CsaV3_2G024730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G024730
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRNA polymerases N / 8 kDa subunit
Locationchr2: 17129297 .. 17130216 (+)
RNA-Seq ExpressionCsaV3_2G024730
SyntenyCsaV3_2G024730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTTATATTTTTTTTAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGACGAATGCTCATGACTCATGTTGACCTTATGAAAAGCTTCTTAATTACAATAGTAATCCCTTTTCGCTTTCCTTCTCTTCCTTCATGCACGAGCTGTTTGCCTACTTCAGTTTTTCGCTGCCCTTTCACACATTTATCGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGGCGGGGGAAAAGTTTTCTGCTTGTTCATGTGCTGTGCTGTGCAGGAGTCAGTATTGGCGTTTACTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTTAATTGCTGATTTTATCAAGGGTTTACTAGCTTGTAGGAATTACATATCAGAACTGTGTACTATCATAATGTTGAAAGATGGTTAG

mRNA sequence

ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGAGTCAGTATTGGCGTTTACTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTTAATTGCTGATTTTATCAAGGGTTTACTAGCTTGTAGGAATTACATATCAGAACTGTGTACTATCATAATGTTGAAAGATGGTTAG

Coding sequence (CDS)

ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGAGTCAGTATTGGCGTTTACTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTTAATTGCTGATTTTATCAAGGGTTTACTAGCTTGTAGGAATTACATATCAGAACTGTGTACTATCATAATGTTGAAAGATGGTTAG

Protein sequence

MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDLLQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLACRNYISELCTIIMLKDG*
Homology
[Close]
BLAST of CsaV3_2G024730 vs. NCBI nr
Match: KAE8652040.1 (hypothetical protein Csa_018608 [Cucumis sativus])

HSP 1 Score: 415.2 bits (1066), Expect = 3.1e-112
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC 60
           MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC
Sbjct: 1   MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC 60

Query: 61  FLYPSMSHCLWVIGNKWDHYLDLLQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTL 120
           FLYPSMSHCLWVIGNKWDHYLDLLQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTL
Sbjct: 61  FLYPSMSHCLWVIGNKWDHYLDLLQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTL 120

Query: 121 PFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLA 180
           PFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLA
Sbjct: 121 PFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLA 180

Query: 181 CRNYISELCTIIMLKDG 198
           CRNYISELCTIIMLKDG
Sbjct: 181 CRNYISELCTIIMLKDG 197

[Close]
BLAST of CsaV3_2G024730 vs. NCBI nr
Match: MBA0772788.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 21 QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHY 80
          Q+   +DD+PS+LLHLR+G                  F CF        + VIGNKWD Y
Sbjct: 25 QEVAEQDDNPSSLLHLRKGN-----------------FLCF--------IMVIGNKWDTY 70

Query: 81 LDLLQADYSEG 92
          LDLLQADY+EG
Sbjct: 85 LDLLQADYTEG 70

[Close]
BLAST of CsaV3_2G024730 vs. ExPASy TrEMBL
Match: A0A7J9EIX9 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_008111 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-05
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 21 QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHY 80
          Q+   +DD+PS+LLHLR+G                  F CF        + VIGNKWD Y
Sbjct: 25 QEVAEQDDNPSSLLHLRKGN-----------------FLCF--------IMVIGNKWDTY 70

Query: 81 LDLLQADYSEG 92
          LDLLQADY+EG
Sbjct: 85 LDLLQADYTEG 70

[Close]
BLAST of CsaV3_2G024730 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 22/36 (61.11%), Postives = 23/36 (63.89%), Query Frame = 0 

Query: 56 IPFSCFLYPSMSHCLWVIGNKWDHYLDLLQADYSEG 92
          IP  CF       C  VIGNKWD YLDLLQ DY+EG
Sbjct: 3  IPVRCFT------CGKVIGNKWDQYLDLLQLDYTEG 32

[Close]
BLAST of CsaV3_2G024730 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 56 IPFSCFLYPSMSHCLWVIGNKWDHYLDLLQADYSEG 92
          +P  CF       C  VIGNKWD YL+LLQADY+EG
Sbjct: 3  VPVRCFT------CGKVIGNKWDTYLELLQADYAEG 32

The following BLAST results are available for this feature:
BLAST of CsaV3_2G024730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652040.13.1e-112100.00hypothetical protein Csa_018608 [Cucumis sativus][more]
MBA0772788.11.6e-0445.07hypothetical protein [Gossypium trilobum][more]
BLAST of CsaV3_2G024730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G024730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J9EIX97.9e-0545.07Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_008111 PE=4 SV=1[more]
BLAST of CsaV3_2G024730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11475.11.0e-0461.11RNA polymerases N / 8 kDa subunit [more]
AT1G61700.11.7e-0458.33RNA polymerases N / 8 kDa subunit [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G024730.1CsaV3_2G024730.1mRNA