CsaV3_2G033780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G033780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein-like protein
Location	chr2: 22397430 .. 22400227 (-)
RNA-Seq Expression	CsaV3_2G033780
Synteny	CsaV3_2G033780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTTGGAAGGATGTGAATCCAAGTTCCTAGGACCCGCCACGTGTAAACAATGGCTAACCCTACGGTATAAACCTCCAAAGAAGATAACAAATAAATAAATATAAATATTTTTGTTCGCTGCTGCTCTCCTCTTCTCTCTCTCCAACTCCAAAGAGTAAAGAAGAACCCTTCAAAGGATCCAAAATTCACATCACACACTTCTTCTTACTTCTCACTTCTTCTCACTTCTCATCCCTAATTCATTATTCAGATTCTTCAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACAGTTTCCTCAATTTCTTATTCCAATTTTCTGTTTCACACAACACAAATACACACCAACGAATCTCTCAAATCTCCATGGCTACTTTGCATAAATTCAAGCTCTTAGCCTCTCAATGTGCCGTCGCTGGTAGCCCTACTCGAAGCCCCAACGCTAGTCCCCTCATCCATCTCCGTCGTCGCCGCCGTAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTTCCAAGATAACTCCGCCGACTCTCAAGATCTCGACGACCACGACCACGACCACGACGACAACCACAATTTGATTCCGGAGAAAAACGAGAAGGAGGTTCGAGCCAGACGAAAACTCAAGGATTTGTTCGTCTCCTCGCCGCCGCCGCTTGAGGATAGGCTCTCCGATAGAAGAATCGAAGAACAGGAAGCATTCCTAACATCGACCAACACTAACGCCGCTGGAATCAGTTCTCCATCTACCACTCGCCGCTCTCTTAGACCTGTATCGGCGACATTCCGGTACAGATTTCTCAGGCGAGCTTGGCGGCCAGTGCTCGTTGCCATCCCCGAGTAGAAGATTCTCCTCTCCGGTAAAATCTGTACGAAGAAATTCCATAATTTTTGCCTTAATAATTATCATTATTATTATTTTTTAAAATTTTCATAACATTTTTTCCCTAATAAATTCCGACGAGTCGTCTAGCGGTGGGGAGAAGAAAAAAAGTGACCAATGTAAATACAAAAATAATTACCAATGTTAATTATAATTAAAAAAATTTTTAAAAAAGAGTTATTATCATTATTACTGAAAAAAAAAAAGTAATTAAAAATTGGCGCCGTATTTTTGCTAATGTGCGCCGTAGTTGCGAAAGGACGTAACGGCCACGCGACGTTGACAGGTGACCAATCCGTTAACGGAAAATGAATATTTTCATCGATTTTAAAAACAAAAGAAAACGGTTAGCGTTAGTGAATATGAATTAATGAAAAAGATCTGTTTTGGGAGTGAGGGAAGAAAGAAATTGTAACTTAGCGGTTAATTAAATGGTAATTTAGAGATTTTGAATTTAATTAATGTCTCCACGTGTGTTTGTTTAGAAGTGTGATGGGGGAGGAGAGGTGTGTGTATATGTAAATTAATTTAATACTTAATGTTTAAAAAGAAGAAGAAAAGAAAAAAAAAAAAAAAAAGGTCACATGGGTCATTATGTGTGTGTACTTTAGAGTAGCACGATTTTAGGAAAATGTAAATCATGATGTGGAAGAATGTGGAGCACCAGATCAAAGTCATTATTAACCTTATAATTCCACTTCATCTAGTTTTTCTTTTCATCAATCCCTTTGAATTAATTGGGTTATCTCAATTTAAAAGTACAAAATTAGGTATTAAATTCATTTTGTATAATTAAACGTGGGTTTTGGAAACCATTTTTTGAAGAGTTATTTGAATTTGATTATTTTTCAAATTCACTTCAAAAACCAAAAGAAAAATAATACTGTTTTGCAGCTTTTTAGTTATGGGATAATAGAGAGATGTTTTGTTTCCGAACATAAATTATATCTATATATATTTTGATGTAAGAAATACTCATAATGTTGTATTAAAAAACTATAGCATAAGAGAGAGTAGAAGGGTGATGAAATGCAAATGGGTAGGACACTGGGGGTCCCTTGAGGTCTTTACGAAAGAGACAACATGAGGGAGTTTTGGCTTTTTGCTTTTCCTTCCTATATTTTGGTTCAACTCTTTTTACTCTAGTAAACGACAAATGTCAATTCCGCATCATATAATATGTATAAACTATGAACTATGGTTGAGTTATGCTTACTTTAACTATTTTGTAAGAGTCTATTTCTCAAATGGTGAATATAAATTGTCGAAATATATATATTATTAGGATCATTCATGTAATACTAGAGCCTAGAGTTGAAGAGGGTACAATGAATGGAGTGAGATCGCCTCTTAATGAACAAAATCTTGAAGGTGTGCCGGCATACCGTGTGAGAGTATAATTTAAAATGTTTTAAAAGACTAGTAGCTAGTATTTAAAAAGAATTCAAAGTTAATTGTATGTTTGACTTAAAAACATGTTTGGAAGTACTTAGCATAATTCAAAATTTAATTTTGTATAATTGAAATTAATCTTTATCTCTTTTGGAATCTTATAATTTGATTTGTAACTCCTGTTGATGAATTATTTTGATTAGGCATTTCATTCCCCACCAAAAGCATTAACATATGAGAAGTCCTAAGGTAATTTAAAAATAAGAATATGCATCCCACTAAAAGATGCTTTTCTTCCTAAAGTTCTCAAATTTTTGTCCTCTTTTATCCTTTTTTTTCTTCTTCTTTCTTTTGTTACCAAAATATGCTATATATTATGCTACCCCATTTGACACCCCCTTATACCTTTTTCATATTCCATCTTTTCATTTACAAATTAAGCTATGGATTCTTCTTAATTAATTGAAAATAAAAATAGTGAATCTAAAAGTTAACATG

mRNA sequence

ATGGCTACTTTGCATAAATTCAAGCTCTTAGCCTCTCAATGTGCCGTCGCTGGTAGCCCTACTCGAAGCCCCAACGCTAGTCCCCTCATCCATCTCCGTCGTCGCCGCCGTAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTTCCAAGATAACTCCGCCGACTCTCAAGATCTCGACGACCACGACCACGACCACGACGACAACCACAATTTGATTCCGGAGAAAAACGAGAAGGAGGTTCGAGCCAGACGAAAACTCAAGGATTTGTTCGTCTCCTCGCCGCCGCCGCTTGAGGATAGGCTCTCCGATAGAAGAATCGAAGAACAGGAAGCATTCCTAACATCGACCAACACTAACGCCGCTGGAATCAGTTCTCCATCTACCACTCGCCGCTCTCTTAGACCTGTATCGGCGACATTCCGGTACAGATTTCTCAGGCGAGCTTGGCGGCCAGTGCTCGTTGCCATCCCCGAGTAG

Coding sequence (CDS)

ATGGCTACTTTGCATAAATTCAAGCTCTTAGCCTCTCAATGTGCCGTCGCTGGTAGCCCTACTCGAAGCCCCAACGCTAGTCCCCTCATCCATCTCCGTCGTCGCCGCCGTAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTTCCAAGATAACTCCGCCGACTCTCAAGATCTCGACGACCACGACCACGACCACGACGACAACCACAATTTGATTCCGGAGAAAAACGAGAAGGAGGTTCGAGCCAGACGAAAACTCAAGGATTTGTTCGTCTCCTCGCCGCCGCCGCTTGAGGATAGGCTCTCCGATAGAAGAATCGAAGAACAGGAAGCATTCCTAACATCGACCAACACTAACGCCGCTGGAATCAGTTCTCCATCTACCACTCGCCGCTCTCTTAGACCTGTATCGGCGACATTCCGGTACAGATTTCTCAGGCGAGCTTGGCGGCCAGTGCTCGTTGCCATCCCCGAGTAG

Protein sequence

MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSADSQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLTSTNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE*

Homology

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BLAST of CsaV3_2G033780 vs. NCBI nr
Match: XP_004138634.1 (uncharacterized protein LOC101215025 [Cucumis sativus] >KGN63132.1 hypothetical protein Csa_021809 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT
Sbjct: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 164

[Close]

BLAST of CsaV3_2G033780 vs. NCBI nr
Match: XP_008441261.1 (PREDICTED: uncharacterized protein LOC103485443 [Cucumis melo] >TYK06680.1 protein PCF11-like [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQDLD  D D DDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQE F+T
Sbjct: 61  SQDLD--DDDDDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEEFVT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           S NTNAAGI SPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 SANTNAAGIGSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 162

[Close]

BLAST of CsaV3_2G033780 vs. NCBI nr
Match: XP_038885993.1 (uncharacterized protein LOC120076298 [Benincasa hispida])

HSP 1 Score: 267.7 bits (683), Expect = 6.7e-68
Identity = 143/164 (87.20%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASP+IHLRRRRRKTLRMLLNRTDRRRFP+QDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQD+DD   D DD+  +IPEKNEKEVRARRKLKDLFVSS PPLED++SDRRIEE+E FLT
Sbjct: 61  SQDVDD---DDDDSDLMIPEKNEKEVRARRKLKDLFVSS-PPLEDKVSDRRIEEEEGFLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           + NT+AAGI SPSTTRRSLRP+SATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 AANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE 160

[Close]

BLAST of CsaV3_2G033780 vs. NCBI nr
Match: XP_022993370.1 (uncharacterized protein LOC111489414 [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 136/164 (82.93%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAG PT+SP ASP+ HLRRRRRKTLRMLLNRTDRRRFP+QDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
            QD+DD   D DD+ N+IPEKN+KEVRARRKLKDLFVSS PPLED++SDRRIEEQEA LT
Sbjct: 61  PQDVDD---DDDDDDNMIPEKNDKEVRARRKLKDLFVSS-PPLEDKVSDRRIEEQEALLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           + NT+AAGI +PS TRRSLRP+SATFRYRFLRRAWRPVLV IPE
Sbjct: 121 TANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of CsaV3_2G033780 vs. NCBI nr
Match: XP_022939119.1 (uncharacterized protein LOC111445119 [Cucurbita moschata] >KAG7015924.1 hypothetical protein SDJN02_21028, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 7.6e-64
Identity = 135/164 (82.32%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAG PT+SP ASP+ HLRRRRRKTLRMLLNR DRRRFP+QDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
            QD+DD   D DD+ N+IPEKN+KEVRARRKLKDLFVSS PPLED++SDRRIEEQEA LT
Sbjct: 61  PQDVDD---DDDDDDNMIPEKNDKEVRARRKLKDLFVSS-PPLEDKVSDRRIEEQEALLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           + NT+AAGI +PS TRRSLRP+SATFRYRFLRRAWRPVLV IPE
Sbjct: 121 TANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL
Match: A0A0A0LQR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404840 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT
Sbjct: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 164

[Close]

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL
Match: A0A5D3C5R9 (Protein PCF11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001740 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.2e-76
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQDLD  D D DDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQE F+T
Sbjct: 61  SQDLD--DDDDDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEEFVT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           S NTNAAGI SPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 SANTNAAGIGSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 162

[Close]

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL
Match: A0A1S3B320 (uncharacterized protein LOC103485443 OS=Cucumis melo OX=3656 GN=LOC103485443 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.2e-76
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
           SQDLD  D D DDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQE F+T
Sbjct: 61  SQDLD--DDDDDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEEFVT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           S NTNAAGI SPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE
Sbjct: 121 SANTNAAGIGSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 162

[Close]

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL
Match: A0A6J1JYC4 (uncharacterized protein LOC111489414 OS=Cucurbita maxima OX=3661 GN=LOC111489414 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.7e-65
Identity = 136/164 (82.93%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAG PT+SP ASP+ HLRRRRRKTLRMLLNRTDRRRFP+QDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
            QD+DD   D DD+ N+IPEKN+KEVRARRKLKDLFVSS PPLED++SDRRIEEQEA LT
Sbjct: 61  PQDVDD---DDDDDDNMIPEKNDKEVRARRKLKDLFVSS-PPLEDKVSDRRIEEQEALLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           + NT+AAGI +PS TRRSLRP+SATFRYRFLRRAWRPVLV IPE
Sbjct: 121 TANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL
Match: A0A6J1FG66 (uncharacterized protein LOC111445119 OS=Cucurbita moschata OX=3662 GN=LOC111445119 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 135/164 (82.32%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDNSAD 60
           MATLHKFKLLASQCAVAG PT+SP ASP+ HLRRRRRKTLRMLLNR DRRRFP+QDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60

Query: 61  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRIEEQEAFLT 120
            QD+DD   D DD+ N+IPEKN+KEVRARRKLKDLFVSS PPLED++SDRRIEEQEA LT
Sbjct: 61  PQDVDD---DDDDDDNMIPEKNDKEVRARRKLKDLFVSS-PPLEDKVSDRRIEEQEALLT 120

Query: 121 STNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           + NT+AAGI +PS TRRSLRP+SATFRYRFLRRAWRPVLV IPE
Sbjct: 121 TANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of CsaV3_2G033780 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 76/177 (42.94%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 3   TLHKFKLLASQCA-VAGSPTRSPNASPLIHLRRRRRKTLRMLLNR-TDRRRFPFQDNSAD 62
           +L KFKLLA+ C+ VA SPTR    SP+IHL  RRRKTLR+LL R +DR R P   N+ D
Sbjct: 2   SLQKFKLLATHCSTVAESPTR----SPVIHL--RRRKTLRLLLTRSSDRWRLPEIQNNVD 61

Query: 63  SQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLE-------DRLSDRRIE 122
                D                  ++R+ RKL DLFVSSPP  E       D+ +   +E
Sbjct: 62  ESKKTD---------------KRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEVE 121

Query: 123 EQEAFLTSTNTNAAGISSPSTTRR-----SLRPVSA-TFRYRFLRRAWRPVLVAIPE 165
            +     +  +N AG     T RR     S+RP+S+ T R R LRR+WRPVLV IPE
Sbjct: 122 MERDVPVNGVSNNAGFGEEITARRVGFNGSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]

BLAST of CsaV3_2G033780 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 65/171 (38.01%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 1   MATLHKFKLLAS----QCAVAGSPTRSPNASPLIHLRRRRRKTLRMLLNR-TDRRRFPFQ 60
           ++ LHKFKL A+    + + AGSPT SP  SP+ +L  RRRKTLRML ++ +D RR   +
Sbjct: 3   LSRLHKFKLFAAHRSLEASTAGSPTMSPTKSPVFNL--RRRKTLRMLFDKSSDSRRRNLR 62

Query: 61  DNSADSQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSP-PPLEDRLSDRRIEE 120
               +S + D +  +         +K       RRKL++L V+SP PP + R     I E
Sbjct: 63  QILEESPESDGNSGN---------KKRGNHRATRRKLRELLVTSPSPPYKGREDIDGIGE 122

Query: 121 QEAFLTSTNTNAAGISSPSTTRRSLRPVSA-TFRYRFLRRAWRPVLVAIPE 165
           + + ++  N  + G     T RR     S  +FR R LR+ WRPVLV+IPE
Sbjct: 123 ERSEISPLNVTSNGDGRELTARRFGSSGSVQSFRLRILRKPWRPVLVSIPE 162

[Close]

BLAST of CsaV3_2G033780 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-11
Identity = 65/169 (38.46%), Postives = 81/169 (47.93%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAG-SPTRSPN--ASPLIHLRRRRRKTLRMLLNRTDRRRFPFQDN 60
           MATL +FK L +QC VA  SPTRSP+   SPL+ L RR++ TL+MLL+     R      
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQL-RRKKTTLKMLLSLASPSR------ 60

Query: 61  SADSQDLDDHDHDHDDNHNLIPEKNEKEVRARRKLKDLFVSSPPPLEDRLSDRRI--EEQ 120
             + Q L  H H              K+V A RKLKDLFVSS    E++  D R   + +
Sbjct: 61  -REQQPLIHHHH--------------KDV-AGRKLKDLFVSSSSAEEEQEEDERPKGKTK 120

Query: 121 EAFLTSTNTNAAGISSPSTTRRSLRPVSATFRYRFLRRAWRPVLVAIPE 165
           E  L +        S          PV   F  R L+RAWRP L  I E
Sbjct: 121 EEVLAAMAAKLNAASRLQCESADAAPVWFGFSKRLLQRAWRPKLGTIHE 146

The following BLAST results are available for this feature:

BLAST of CsaV3_2G033780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138634.1	2.1e-82	100.00	uncharacterized protein LOC101215025 [Cucumis sativus] >KGN63132.1 hypothetical ...	[more]
XP_008441261.1	1.5e-75	95.12	PREDICTED: uncharacterized protein LOC103485443 [Cucumis melo] >TYK06680.1 prote...	[more]
XP_038885993.1	6.7e-68	87.20	uncharacterized protein LOC120076298 [Benincasa hispida]	[more]
XP_022993370.1	2.0e-64	82.93	uncharacterized protein LOC111489414 [Cucurbita maxima]	[more]
XP_022939119.1	7.6e-64	82.32	uncharacterized protein LOC111445119 [Cucurbita moschata] >KAG7015924.1 hypothet...	[more]

BLAST of CsaV3_2G033780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G033780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQR3	1.0e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404840 PE=4 SV=1	[more]
A0A5D3C5R9	7.2e-76	95.12	Protein PCF11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G0...	[more]
A0A1S3B320	7.2e-76	95.12	uncharacterized protein LOC103485443 OS=Cucumis melo OX=3656 GN=LOC103485443 PE=...	[more]
A0A6J1JYC4	9.7e-65	82.93	uncharacterized protein LOC111489414 OS=Cucurbita maxima OX=3661 GN=LOC111489414...	[more]
A0A6J1FG66	3.7e-64	82.32	uncharacterized protein LOC111445119 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]

BLAST of CsaV3_2G033780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66890.1	5.2e-18	42.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G16200.1	1.2e-14	38.01	50S ribosomal protein-related	[more]
AT1G68430.1	6.1e-11	38.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..84
None	No IPR available	PANTHER	PTHR34542	OS08G0359900 PROTEIN	coord: 1..164
None	No IPR available	PANTHER	PTHR34542:SF6	50S RIBOSOMAL-LIKE PROTEIN	coord: 1..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G033780.1	CsaV3_2G033780.1	mRNA