CsaV3_2G028310 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G028310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 18660969 .. 18662039 (+)
RNA-Seq Expression	CsaV3_2G028310
Synteny	CsaV3_2G028310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATACAAAGGTTGAATGTTATTGAAGTTGAGAAAAGAAACAAAGAGATGTACCAAACTTATATTCTATTGAGTGATTGGATTCTCTTTAACACATCCAGTAATCTAAATTTAAATAATTTAAGAGGGACCAAATTCCCACACATTACTCACAAAGTTTTTAACTTGGAGGCCAAGAATCTCATAATCCTTTCACAATTAATAAAACTATTAATATCTATTTAACAATTATAAATATAATATTTGCTTCAAACTGAAGCCGGCCGGATACAGAGCCCTTGTTCAGTTGTTCTGTTTCTGCCGTCGGTTTCCGCCGCACGATTCCCCATACCACCGCCCTCTGTTTCACTGTCCCCACCTATAAAAACCCTCAACTTTTCCCCACTCCTCTTTTCAATTCTCATTCTTAATTTTCTCTAAAACAATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAATTCCAATTTTGTTATAAAATTAAGAAATTAGTGGAAGAGGTCAGATTTTTCTTTTTTAAACTTATTTATCCATCCAAATCAGATTGCATTATAATGGCTTCGTTGAATAAGTTCTTGTTGTGATGTATCGTACTTCAGTTTTCCTTGATATTAATTCTACTTTGAATAGTTAAAAACATCCACTAAGAATGTATATGAACATATCACTCTGCTAAAAGGTACAGAAACACTGCCACCTTCACGTTCCAACTTGTAACAAATTATTAACTTAAAGCTTAAAGAGTGTATTGGATTGAATCACACATTAACAATATTAAAG

mRNA sequence

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA

Coding sequence (CDS)

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA

Protein sequence

MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL*

Homology

[Close]

BLAST of CsaV3_2G028310 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

[Close]

BLAST of CsaV3_2G028310 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 93/113 (82.30%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSP+PYSVEKKI GDQVEAEIETE +A      ALGPAVTRHIVVKSS S     SN
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSA------ALGPAVTRHIVVKSSPS----HSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE----RKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE    RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

[Close]

BLAST of CsaV3_2G028310 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-24
Identity = 74/113 (65.49%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSP P SVE  IAG Q EAE+E E+ AA     A+GP VTRHI+VKSS S     + 
Sbjct: 1   MAAMSPHPCSVENSIAGAQEEAEMEMETEAA-----AVGPDVTRHIMVKSSRS-----TQ 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 110
            +LEKAVVLRRIR RKRVNK +A VGALFSSPF DK     +RKWVDEPFTSL
Sbjct: 61  VSLEKAVVLRRIRHRKRVNKFQAVVGALFSSPFADKADETRQRKWVDEPFTSL 103

[Close]

BLAST of CsaV3_2G028310 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-18
Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
          MAAMSP P SVE  IAG Q EAE+E E+ AA     A+GP VTRHI+VKSS S     + 
Sbjct: 1  MAAMSPHPCSVENSIAGAQEEAEMEMETEAA-----AVGPDVTRHIMVKSSRS-----TQ 60

Query: 61 QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE 99
           +LEKAVVLRRIR RKRVNK +A VGALFSSPF DK +
Sbjct: 61 VSLEKAVVLRRIRHRKRVNKFQAVVGALFSSPFADKAD 88

[Close]

BLAST of CsaV3_2G028310 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAA+SP  Y V     GDQ + +   ++AA+        P VTRHI +KSS       S 
Sbjct: 1   MAAVSPHSYPV-----GDQEKDKTVADAAAS--------PDVTRHIRLKSS------HST 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 110
           Q LEKAVVLRRIRQRKRVNK +A VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 94

[Close]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.5e-49
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

[Close]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 93/113 (82.30%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSP+PYSVEKKI GDQVEAEIETE +A      ALGPAVTRHIVVKSS S     SN
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSA------ALGPAVTRHIVVKSSPS----HSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE----RKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE    RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

[Close]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL
Match: A0A6P5MGE6 (uncharacterized protein LOC110274446 OS=Arachis duranensis OX=130453 GN=LOC110274446 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 4   MSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQAL 63
           MS     VE     ++ EAE E E +          P VT  + +K S +    Q    +
Sbjct: 1   MSSNDKKVEVSKGREEDEAEFEKEESV---------PTVTSKLFLKPSEN----QKPGNM 60

Query: 64  EKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 110
           +K VVLRRIR R+RVNK+RAAVG+ FSSPF+    RKWVD+PF +L
Sbjct: 61  DKEVVLRRIRHRRRVNKVRAAVGSFFSSPFSTDHHRKWVDDPFAAL 93

[Close]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL
Match: A0A2N9G0R5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 42  VTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE--- 101
           VT H+ +K +       S Q L+K VVLRRIRQRKRVNK++A   AL SSPF+ K +   
Sbjct: 38  VTSHLYIKPT------HSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSPFSAKPDKVS 97

Query: 102 ---RKWVDEPFTSL 110
              +KW D+ F +L
Sbjct: 98  VHKKKWADDAFAAL 105

[Close]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL
Match: A0A498HNN1 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012832 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 40  PAVT-RHIVVKSSSSSSSYQSNQALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT- 99
           PA T  H  V S        ++Q L+K VVLRRIRQRKRVN++RAA+ AL SSP +    
Sbjct: 34  PAETYEHNYVSSHVHIKPTHTSQPLDKEVVLRRIRQRKRVNRVRAALQALLSSPSSPSVQ 93

Query: 100 ERKWVDEPFTS 109
           E KWVD+ F S
Sbjct: 94  ENKWVDDAFAS 104

The following BLAST results are available for this feature:

BLAST of CsaV3_2G028310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62559.1	1.3e-48	100.00	hypothetical protein Csa_022598 [Cucumis sativus]	[more]
KAA0065270.1	1.1e-34	82.30	hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa]	[more]
KAG6598407.1	8.8e-24	65.49	hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029360.1	4.2e-18	64.29	Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ...	[more]
KAG6585633.1	3.6e-17	57.52	hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_2G028310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNJ0	6.5e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1	[more]
A0A5A7VDJ5	5.3e-35	82.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6P5MGE6	1.3e-09	43.40	uncharacterized protein LOC110274446 OS=Arachis duranensis OX=130453 GN=LOC11027...	[more]
A0A2N9G0R5	5.2e-06	47.30	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1	[more]
A0A498HNN1	1.2e-05	52.11	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012832 PE=4 SV=1	[more]

BLAST of CsaV3_2G028310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35324:SF4	BNAA08G03750D PROTEIN	coord: 1..109
None	No IPR available	PANTHER	PTHR35324	BNAA08G03750D PROTEIN	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G028310.1	CsaV3_2G028310.1	mRNA