CsaV3_2G017420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G017420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 14506917 .. 14507302 (+)
RNA-Seq Expression	CsaV3_2G017420
Synteny	CsaV3_2G017420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTTAGACAACATCGAAAAAAGGAATTGTCGACACTTTATTACAAGTGTCGGCAGTTGTGGGATAACTCCTGACGCTTTTTAGGCAGCGTCAGGAGTTTTCCTTCAAAAACCCTTACTTCCTCATGTGCCATTGTTTTCGTTTCTCCACATCGCAAAATGTCATCCTCTTCTTCTTCATCCCTCTTTAATTTTCCTCCTTTTTCCTCATCTCAATCTTCGTCTCTTCAAAGAAGCAGTAGTAGCATCTAGAAATCAAAGGCTAAGCAGTGTCGTCGTGAGGTGGAAGACCAACTCTAGGAAGCTATTGAGGAGCTTCAACAACGGCAGGAAAGAGTTAGCGGCGTGTGGATTTCATCATCATCAGACTCAAGAACAGCTAT

mRNA sequence

CGCTTTTTAGGCAGCGTCAGGAGTTTTCCTTCAAAAACCCTTACTTCCTCATGTGCCATTGTTTTCGTTTCTCCACATCGCAAAATGTCATCCTCTTCTTCTTCATCCCTCTTTAATTTTCCTCCTTTTTCCTCATCTCAATCTTCGTCTCTTCAAAGAAGCAGTAGTAGCATCTAG

Coding sequence (CDS)

CGCTTTTTAGGCAGCGTCAGGAGTTTTCCTTCAAAAACCCTTACTTCCTCATGTGCCATTGTTTTCGTTTCTCCACATCGCAAAATGTCATCCTCTTCTTCTTCATCCCTCTTTAATTTTCCTCCTTTTTCCTCATCTCAATCTTCGTCTCTTCAAAGAAGCAGTAGTAGCATCTAG

Protein sequence

RFLGSVRSFPSKTLTSSCAIVFVSPHRKMSSSSSSSLFNFPPFSSSQSSSLQRSSSSI*

Homology

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BLAST of CsaV3_2G017420 vs. NCBI nr
Match: KAE8651949.1 (hypothetical protein Csa_023619, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  RFLGSVRSFPSKTLTSSCAIVFVSPHRKMSSSSSSSLFNFPPFSSSQSSSLQRSSSSI 59
          RFLGSVRSFPSKTLTSSCAIVFVSPHRKMSSSSSSSLFNFPPFSSSQSSSLQRSSSSI
Sbjct: 1  RFLGSVRSFPSKTLTSSCAIVFVSPHRKMSSSSSSSLFNFPPFSSSQSSSLQRSSSSI 58

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651949.1	1.7e-18	100.00	hypothetical protein Csa_023619, partial [Cucumis sativus]	[more]

BLAST of CsaV3_2G017420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017420.1	CsaV3_2G017420.1	mRNA