CsaV3_2G024330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G024330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transcription termination factor MTERF8
Location	chr2: 16868391 .. 16870342 (+)
RNA-Seq Expression	CsaV3_2G024330
Synteny	CsaV3_2G024330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAAGTCGAGCAAAGTTAAGCCCAAATAGTTGGTCTATTTGCTTCAAATATTTATTAGGGTGTAATAGTTATTAACACTTCACTTGTTTGTTTTTATGGTTAAAATAAGTTTAGGGTTGTAGGAACTACTGTGTTCAACAGAACCCCAATCGTCACAAGTAGCACTCGGCAGTCGGTGGATACATGCCCACCCAAACCTCTTTATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGATAACCGACATCATATGATAGTTATAGCATTTTGATCTTTTAGGAATGTACCAACTTGGCATGAGACTGCGCCAAGAGAAGTAAGTAGTTATGATGCTTAATTTTAAAGATCGGTATCATTGATGATTGGGGCCGGGTTTCTCTTACATTTACAAGAGAGAAAGATTGTTGTTCTCTTTGGTTAGCGGGTCTGTATCTCTTGTTTTGTTTGCTTGTTCTTCTTCTCGCTTCCTTTTGGAAGATTATTATATCTTAGAATTTATTCATTTATATCAATCAACCAAAAGTTTGATCATCTGGTTAGTGTATATATTTGGAATTCAACTACATGTGCAAACTCAAGTTTCGATTCTCTTCCCATTTATTTTCCTTATCATATTATGATTATATCATAAAACTATTTGTAGTAGTCATAGTCACAAAAATCTAACCTTATTTATCGTAACTCTTGTACAATACAAGATAGTCTTTGTTTATAATCTAACAAAATGCTATAAATCATATCGACAACGTCAAATCAAGTAAATCCCACTCACAAG

mRNA sequence

ATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGA

Coding sequence (CDS)

ATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGA

Protein sequence

MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC*

Homology

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_004143080.2 (uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical protein Csa_018661 [Cucumis sativus])

HSP 1 Score: 803.9 bits (2075), Expect = 6.3e-229
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 403
           MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 402

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_008444984.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo] >KAA0054069.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa] >TYJ96854.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa])

HSP 1 Score: 612.1 bits (1577), Expect = 3.5e-171
Identity = 311/382 (81.41%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLRLFAQDL++FTHNNTTIGLK LSSLSQTPQSTND T+DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+ RLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLANPDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN L +VI RDP IL RSLDKQIVPCIDFL NFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APNIEVLRANGVLDSNIAK+L +RPIALSRDVE F DIVEK +E G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLC +SSMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT EDISKY++LLN SLEKR+IPRSSI++HLISKGFIKRKS G AL  PEH+FLEKFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           MKYLS+DP+LLEMYQEKKKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_004138819.1 (uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical protein Csa_022198 [Cucumis sativus])

HSP 1 Score: 608.2 bits (1567), Expect = 5.1e-170
Identity = 302/382 (79.06%), Postives = 340/382 (89.01%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M NFL KPSLLRL+AQDLR+F HN TTIGL FLSSLSQ+PQSTN  T+DYLIHTIGLSK 
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+I LKP++ PDSVLALFNAYGFTPS  A+IF R+P LLLA+PD TLKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGNFL D+I R+P IL RSLDK+IVPC DFLINFFGSTDCIVSLF T HRTRVLH
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEF+APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I+GLC +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ K
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           M+YLSEDP+LLEMYQEKKK+A+
Sbjct: 361 MQYLSEDPHLLEMYQEKKKIAI 382

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_008445328.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis melo] >KAA0064842.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 604.7 bits (1558), Expect = 5.6e-169
Identity = 310/383 (80.94%), Postives = 337/383 (87.99%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLR FAQDLR+FTHNNTTIGLKFLSSLSQTPQSTND T DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+IRLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLA+PDTTLKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN LADVI RDP IL RSLDKQIVPCIDFLINFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APN+EVLRANGV DSNIAK+L +RPIALS+DVE F DIVEKT+E G NPSSLMF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHG+C ++SMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT ED+SKY +LLN SLEKR+IPRSSI+Q LISKGFIKRKS G AL  PE  FLEKFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQE-KKKMAL 383
           MKYLSEDP+LLEMYQE KKKMA+
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_022132136.1 (transcription termination factor MTERF8, chloroplastic-like [Momordica charantia])

HSP 1 Score: 517.3 bits (1331), Expect = 1.2e-142
Identity = 272/382 (71.20%), Postives = 310/382 (81.15%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M+NFL K + LRL A+DLR FT N+ +IGL   SSLSQ  QSTN+ TVDYL+ T+GLSK 
Sbjct: 1   MSNFLFK-APLRLLARDLRKFTDNSISIGLNSFSSLSQISQSTNNRTVDYLVRTLGLSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SA+A AK+I LK TA+PDSV+ALF AYGF PS+ ASIF R PSLLLA+PDTTLKPK EFL
Sbjct: 61  SAVAVAKRIHLKRTANPDSVIALFEAYGFAPSNTASIFCRNPSLLLADPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NG+SG  L DVI RDP IL RSLDKQI+PCIDFL NFFGSTD IVSLFS    T VLH
Sbjct: 121 SQNGVSGQVLVDVISRDPSILRRSLDKQIIPCIDFLRNFFGSTDGIVSLFSARRGTWVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
            FSE VAPNIE LRA GV DSNIAK++W+RP  LSRD E F DIVEKT+E GFNPSSLMF
Sbjct: 181 KFSESVAPNIERLRAYGVPDSNIAKMIWVRPRTLSRDAEGFIDIVEKTKEAGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I+GLCT S M KDKWLSKL +F+SFGWS+EQFQS+FLK+P  MNSSEE +KRALDFF+ K
Sbjct: 241 IYGLCTFSGMKKDKWLSKLQVFKSFGWSEEQFQSLFLKQPKFMNSSEEQIKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
            DWT E+ISKY ++L  S EKR+IPRSSILQHLISKGFIK+ SVG A    E KFL KFV
Sbjct: 301 LDWTPEEISKYPIVLFLSFEKRVIPRSSILQHLISKGFIKKTSVGKAFMIREDKFLVKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           M+YLS+DP+LLEMYQ  KKMA+
Sbjct: 361 MQYLSKDPHLLEMYQ--KKMAI 379

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BLAST of CsaV3_2G024330 vs. ExPASy Swiss-Prot
Match: Q9FK23 (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-05
Identity = 53/230 (23.04%), Postives = 100/230 (43.48%), Query Frame = 0


Query: 97  IFSRRPSLLLANPDTTLKPKFEFLSRNGISGNF-LADVIDRDPLILCRSLDKQIVPCIDF 156
           I +RRP +L ++ D+ L P+ +F+       +F    V+ R P IL  S++  +   ++F
Sbjct: 234 IIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVE-HMNGQVEF 293

Query: 157 LINFFGSTDCIVSLFSTAH-RTRVLHTFSE-FVAPNIEVLRANGVLDSNIAKLLWMRPIA 216
           L +F G T     +F   H    V+ T  E  + P IE L+  G     + K L   P+ 
Sbjct: 294 LKSFAGLTS--EQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLI 353

Query: 217 LSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQ 276
           L+      +  +    + G+   +      +  ++  S D     + L+ S+G S E   
Sbjct: 354 LALSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDIL 413

Query: 277 SMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRL 324
           +M  K P V+  +   L+  L++ +       E++  +   L + L+ R+
Sbjct: 414 AMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRI 460

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BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL
Match: A0A0A0LK19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1)

HSP 1 Score: 803.9 bits (2075), Expect = 3.1e-229
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 403
           MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 402

[Close]

BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL
Match: A0A5A7UKN0 (Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00090 PE=3 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.7e-171
Identity = 311/382 (81.41%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLRLFAQDL++FTHNNTTIGLK LSSLSQTPQSTND T+DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+ RLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLANPDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN L +VI RDP IL RSLDKQIVPCIDFL NFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APNIEVLRANGVLDSNIAK+L +RPIALSRDVE F DIVEK +E G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLC +SSMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT EDISKY++LLN SLEKR+IPRSSI++HLISKGFIKRKS G AL  PEH+FLEKFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           MKYLS+DP+LLEMYQEKKKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

[Close]

BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL
Match: A0A1S3BCI2 (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488160 PE=3 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.7e-171
Identity = 311/382 (81.41%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLRLFAQDL++FTHNNTTIGLK LSSLSQTPQSTND T+DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+ RLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLANPDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN L +VI RDP IL RSLDKQIVPCIDFL NFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APNIEVLRANGVLDSNIAK+L +RPIALSRDVE F DIVEK +E G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLC +SSMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT EDISKY++LLN SLEKR+IPRSSI++HLISKGFIKRKS G AL  PEH+FLEKFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           MKYLS+DP+LLEMYQEKKKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

[Close]

BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL
Match: A0A0A0LQN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.5e-170
Identity = 302/382 (79.06%), Postives = 340/382 (89.01%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M NFL KPSLLRL+AQDLR+F HN TTIGL FLSSLSQ+PQSTN  T+DYLIHTIGLSK 
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+I LKP++ PDSVLALFNAYGFTPS  A+IF R+P LLLA+PD TLKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGNFL D+I R+P IL RSLDK+IVPC DFLINFFGSTDCIVSLF T HRTRVLH
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEF+APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I+GLC +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ K
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           M+YLSEDP+LLEMYQEKKK+A+
Sbjct: 361 MQYLSEDPHLLEMYQEKKKIAI 382

[Close]

BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL
Match: A0A5A7V906 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001540 PE=3 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 2.7e-169
Identity = 310/383 (80.94%), Postives = 337/383 (87.99%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLR FAQDLR+FTHNNTTIGLKFLSSLSQTPQSTND T DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+IRLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLA+PDTTLKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN LADVI RDP IL RSLDKQIVPCIDFLINFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APN+EVLRANGV DSNIAK+L +RPIALS+DVE F DIVEKT+E G NPSSLMF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHG+C ++SMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT ED+SKY +LLN SLEKR+IPRSSI+Q LISKGFIKRKS G AL  PE  FLEKFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQE-KKKMAL 383
           MKYLSEDP+LLEMYQE KKKMA+
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

[Close]

BLAST of CsaV3_2G024330 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 186.8 bits (473), Expect = 3.4e-47
Identity = 117/332 (35.24%), Postives = 180/332 (54.22%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           T++YLI + GLS  SA  A++++ L     P++VL L   +GFT + I+S+  +RP LLL
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
           AN ++ L PK  F    G+S + LA  +  DP IL RSL  Q++P  +FL +   S + I
Sbjct: 131 ANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKI 190

Query: 167 VSLFSTAHRTR--VLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDI 226
           V   +   RT    L   ++ + PNI  +   GV +  I  LL   P A+ +    F  I
Sbjct: 191 V---AALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAI 250

Query: 227 VEKTRERGFNPSSLMFIHGLCTLSSM-SKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVM 286
            ++ +E GFNP    F+  +  LS   +K  W     +++ +GWS++     F K P  M
Sbjct: 251 AKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCM 310

Query: 287 NSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRK- 346
             SE  + R +++FV + +     I++  ++L FSLEKR+IPR S+ + L+S G +K   
Sbjct: 311 MLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDW 370

Query: 347 SVGSALNSPEHKFLEKFVMKYLSEDPNLLEMY 375
           S+ S L   E  FLEK V+KY  E P L+ +Y
Sbjct: 371 SLTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]

BLAST of CsaV3_2G024330 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-42
Identity = 99/334 (29.64%), Postives = 167/334 (50.00%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ + GLS  SA + ++ ++L  +  PDSVLALF  +GFT   I S+    P +L 
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
            +P+  + PK  F S  G S +  A +I   P +L  SL K+++PC D L +     + +
Sbjct: 118 LSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESV 177

Query: 167 VSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVE 226
           V       R   L   +  V+  + + R  GV D +I  L+   P         F +++ 
Sbjct: 178 VKCLKRGIRCFSL-KITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLN 237

Query: 227 KTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSS 286
           +    GF+P    F+H +      S+     K  LF+ FGWS E F +  ++ P  +  S
Sbjct: 238 RVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVS 297

Query: 287 EEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVG- 346
           +E +   L++ V        DI    ++L+ S+EKR+ PR+ ++  L+SKG +K++ +  
Sbjct: 298 DEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINY 357

Query: 347 -SALNSPEHKFLEKFVMKYLSEDPNLLEMYQEKK 379
            + L     +F++KFV+KY  E P L++ +   +
Sbjct: 358 FTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSNR 390

[Close]

BLAST of CsaV3_2G024330 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-32
Identity = 89/339 (26.25%), Postives = 169/339 (49.85%), Query Frame = 0


Query: 35  SLSQTPQSTNDPTVDYLIHTIGLSKASALAAAKQI-RLKPTAHPDSVLALFNAYGFTPSH 94
           S + TP S ++P     +   G  K  A+A A +   LK    P SV+ +  +Y F+ + 
Sbjct: 28  SSNATPASISNPAFVEFLRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQ 87

Query: 95  IASIFSRRPSLLLANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCI 154
           I       P ++  N +  L+PK  F    G +G+ L   + ++  ++  SL K+++P +
Sbjct: 88  IQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTV 147

Query: 155 DFLINFFG-STDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPI 214
           + L +      + +  + S      +    + F+ PNI  L   G++ S +A LL  +P 
Sbjct: 148 EILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPR 207

Query: 215 ALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQF 274
             +   E     V +  + GF  +S M +H + +LSS+S+  +  K+ LF + G+S+++ 
Sbjct: 208 IFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEI 267

Query: 275 QSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQH 334
             +  + P ++  SE+ L    +F++ +     E ++K   +L+++LEKR+IPR  +LQ 
Sbjct: 268 TDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQI 327

Query: 335 LISKGFI-----KRKSVGSALNSPEHKFLEKFVMKYLSE 367
           L  KG +     K+K++   +   E  FLEK+V+++  E
Sbjct: 328 LREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDE 366

[Close]

BLAST of CsaV3_2G024330 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-29
Identity = 101/370 (27.30%), Postives = 173/370 (46.76%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ ++GL K  A + ++++  +   +PDSVL L  ++GFT S I++I +  P LL+
Sbjct: 54  TVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLV 113

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDF----LINFFGS 166
           A+ + +L PK +FL   G S + L +++   P IL +   K I    DF    L++    
Sbjct: 114 ADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSK 173

Query: 167 TDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDV---- 226
           ++     F   +    +         N+ VLR  G+      KLL+  P+ +S DV    
Sbjct: 174 SEKSCQPFPQGNLENKIR--------NLSVLRELGMPH----KLLF--PLLISCDVPVFG 233

Query: 227 -EWFTDIVEKTRERGFNPSSLMFIHGLCTLSSM--------------------------- 286
            E F + ++K  E GF+PS+  F+  LC +  +                           
Sbjct: 234 KEKFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFK 293

Query: 287 --------SKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWD 346
                   S+ K L+ +  F   G+S ++F  +  + P  +  S E +K+  +F V K +
Sbjct: 294 RWPNFLTHSEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMN 353

Query: 347 WTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFI--KRKSVGSALNSPEHKFLEKFV 371
           W  + +     +L +SLEKR +PR +++Q LISKG I  +  S+       +  FL ++V
Sbjct: 354 WPLKALVSNPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYV 407

[Close]

BLAST of CsaV3_2G024330 vs. TAIR 10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-29
Identity = 99/370 (26.76%), Postives = 174/370 (47.03%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ ++GLSK  A + ++++  +   +PDSVL+LF +YGFT S I++I +  P LL+
Sbjct: 54  TVSYLVDSLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLV 113

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
           A+    L  K + L   G S + + +++   P IL +         +  +I    S+   
Sbjct: 114 ADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKKSITVYYDAVKDIIVADTSSSYE 173

Query: 167 VSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDV---EWFTD 226
           +   S  ++ R           N+  LR  G+    +  LL    ++ S+ V   E F  
Sbjct: 174 LPQGSQGNKIR-----------NVSALRELGMPSRLLLPLL----VSKSQPVCGKENFDA 233

Query: 227 IVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVM 286
            ++K  E GF+P++  F+  L  L  MS+     K+ +FRS G++ +    +F K P V+
Sbjct: 234 SLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVL 293

Query: 287 NSSE-----------------------------------EHLKRALDFFVIKWDWTWEDI 346
             S+                                   E +K+  +F V K  W    +
Sbjct: 294 KVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 353

Query: 347 SKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKS----VGSALNSPEHKFLEKFVMKYL 375
             +  +  +S+EKR+IPR +IL+ L+SKG +++ S    V S L+  +  FL+++VMK+ 
Sbjct: 354 VLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHN 408

The following BLAST results are available for this feature:

BLAST of CsaV3_2G024330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143080.2	6.3e-229	100.00	uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical ...	[more]
XP_008444984.1	3.5e-171	81.41	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
XP_004138819.1	5.1e-170	79.06	uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical ...	[more]
XP_008445328.1	5.6e-169	80.94	PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis ...	[more]
XP_022132136.1	1.2e-142	71.20	transcription termination factor MTERF8, chloroplastic-like [Momordica charantia...	[more]

BLAST of CsaV3_2G024330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK23	1.1e-05	23.04	Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_2G024330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK19	3.1e-229	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1	[more]
A0A5A7UKN0	1.7e-171	81.41	Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BCI2	1.7e-171	81.41	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A0A0LQN0	2.5e-170	79.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1	[more]
A0A5A7V906	2.7e-169	80.94	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CsaV3_2G024330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.4e-47	35.24	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	3.3e-42	29.64	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	1.1e-32	26.25	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	1.4e-29	27.30	Mitochondrial transcription termination factor family protein	[more]
AT1G61990.1	2.4e-29	26.76	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 95..126 e-value: 0.0014 score: 27.9 coord: 238..268 e-value: 990.0 score: 3.9 coord: 131..163 e-value: 0.29 score: 20.2 coord: 273..304 e-value: 25.0 score: 13.8 coord: 305..339 e-value: 6.2 score: 15.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 152..356 e-value: 4.9E-19 score: 68.4 coord: 81..218 e-value: 9.7E-14 score: 51.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..388
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 162..371 e-value: 1.6E-33 score: 118.0
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 1..388

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G024330.1	CsaV3_2G024330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding