CsaV3_2G025620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G025620
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionHomeobox domain-containing protein
Locationchr2: 17611875 .. 17613584 (+)
RNA-Seq ExpressionCsaV3_2G025620
SyntenyCsaV3_2G025620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTGAGAAGACCTGGCAGGAACAGGAATTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGGTCTCTCCTCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGATACTTCCTTCTATCTTTATTTAGTGGGTCCATTTCCTCCATCTCCACCTTCATGCAGAGTCCTCTTTTTTGCCTCTTCACTCTCTCTCTCTTCCTTTTAATGGTTCTCTGAGATGGGTGTCATTCATTTTCCAGAGCTGTACGTATTTTAGCTTTAAAGTTTGAGAACAGAGATTGAGATTATACATCTCCCTGCCGTTCAATCCTCCAAACTTAAGCTTCTCGGGGTTTGAGCGCTTGAAGCTATTCCATTCTCCTTTTTTCATGCAAAATTTTGTATCACTTTTCTTTTACCATCGGCTTTATGTTGTTGTGATTTGGCAGAAGCCGGAAAAGTGGGAATACAGCACCAGTCATTATTACTTCTTTTCCCCTTGTTTTTTTCTATAAAAGCAAAGCTTCTCTTCCACTTTATCTGAACTTTCACAATGGCACCCTTTTCTGGAGAAACAAAAGAAACCAAGTTCTTTGAATCTTCTCCTTTTTCTTTTTTAAGTTGTCTTTGATCACCTGTGAGTGAAGAACCATAAAGCAGTGAACATTATAGCAATTTTTTTTCGTTTTATAACTTGCAGGTTTAAAGCTCTTCACTAAGCCATCACATCCATTTAATTTGCTTAGAAATTCAGGACACGGTCATTTTTTTTTCAGGGGATTTGGTGTGGGGCTTTCGCTCTAAGTTTCTCATCCTATATAGGATGACAGAGATTCATCAAATGGAAGGTTGGTTTCTTTGTCATTTTATGCTAATGGCTCAATGTTTATGTTCTGGCTGGTGGTTTACAGAGTGAGTTTTGATGTGGACCTTTATTTCTTCTGTCTTGTATGATGTTATGTTTGTTCCCTCCTTTGTATCGTGTGTCAAAATAAATTGAACATCTTCAACGAATGGCTTGTCAATATTAATTTTTTGCTGGTCCCTAAACGTAACATGCTTTTCACTCTTGTGGCAATAGGTTCTGGATATGTTACAACTACTAATTTCCCTTTCCAACTCTGAATAATAATAATATAGCATAGCCTGTCTCTAGAGGAATGTGAATTTGGATGTCTGGATTGAGCTGCAAGTTCATTTCTTTTTCCATTCAACTGAGAAGTTCATTTTTTGTTTGATAATGCTATATTGACTTATAAATGCTATTGAAATCGCAGCTAAAAAGTGAATGTGGTTTGAATCGAGTATGTTAATCTCAGCTGTTGCTTTGGATAAAGAATGGTAGTTTTCCGTCTAGACTGCGTATGGGTGGGCGAATGATTTGATGAATGCTCTGGTGGATATGGTAAACCCAAATTCTGTTGTTGTATGTGAAATTCTGCCTCTTGGCTTTTAGAACTCAGTTGATACGTCCAATTAATGAACTAAGCAATATTACAGCTGGATTTCCTATCTTTTTAAGTCTGCGGGAGTCTGGATGCTCTGCTCTTACTAGTGCTGATAATCATATAGTTGAACAATTGACATTTTGA

mRNA sequence

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAATTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGGGATTTGGTGTGGGGCTTTCGCTCTAAGTTTCTCATCCTATATAGGATGACAGAGATTCATCAAATGGAAGCTGGATTTCCTATCTTTTTAAGTCTGCGGGAGTCTGGATGCTCTGCTCTTACTAGTGCTGATAATCATATAGTTGAACAATTGACATTTTGA

Coding sequence (CDS)

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAATTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGGGATTTGGTGTGGGGCTTTCGCTCTAAGTTTCTCATCCTATATAGGATGACAGAGATTCATCAAATGGAAGCTGGATTTCCTATCTTTTTAAGTCTGCGGGAGTCTGGATGCTCTGCTCTTACTAGTGCTGATAATCATATAGTTGAACAATTGACATTTTGA

Protein sequence

MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWGFRSKFLILYRMTEIHQMEAGFPIFLSLRESGCSALTSADNHIVEQLTF*
Homology
BLAST of CsaV3_2G025620 vs. NCBI nr
Match: KGN62652.2 (hypothetical protein Csa_018750 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG 60
           MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG
Sbjct: 1   MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG 60

Query: 61  FRSKFLILYRMTEIHQMEAGFPIFLSLRESGCSALTSADNHIVEQLTF 109
           FRSKFLILYRMTEIHQMEAGFPIFLSLRESGCSALTSADNHIVEQLTF
Sbjct: 61  FRSKFLILYRMTEIHQMEAGFPIFLSLRESGCSALTSADNHIVEQLTF 108

BLAST of CsaV3_2G025620 vs. NCBI nr
Match: KAA0060995.1 (hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.2e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 57
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 56

BLAST of CsaV3_2G025620 vs. NCBI nr
Match: KAG7029268.1 (hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 6.4e-19
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 57
          MVLRR GRNR+FNRENPDILIMMIAVDQIIRG EQDKGDGTERKGMGPLKP TK +
Sbjct: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSE 56

BLAST of CsaV3_2G025620 vs. NCBI nr
Match: KAF3975862.1 (hypothetical protein CMV_000902 [Castanea mollissima])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          MVLRRPG NR+ NRENPDILIMM A  QI+RG  +DKG+  E++GMGPLKP T+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMNAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

BLAST of CsaV3_2G025620 vs. NCBI nr
Match: KAG6674396.1 (hypothetical protein I3842_15G039000 [Carya illinoinensis])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          M LRRPG NR+ NRENPDILI+MIA +QI+RG  +DKGD  +R+GMGPLK A +
Sbjct: 1  MGLRRPGMNRSLNRENPDILIVMIAEEQIMRGGGEDKGDQRQREGMGPLKTAAE 54

BLAST of CsaV3_2G025620 vs. ExPASy TrEMBL
Match: A0A0A0LN23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG 60
          MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRDLVWG 60

Query: 61 FRSKFLILYRMTEIHQMEA 80
          FRSKFLILYRMTEIHQMEA
Sbjct: 61 FRSKFLILYRMTEIHQMEA 79

BLAST of CsaV3_2G025620 vs. ExPASy TrEMBL
Match: A0A5A7V591 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001300 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 57
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 56

BLAST of CsaV3_2G025620 vs. ExPASy TrEMBL
Match: A0A6A5PA14 (Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 1   MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATKRDLV- 60
           M LR    NR+ NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+     
Sbjct: 1   MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATEMSGTA 60

Query: 61  --WGFRSKFLILYRMTEIHQMEAGFPIFLSLRESGCSALTSADNHIVEQL 107
                R+K+  L   +E+    +G      LRE+  +   S  N ++  L
Sbjct: 61  PKSSGRTKYKYLEISSEV-SYSSGLVPLCRLREASLNEHCSTKNLLLHLL 109

BLAST of CsaV3_2G025620 vs. ExPASy TrEMBL
Match: A0A0R0JC99 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          M LR P  NR+ NRENPDIL MMIA  QIIRG E DK D  ERK MGP+KPAT+
Sbjct: 1  MFLRVPAMNRSLNRENPDILNMMIAGKQIIRGVEDDKRDQRERK-MGPVKPATQ 53

BLAST of CsaV3_2G025620 vs. ExPASy TrEMBL
Match: A0A6A4PQS0 (Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0063111 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATK 55
          M LR    NR+ NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+
Sbjct: 1  MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATE 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62652.21.9e-55100.00hypothetical protein Csa_018750 [Cucumis sativus][more]
KAA0060995.16.2e-2294.64hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa][more]
KAG7029268.16.4e-1989.29hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF3975862.11.7e-1168.52hypothetical protein CMV_000902 [Castanea mollissima][more]
KAG6674396.11.1e-1066.67hypothetical protein I3842_15G039000 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LN233.9e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1[more]
A0A5A7V5913.0e-2294.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6A5PA141.7e-0943.64Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3... [more]
A0A0R0JC996.5e-0968.52Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1[more]
A0A6A4PQS06.5e-0967.27Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=38... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G025620.1CsaV3_2G025620.1mRNA