CsaV3_2G024600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G024600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 17051723 .. 17052257 (-)
RNA-Seq Expression	CsaV3_2G024600
Synteny	CsaV3_2G024600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGGAAAGCAGTGGAAGTAATGGAAAAGGCATCATAAATTCACAAGAGAATCAGCAAGGCTTCCGGGAAAGTGGCGATCATATGAATGTATTTGTTTAATTAATTGCATTGCGTCTCTTTGACGTCATGCACATTCATCATTTGAAATGAAGTGTGTACATTTGAAGTCCTAATATCTCATGTCACTTACCTCTATCTCTTTTTTTTCCCTATTTCAAAATACCTCTGTTCTCCAACACCATAAAGCATTCAAATGATTGGACGGCTAGAGGCCTTCTGCTGACCCACGTATTGCCTGCCCTATTAGTTTAATCTTTCTTTTGGCTATGATCATGTTTCTACTCGAAACCAGGGCACTTGTAGTTTCGTCTTTATATTTTTGGTCGACCTGATGTTTGTAAATTCTATTAGTAGTAGTGTCTATGGGATTCTTAACTAGAAGTTGGGAGGTGTTATGAAATGTTTAATACCAAGCCCTGATTGGCTTACTCTGATCTCCTTCCACGAATCTCACGGCTGTGGAGGATGA

mRNA sequence

ATGAGACAGGAAAGCAGTGGAAGTAATGGAAAAGGCATCATAAATTCACAAGAGAATCAGCAAGGCTTCCGGGAAAGTGGCGATCATATGAATAGGCCTTCTGCTGACCCACGTATTGCCTGCCCTATTAGTTTAATCTTTCTTTTGGCTATGATCATGTTTCTACTCGAAACCAGGGCACTTAAGTTGGGAGGTGTTATGAAATGTTTAATACCAAGCCCTGATTGGCTTACTCTGATCTCCTTCCACGAATCTCACGGCTGTGGAGGATGA

Coding sequence (CDS)

ATGAGACAGGAAAGCAGTGGAAGTAATGGAAAAGGCATCATAAATTCACAAGAGAATCAGCAAGGCTTCCGGGAAAGTGGCGATCATATGAATAGGCCTTCTGCTGACCCACGTATTGCCTGCCCTATTAGTTTAATCTTTCTTTTGGCTATGATCATGTTTCTACTCGAAACCAGGGCACTTAAGTTGGGAGGTGTTATGAAATGTTTAATACCAAGCCCTGATTGGCTTACTCTGATCTCCTTCCACGAATCTCACGGCTGTGGAGGATGA

Protein sequence

MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRALKLGGVMKCLIPSPDWLTLISFHESHGCGG*

Homology

[Close]

BLAST of CsaV3_2G024600 vs. NCBI nr
Match: KGN62286.1 (hypothetical protein Csa_018733 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA 60
          MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA
Sbjct: 1  MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA 60

Query: 61 LKLGGVMKCLIPSPDWLTLISFHESHGCGG 91
          LKLGGVMKCLIPSPDWLTLISFHESHGCGG
Sbjct: 61 LKLGGVMKCLIPSPDWLTLISFHESHGCGG 90

[Close]

BLAST of CsaV3_2G024600 vs. ExPASy TrEMBL
Match: A0A0A0LQK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348240 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA 60
          MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA
Sbjct: 1  MRQESSGSNGKGIINSQENQQGFRESGDHMNRPSADPRIACPISLIFLLAMIMFLLETRA 60

Query: 61 LKLGGVMKCLIPSPDWLTLISFHESHGCGG 91
          LKLGGVMKCLIPSPDWLTLISFHESHGCGG
Sbjct: 61 LKLGGVMKCLIPSPDWLTLISFHESHGCGG 90

The following BLAST results are available for this feature:

BLAST of CsaV3_2G024600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62286.1	3.1e-43	100.00	hypothetical protein Csa_018733 [Cucumis sativus]	[more]

BLAST of CsaV3_2G024600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G024600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQK1	1.5e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348240 PE=4 SV=1	[more]

BLAST of CsaV3_2G024600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G024600.1	CsaV3_2G024600.1	mRNA