CsaV3_2G029880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G029880
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 19542858 .. 19543160 (+)
RNA-Seq ExpressionCsaV3_2G029880
SyntenyCsaV3_2G029880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAATTATGCTAAATAACCAACATCCCTTCTCCCCCAAATCGAGTGATCTTGGAAACTTCTCAAAATGTGTTCATCTCCAACTACTCCCTTCAACTACTTGTCGTAAAGGGGTTGCCATCCCACGACCGACCGACCTTCCTTCTATACCACCATCACCGCCTCCGCCAACTACCAAAACTCAGGTTATAAACGCTCCATCATTCCGTCGTAGCTGGCTTATTGGATGTACAAAGCTGGTGACACTTCGAGTGGTCGCCTGCATATACATTGAGCTCTCTAAGAGCATTTTATCTTGA

mRNA sequence

ATGAAAACAATTATGCTAAATAACCAACATCCCTTCTCCCCCAAATCGAGTGATCTTGGAAACTTCTCAAAATGTGTTCATCTCCAACTACTCCCTTCAACTACTTGTCGTAAAGGGGTTGCCATCCCACGACCGACCGACCTTCCTTCTATACCACCATCACCGCCTCCGCCAACTACCAAAACTCAGGTTATAAACGCTCCATCATTCCGTCGTAGCTGGCTTATTGGATGTACAAAGCTGGTGACACTTCGAGTGGTCGCCTGCATATACATTGAGCTCTCTAAGAGCATTTTATCTTGA

Coding sequence (CDS)

ATGAAAACAATTATGCTAAATAACCAACATCCCTTCTCCCCCAAATCGAGTGATCTTGGAAACTTCTCAAAATGTGTTCATCTCCAACTACTCCCTTCAACTACTTGTCGTAAAGGGGTTGCCATCCCACGACCGACCGACCTTCCTTCTATACCACCATCACCGCCTCCGCCAACTACCAAAACTCAGGTTATAAACGCTCCATCATTCCGTCGTAGCTGGCTTATTGGATGTACAAAGCTGGTGACACTTCGAGTGGTCGCCTGCATATACATTGAGCTCTCTAAGAGCATTTTATCTTGA

Protein sequence

MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTTKTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS*
Homology
[Close]
BLAST of CsaV3_2G029880 vs. NCBI nr
Match: KGN62711.1 (hypothetical protein Csa_022609 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 9.4e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT 60
           MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT
Sbjct: 1   MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT 60

Query: 61  KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS 101
           KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS
Sbjct: 61  KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS 100

[Close]
BLAST of CsaV3_2G029880 vs. ExPASy TrEMBL
Match: A0A0A0LRR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369130 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT 60
           MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT
Sbjct: 1   MKTIMLNNQHPFSPKSSDLGNFSKCVHLQLLPSTTCRKGVAIPRPTDLPSIPPSPPPPTT 60

Query: 61  KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS 101
           KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS
Sbjct: 61  KTQVINAPSFRRSWLIGCTKLVTLRVVACIYIELSKSILS 100

The following BLAST results are available for this feature:
BLAST of CsaV3_2G029880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62711.19.4e-49100.00hypothetical protein Csa_022609 [Cucumis sativus][more]
BLAST of CsaV3_2G029880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G029880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRR94.6e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369130 PE=4 SV=1[more]
BLAST of CsaV3_2G029880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G029880.1CsaV3_2G029880.1mRNA