CsaV3_2G019470 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G019470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	MADS-box domain-containing protein
Location	chr2: 15488782 .. 15489524 (+)
RNA-Seq Expression	CsaV3_2G019470
Synteny	CsaV3_2G019470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTAATTATAATTATAGTTAAATATGCATGTTTGGATTTACTATTTGTTTATAGTTTAACAATCTTTGTGTGAGTTAATTTGTTATTATATTATGAATGTTGATTAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTACTGATTATGGGATGTTTGGAATTAGGTCATCAATGGAGCAAACACAAGGCATAA

mRNA sequence

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTCATCAATGGAGCAAACACAAGGCATAA

Coding sequence (CDS)

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTCATCAATGGAGCAAACACAAGGCATAA

Protein sequence

MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEESHQWSKHKA*

Homology

[Close]

BLAST of CsaV3_2G019470 vs. NCBI nr
Match: KAE8651989.1 (hypothetical protein Csa_016959 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 8.1e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180

Query: 181 KCKQVMGFDHEEESHQWSKHKA 203
           KCKQVMGFDHEEESHQWSKHKA
Sbjct: 181 KCKQVMGFDHEEESHQWSKHKA 202

[Close]

BLAST of CsaV3_2G019470 vs. NCBI nr
Match: XP_011650173.1 (floral homeotic protein DEFICIENS [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 3.9e-102
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180

Query: 181 KCKQVMGFDHEEES 195
           KCKQVMGFDHEEES
Sbjct: 181 KCKQVMGFDHEEES 194

[Close]

BLAST of CsaV3_2G019470 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa] >TYK02066.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-87
Identity = 176/194 (90.72%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCV VHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPP  DEVN+MIASYKTNCL+KR RK+FGLIDFFSERKKKVETDMSKLRKDV+E RF
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
             WDERLDHLLEDQLRVLM+ELDSKIEIAKKRIEI TE  YNVEEGTSVESS QTLNANM
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANM 180

Query: 181 KCKQVMGFDHEEES 195
           K KQVMGFD EEES
Sbjct: 181 KHKQVMGFDPEEES 192

[Close]

BLAST of CsaV3_2G019470 vs. NCBI nr
Match: XP_038890378.1 (floral homeotic protein FBP1-like [Benincasa hispida])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 150/192 (78.12%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLI NEKSRKTTF+KRKASLLRKAYELSTLCDVRVCV V+GPNQ NDQSP Q
Sbjct: 1   MGRGKLSMKLIGNEKSRKTTFYKRKASLLRKAYELSTLCDVRVCVFVYGPNQ-NDQSPFQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           +HTWPP  ++VNN+IASYKTNCL+KR  K+ GL+DFFSERKKK+ETDMSKLRKDV++ RF
Sbjct: 61  VHTWPPCREDVNNLIASYKTNCLHKRAHKACGLLDFFSERKKKIETDMSKLRKDVAKARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           P WDERLDHLLEDQLRVLMVELDSK+E+ K+ IE+ TEN  +++EGT +E S QTLN NM
Sbjct: 121 PKWDERLDHLLEDQLRVLMVELDSKLEMTKRMIEMVTEN--HIDEGT-LEESSQTLNTNM 180

Query: 181 KCKQVMGFDHEE 193
           K KQVM FDHEE
Sbjct: 181 KQKQVMSFDHEE 188

[Close]

BLAST of CsaV3_2G019470 vs. NCBI nr
Match: XP_022973845.1 (agamous-like MADS-box protein AGL103 [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-67
Identity = 140/191 (73.30%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRVCV+VHGPN  NDQSP +
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRVCVLVHGPNH-NDQSPFE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           L+TWPP  +EVNNMIASYK NCL+KR RK+F L+DFFSERKKK+E DMSKLRKDV E RF
Sbjct: 61  LNTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           P WDERLDHL EDQL++LMV+LDSK++  K+RIEI T+N+   EEGTS E++ QTL ANM
Sbjct: 121 PKWDERLDHLTEDQLQILMVKLDSKLDTMKRRIEIVTKNH---EEGTSGENN-QTLIANM 180

Query: 181 KCKQVMGFDHE 192
           K +QVM +  +
Sbjct: 181 KPEQVMSYGEQ 186

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-15
Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 6   LSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C++V+GP ++ D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  PSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDE 125
               +V  +I  YK + +    RK   +  F ++  K  E    K  K   E ++ SW+E
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSWEE 125

Query: 126 RLDHLLEDQLRVLMVELDSKIEIAKKRIE 155
           +LD    +QL  +   +DSK+  A  R E
Sbjct: 126 KLDKCSREQLHGIFCAVDSKLNEAVTRQE 151

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot
Match: Q9FJK3 (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC +  C +++ P  +N +    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS   V  +++ ++T     + +K      F  +R  K    + + RKD  E   
Sbjct: 61  --VW-PSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEM 120

Query: 121 PS-------WDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSG 180
                     +  + HL    L  L   ++  ++   +RIEI   +   + E +SV  + 
Sbjct: 121 TEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAA 180

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot
Match: Q9LSB2 (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 16  SRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMI 75
           SR T+  KR+ ++ +KA ELS LCD+ VCV+ +G N        +L TWP   ++V  + 
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSNG-------ELKTWPEEREKVKAIA 90

Query: 76  ASYKTNCLYKRVRKSFGLIDFFSERKK----KVETDMSKLRKDVSEERFPSWDERLDHLL 135
             Y      KR + S  L +F  +  K    K E    K+R+ V + ++P WD R D+  
Sbjct: 91  RRYGELSETKRRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRR-VPKVKYPVWDPRFDNYS 150

Query: 136 EDQLRVLMVELDSKI 147
            +QL  L+  L+  +
Sbjct: 151 VEQLMGLVQSLERNL 157

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot
Match: Q7XJK8 (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 5   KLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTW 64
           K+ + LI N  SRKTTF KRK  + +K  EL TLC V  C VV+ P  S  ++      W
Sbjct: 4   KMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEA------W 63

Query: 65  PPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKD-----VSEER 124
            PS + V ++++ +    +  R +K      F S+R  K +  + KLR +     + E  
Sbjct: 64  -PSREGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELM 123

Query: 125 FP--SWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATEN 160
           F     +  + +L    L+ L + +D  +    +RIEI  EN
Sbjct: 124 FGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIEN 158

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot
Match: Q9FIX0 (Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-08
Identity = 43/169 (25.44%), Postives = 75/169 (44.38%), Query Frame = 0


Query: 19  TTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMIASY 78
           T+   R  ++ +KA EL TLCD+  CV+ +GP+        +L TWPP  ++V ++   Y
Sbjct: 26  TSLSNRLETIFKKASELCTLCDIEACVIYYGPDG-------ELKTWPPEREKVEDIALRY 85

Query: 79  KTNCLYKRVRKSFGLIDFFSERKKKV----------ETDMSKLRKDVSEERFPSWDERLD 138
                  R +KS  L DF +++K K             D+    K+V+  ++P      D
Sbjct: 86  SQLNEALRRKKSVTLYDFLNKKKDKTNLEKKAKITDNDDLKTCLKNVNILKYP----LAD 145

Query: 139 HLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLN 178
           H   DQ+  L+  L+  +   ++RI       +   +      +  +LN
Sbjct: 146 HYSPDQVSQLIQSLEPHVSKVRERIRFVESQKHKETKPDHQSLASSSLN 183

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL
Match: A0A0A0LME6 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180

Query: 181 KCKQVMGFDHEEES 195
           KCKQVMGFDHEEES
Sbjct: 181 KCKQVMGFDHEEES 194

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL
Match: A0A5D3BUZ8 (MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00490 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 176/194 (90.72%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCV VHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPP  DEVN+MIASYKTNCL+KR RK+FGLIDFFSERKKKVETDMSKLRKDV+E RF
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
             WDERLDHLLEDQLRVLM+ELDSKIEIAKKRIEI TE  YNVEEGTSVESS QTLNANM
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANM 180

Query: 181 KCKQVMGFDHEEES 195
           K KQVMGFD EEES
Sbjct: 181 KHKQVMGFDPEEES 192

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL
Match: A0A1S3CDG6 (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 176/194 (90.72%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCV VHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPP  DEVN+MIASYKTNCL+KR RK+FGLIDFFSERKKKVETDMSKLRKDV+E RF
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
             WDERLDHLLEDQLRVLM+ELDSKIEIAKKRIEI TE  YNVEEGTSVESS QTLNANM
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANM 180

Query: 181 KCKQVMGFDHEEES 195
           K KQVMGFD EEES
Sbjct: 181 KHKQVMGFDPEEES 192

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL
Match: A0A6J1ICD8 (agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.8e-68
Identity = 140/191 (73.30%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRVCV+VHGPN  NDQSP +
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRVCVLVHGPNH-NDQSPFE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           L+TWPP  +EVNNMIASYK NCL+KR RK+F L+DFFSERKKK+E DMSKLRKDV E RF
Sbjct: 61  LNTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           P WDERLDHL EDQL++LMV+LDSK++  K+RIEI T+N+   EEGTS E++ QTL ANM
Sbjct: 121 PKWDERLDHLTEDQLQILMVKLDSKLDTMKRRIEIVTKNH---EEGTSGENN-QTLIANM 180

Query: 181 KCKQVMGFDHE 192
           K +QVM +  +
Sbjct: 181 KPEQVMSYGEQ 186

[Close]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL
Match: A0A6J1EVI5 (agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC111438359 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67
Identity = 140/191 (73.30%), Postives = 161/191 (84.29%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR CV V+GPN  NDQSP++
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNH-NDQSPVE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           L+TWPP  +EVNNMIASYK NCL+KR RK+F L+DFFSERKKK+E DMSKLRKDV E RF
Sbjct: 61  LNTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           P WDERLDHL EDQLR+LMV+LDSK++  K+RIEI TEN+   EEGTS E++ QTL ANM
Sbjct: 121 PKWDERLDHLTEDQLRILMVKLDSKLDTMKRRIEIVTENH---EEGTSGENN-QTLIANM 180

Query: 181 KCKQVMGFDHE 192
           K +QVM +  +
Sbjct: 181 KPEQVMSYGEQ 186

[Close]

BLAST of CsaV3_2G019470 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 49/152 (32.24%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGR  + M  I+NEK+R TT+ KRKA L +KA E STLC V  CV+V+GP+++ D+  ++
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              WP    +V  ++  Y+ +       K++ + +   +   KVE       K     ++
Sbjct: 61  PELWPKDGSKVREILTKYR-DTASSSCTKTYTVQECLEKNNTKVE-------KPTIATKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKR 153
           P+WD++LD    + L  + + +++KI+ A  R
Sbjct: 121 PTWDKKLDQCSLNDLYAVFMAVENKIQEATNR 144

[Close]

BLAST of CsaV3_2G019470 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-16
Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 6   LSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C++V+GP ++ D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  PSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDE 125
               +V  +I  YK + +    RK   +  F ++  K  E    K  K   E ++ SW+E
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSWEE 125

Query: 126 RLDHLLEDQLRVLMVELDSKIEIAKKRIE 155
           +LD    +QL  +   +DSK+  A  R E
Sbjct: 126 KLDKCSREQLHGIFCAVDSKLNEAVTRQE 151

[Close]

BLAST of CsaV3_2G019470 vs. TAIR 10
Match: AT5G26630.1 (MADS-box transcription factor family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-12
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ M  I NE +RK+TF KRK  LL+KA EL  LC V +  VV+ P + N +    
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS +  N +++ +KT  +  + +K      F  +R  K      KLRK+  E   
Sbjct: 61  --VW-PSREAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEM 120

Query: 121 P-------SWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENN 161
                   S    +  + + +LR     ++ +++   +RIEI   NN
Sbjct: 121 KNIMFDCLSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNN 160

[Close]

BLAST of CsaV3_2G019470 vs. TAIR 10
Match: AT5G48670.1 (AGAMOUS-like 80 )

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC +  C +++ P  +N +    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS   V  +++ ++T     + +K      F  +R  K    + + RKD  E   
Sbjct: 61  --VW-PSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEM 120

Query: 121 PS-------WDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSG 180
                     +  + HL    L  L   ++  ++   +RIEI   +   + E +SV  + 
Sbjct: 121 TEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAA 180

[Close]

BLAST of CsaV3_2G019470 vs. TAIR 10
Match: AT3G18650.1 (AGAMOUS-like 103 )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 16  SRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMI 75
           SR T+  KR+ ++ +KA ELS LCD+ VCV+ +G N        +L TWP   ++V  + 
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSNG-------ELKTWPEEREKVKAIA 90

Query: 76  ASYKTNCLYKRVRKSFGLIDFFSERKK----KVETDMSKLRKDVSEERFPSWDERLDHLL 135
             Y      KR + S  L +F  +  K    K E    K+R+ V + ++P WD R D+  
Sbjct: 91  RRYGELSETKRRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRR-VPKVKYPVWDPRFDNYS 150

Query: 136 EDQLRVLMVELDSKI 147
            +QL  L+  L+  +
Sbjct: 151 VEQLMGLVQSLERNL 157

The following BLAST results are available for this feature:

BLAST of CsaV3_2G019470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651989.1	8.1e-108	100.00	hypothetical protein Csa_016959 [Cucumis sativus]	[more]
XP_011650173.1	3.9e-102	100.00	floral homeotic protein DEFICIENS [Cucumis sativus]	[more]
XP_008460878.1	2.1e-87	90.72	PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box prot...	[more]
XP_038890378.1	1.1e-75	78.13	floral homeotic protein FBP1-like [Benincasa hispida]	[more]
XP_022973845.1	1.4e-67	73.30	agamous-like MADS-box protein AGL103 [Cucurbita maxima]	[more]

BLAST of CsaV3_2G019470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	4.9e-15	34.90	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
Q9FJK3	1.4e-09	27.27	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
Q9LSB2	2.4e-09	32.59	Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 P...	[more]
Q7XJK8	2.0e-08	30.86	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P...	[more]
Q9FIX0	4.4e-08	25.44	Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=...	[more]

BLAST of CsaV3_2G019470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LME6	1.9e-102	100.00	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE...	[more]
A0A5D3BUZ8	1.0e-87	90.72	MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CDG6	1.0e-87	90.72	MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1	[more]
A0A6J1ICD8	6.8e-68	73.30	agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387...	[more]
A0A6J1EVI5	1.5e-67	73.30	agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]

BLAST of CsaV3_2G019470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55690.1	1.4e-17	32.24	MADS-box transcription factor family protein	[more]
AT5G58890.1	3.5e-16	34.90	AGAMOUS-like 82	[more]
AT5G26630.1	3.1e-12	30.54	MADS-box transcription factor family protein	[more]
AT5G48670.1	9.8e-11	27.27	AGAMOUS-like 80	[more]
AT3G18650.1	1.7e-10	32.59	AGAMOUS-like 103	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..159
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..184
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..184
None	No IPR available	CDD	cd00120	MADS	coord: 2..67 e-value: 1.01737E-21 score: 82.1765
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 43.61 coord: 38..59 score: 21.36 coord: 23..38 score: 62.47
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 8.2E-19 score: 78.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 e-value: 4.9E-18 score: 64.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 19.553497
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..105 e-value: 1.1E-16 score: 62.6
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G019470.1	CsaV3_2G019470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity