3 (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpmA PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.4e-29
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 109 LIDGLVKFEKYGPDKKKVSVYPRE 133
           LIDG+VKFE+YG D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL
Match: A0A0A0LQ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60
           MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL
Match: A0A1S3B381 (50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60
           MTLNL++SF+GLSLASSSSFFKGDFGSIHT P LS+SFPN FPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQL+LASTDDVETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL
Match: A0A6J1K388 (50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489672 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 168/185 (90.81%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLA--SSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60
           M+LNL+ +F+GLSLA  SSSSFFKGDFGSI   PKLSVSFPN FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG I+QPQL+LASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSISQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL
Match: A0A6J1FG23 (50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445091 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 168/185 (90.81%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLA--SSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60
           M+LNL+ +F+GLSLA  SSSSFFKGDFGSI   PKLSVSFP  FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLAPSSSSSFFKGDFGSIQLPPKLSVSFPTRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL
Match: A0A6J1E4G2 (50S ribosomal protein L27, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430701 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.7e-84
Identity = 164/184 (89.13%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSL--ASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60
           MTLNL+ +F+GLSL  +SSSSFFKGDFGSI   P LSVSFPN FPLTIE+AHKKGAGSTK
Sbjct: 6   MTLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTK 65

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 66  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QL+LASTD  E
Sbjct: 126 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLVLASTDAPE 185

Query: 181 TNPV 183
           TNP+
Sbjct: 186 TNPI 189

[Close]

BLAST of CsaV3_2G034130 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-69
Identity = 137/192 (71.35%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MTLNLLSSFKGLSLASSSSFFKGDFG-SIHTSPKLSVSFPNI---FPLTIENAHKKGAGS 60
           M+LNL+ +FKGLSL+S+SSF +GD   S  TS  +++   N+    PLTIE+AHKKGAGS
Sbjct: 7   MSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGS 66

Query: 61  TKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 120
           TKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLIDGLVKF
Sbjct: 67  TKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKF 126

Query: 121 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---IIAQPQLLL-- 180
           EK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P+L+L  
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLAS 186

Query: 181 ASTDDVETNPVC 184
           AS DD E NP C
Sbjct: 187 ASVDDAEANPEC 198

[Close]

BLAST of CsaV3_2G034130 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CsaV3_2G034130 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CsaV3_2G034130 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CsaV3_2G034130 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138618.1	8.4e-96	100.00	50S ribosomal protein L27, chloroplastic [Cucumis sativus] >XP_011649960.1 50S r...	[more]
XP_008441337.1	1.9e-92	95.63	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo]	[more]
XP_038884234.1	1.3e-88	92.90	50S ribosomal protein L27, chloroplastic [Benincasa hispida]	[more]
XP_023550670.1	9.3e-87	91.35	50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550...	[more]
KAG7015950.1	9.3e-87	91.35	50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CsaV3_2G034130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82190	8.8e-72	75.53	50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 P...	[more]
P30155	9.7e-71	82.04	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 P...	[more]
Q9FLN4	2.7e-68	71.35	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
O65037	1.6e-60	64.06	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
A6Q4D3	5.4e-29	71.43	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpm...	[more]

BLAST of CsaV3_2G034130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ66	4.1e-96	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1	[more]
A0A1S3B381	9.4e-93	95.63	50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482...	[more]
A0A6J1K388	1.3e-86	90.81	50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FG23	2.2e-86	90.81	50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1E4G2	2.7e-84	89.13	50S ribosomal protein L27, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsaV3_2G034130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40950.1	1.9e-69	71.35	ribosomal protein large subunit 27	[more]
AT2G16930.2	1.4e-19	65.71	Ribosomal protein L27 family protein	[more]
AT2G16930.1	1.4e-19	65.71	Ribosomal protein L27 family protein	[more]
AT2G16930.3	1.4e-19	65.71	Ribosomal protein L27 family protein	[more]
AT5G15220.1	1.4e-19	65.71	Ribosomal protein L27 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..161
None	No IPR available	GENE3D	2.40.50.100		coord: 53..161 e-value: 2.1E-29 score: 103.8
None	No IPR available	PANTHER	PTHR15893:SF0	39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL	coord: 33..177
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 49..130
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 51..75 score: 66.77 coord: 76..100 score: 62.92 coord: 101..125 score: 49.23
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 48..128 e-value: 1.1E-36 score: 122.7
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 49..128 e-value: 4.3E-36 score: 122.8
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 33..177
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 48..131 score: 27.282888
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 81..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034130.1	CsaV3_2G034130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome