CsaV3_2G033950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G033950
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 22494892 .. 22495172 (-)
RNA-Seq ExpressionCsaV3_2G033950
SyntenyCsaV3_2G033950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGGTGACCACCTCATATTTCCGGTAACCTTCTTACTCCTTTTATTTTCAATTTTTTTTTTTAAAGAAAAGATCTCTCTTCTTCAGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGATTAA

mRNA sequence

ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGATTAA

Coding sequence (CDS)

ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGATTAA

Protein sequence

MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPSSLLFD*
Homology
[Close]
BLAST of CsaV3_2G033950 vs. NCBI nr
Match: KGN63149.1 (hypothetical protein Csa_022622 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 2.7e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60
          MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS
Sbjct: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60

Query: 61 SLLFD 66
          SLLFD
Sbjct: 61 SLLFD 65

[Close]
BLAST of CsaV3_2G033950 vs. NCBI nr
Match: KAA0051073.1 (putative histone chaperone ASF1A [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSP 35
          MK  IDSARHTPPQ+TD+FRALTTPAKS NRLSP
Sbjct: 1  MKFAIDSARHTPPQQTDDFRALTTPAKSRNRLSP 34

[Close]
BLAST of CsaV3_2G033950 vs. NCBI nr
Match: TYK02738.1 (putative histone chaperone ASF1A [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSP 35
          MK  IDSARHTPPQ+TD+FRALTTPAKS NRLSP
Sbjct: 1  MKFAIDSARHTPPQQTDDFRALTTPAKSRNRLSP 34

[Close]
BLAST of CsaV3_2G033950 vs. ExPASy TrEMBL
Match: A0A0A0LQ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G405000 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60
          MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS
Sbjct: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60

Query: 61 SLLFD 66
          SLLFD
Sbjct: 61 SLLFD 65

[Close]
BLAST of CsaV3_2G033950 vs. ExPASy TrEMBL
Match: A0A5D3BUS4 (Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00400 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSP 35
          MK  IDSARHTPPQ+TD+FRALTTPAKS NRLSP
Sbjct: 1  MKFAIDSARHTPPQQTDDFRALTTPAKSRNRLSP 34

[Close]
BLAST of CsaV3_2G033950 vs. ExPASy TrEMBL
Match: A0A5A7U5C5 (Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00060 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSP 35
          MK  IDSARHTPPQ+TD+FRALTTPAKS NRLSP
Sbjct: 1  MKFAIDSARHTPPQQTDDFRALTTPAKSRNRLSP 34

The following BLAST results are available for this feature:
BLAST of CsaV3_2G033950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63149.12.7e-28100.00hypothetical protein Csa_022622 [Cucumis sativus][more]
KAA0051073.11.3e-0685.29putative histone chaperone ASF1A [Cucumis melo var. makuwa][more]
TYK02738.11.3e-0685.29putative histone chaperone ASF1A [Cucumis melo var. makuwa][more]
BLAST of CsaV3_2G033950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G033950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ471.3e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G405000 PE=4 SV=1[more]
A0A5D3BUS46.3e-0785.29Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7U5C56.3e-0785.29Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
BLAST of CsaV3_2G033950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G033950.1CsaV3_2G033950.1mRNA