CsaV3_2G017120 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G017120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Branched-chain amino acid aminotransferase
Location	chr2: 14321628 .. 14324782 (-)
RNA-Seq Expression	CsaV3_2G017120
Synteny	CsaV3_2G017120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTAATGGGCGGTTGGGAATAAATCAAAGCAATTAAATATGTAATTAAGTCTAAAACCATATCCTCACACATAGTGTTTGACAATTTTTAGAAGAAACTAGAAAAGAAAAAGAAGGGAATACTTGAGCATTGGAAAATCGACGATATTCCCAAAGCTTTTTTCCTTTGTTAAATTGCTTTTGAAAGTTGATTAGCCTTTAGAACACAAAAAGAAGAGAGAGAGAGAGATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTATGCTGCTATATGAACTAAACTTGTTCGAATAACATGATCTTTTTTGGAATGAAATCTGGGGTTTAGAAACATTTGCATAATTTGTTTTTGGAGTTCTTCTTTTCTTCTTGCTTGTTGTTCTTTGAGATTAATTGGATATATAGATGAGGGATTTGAGGAAGGATTGTTAACAAAGTTTGAGGATTTGATAAAATTGGTTATTATGTGGAGACGATATCTTGAGATCTCAAATACAATGTTTAACAATTCAAATGTTTATTTAAACAAAAATGGAAACCATGAATTAAAAATGGTGAGAAAAACAAATTAAATTATCATCTGCACAAAATCTATGAATTTAAAAACTAATTGTTCACAAAATAAATTTAATTCTCCTCGTGGTAATAAGTTTGATTAATTTTGTTAGATTTGTAACTAATGTTTTATTATTTCTTTAAAGAATGATACAAACAAATATATATATATATATATATATATATGTATATAATTCTGATGAATAGTTGCTATCATTTAAAACTGTTTAGAGAGATTTGATGATGGAAGAGACGGATAGTAAAGTTGTAAAAATATATGAATTTTCGTAGGCAGTGAAAGTTGGAGTTGATTTGTGCAGGTAAGACAGTTAAGTAGGACACTATGGGAGTAAGCCAAACTACAACTATTACTACCTCTCTTCACTTGTCAAGGTTGTCACTTCAAATATTTCATATACTATTATTATTCCATAAATAACGAAGGGCTTTGTAAAGGATGCAATCGTGTCCAATTCTAAATCAATCAAAAAAAAAAAAAAAAACTTTGAGTCATGTGTGTTCTAATTGTTTAAACTTCTCTCTCCCTCTCTCTCTATATATATATATATGAATGCAATGCATATCAATACTTAGCAATAACATAATATAAGATTAATTAGACATTATTTGGGTGTTGAATTCACTCACTAAGGACTTGGAAGACGGAAAATGGTGACGAGGAAATGAACTTTAGGGGTTTTGTTCATTAATTCAAACACACAAATATCCCCTTCTTCCAATTCATTATCAACCGCGAATCTCTTCCAACCGCCTTTCAGCTCCGTTCGCCGCCGTGTGAACGCCCACCGGACTCCGCACCATACTTTCCAAATCCGACCATCTCCCACCTCCAGCTTCACATCCACCGATTCCTTTATATATCTCTCTGAAAAGATCCTTGGCAAGCTCTGCAGATTAATTAATCACACATTCATCAACGATGACTATTCTCAAATCACCCATCCATCCATTCAAGTCTTGTTGTTGTTCTGTTCTGTTCTTACCAGACAATTTCCTGTTTGGATGTACGAAGGCCTCATTGTAACCATGAATGAAGGGTTCTTCGTTCTACATTTGAACGAACTCGCTCTCCTCACAACTACCAATTGATTCTCTGTTAATACCTGCTGCGTCTTCCGTGGATTCATCGGTCTCATCGATTCCGGACTGGATCTGCCGTCTTCTCTCTCGTTGTACTCTGAAATCGGTAAGTGTTCATCAGACTATAGTACTGATTGCTGAAATTCAAATGAAAGTTTAGAGAAATTAAGTGGAAAAATTAACCTGATGCTCTGTAATTAGTTTGTCTCGGTGAGTAGTCCGTTTCCAGATCTTCATCTTCATCGTCATCGCTGAATCCTTGAGGTGTAGTGAACTCTCGACGCTTCATTATCTTAATCTTCATATTCTTCTTCATCTCCCGCAAGGAGTAATACGCGGATGTTTCTTTCTCTTTCTTCTCCATTCTTCTTCTCTTCTTCAAAACCTCCTCATGTAGTATCTGGATAGATTCACCTTCATCATCGCTTTCGCTTTTAGGAACGATTACCGGCAGTCGACGCATTGGATAATCGATTTCGGTAGCGGAAGTATCGAAAATAAGAACATTGAAACAACAAATTCCTTTCAACTGGAACACGAGGAAATATCCAGGTTGAACGGCATAAAAGTTTACAAACTCCGGCCATCCTCTGAGGAAACATATTTTGCCGTCTAGTCTCGTGAGTTGGAAGTTCCATTTAGAGCCGTCGGGAAGGGAAAGAGTGGCGTTGTTGAATAACAGAGAATGGGCATTGTTCTTGACGAACTTGTTTGGAAGATCCTGTTGAAGAAGAAGAAAAAAAAAAAGAGTAATTAGAGAATGTGATTTGAAAAATTTGTTGGTTTGATTAGTACTTACAAGTTTTTGTTGGGTGAGATTTTGATGAAGAACGATCTTGAAGAAATGGGGATTTGGAGAAGTGAACAAACCCATTTACAAATATATTTCTTGAGCTCTTTCTCTCCAATGGGTTTGAATTTAAATACAAAATCAATGAACTTTCAAAACTTTTTAGAAAAAAACTCATGCAAATGTGTTAACAATGATAGTGTGTTGAAGAAAGACTCATAAGGAAAGTATGTGGCCAAATTCATCCAAGGCAGATGAATTTTTCAAATTCATAATATTCTGATAATTATTAAATAAGTTTGCATAACGTTATGATTATTTCCCATATGTTCTTTAGTTTGTTATAAACATGACAAACAAGCAAAATAGTATAAGAATGGTGAAATGAAAGGGGAGTAGAGTTATTATTCCAAGTCTTGTGTATTCTCTCCATTGTTCTTTTCTTCTTCCATAGTTTTCACAATCACATCACCATGTTCATCTCTTAAATGGATCCTTTGGAACCATTCTCTTTCAATAATAATATTGAAAACTA

mRNA sequence

ATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTAAGACAGTTAAGTAG

Coding sequence (CDS)

ATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTAAGACAGTTAAGTAG

Protein sequence

MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPVQPSSVSTGKTVK*

Homology

[Close]

BLAST of CsaV3_2G017120 vs. NCBI nr
Match: KGN62035.1 (hypothetical protein Csa_006238 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 7.8e-37
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60

Query: 61 QPSSVSTGKTVK 73
          QPSSVSTGKTVK
Sbjct: 61 QPSSVSTGKTVK 72

[Close]

BLAST of CsaV3_2G017120 vs. NCBI nr
Match: KAA0045848.1 (hypothetical protein E6C27_scaffold243G003810 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.8e-24
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 3  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPVQP 62
          MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHC+C PWPGVVVPPEDVP   KPS  VQ 
Sbjct: 1  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCHCRPWPGVVVPPEDVPG-LKPSN-VQS 60

Query: 63 SSVST 68
          SSVST
Sbjct: 61 SSVST 63

[Close]

BLAST of CsaV3_2G017120 vs. NCBI nr
Match: KAG7035219.1 (hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPP-EDVPD--TTKPS 60
          MC LV CK C+K +WKGCG HLP LY  +EKGKHC C PWPGVVV P +D  D  T  PS
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 QPVQPSSVSTGKTV 72
               SSV  GKT+
Sbjct: 61 MANSKSSVPKGKTI 74

[Close]

BLAST of CsaV3_2G017120 vs. NCBI nr
Match: KAG6605256.1 (hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPP-EDVPD--TTKPS 60
          MC LV CK C+K +WKGCG HLP LY  +EKGKHC C PWPGVVV P +D  D  T  PS
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 QPVQPSSVSTGKTV 72
               SSV  GKT+
Sbjct: 61 MANSKSSVPEGKTI 74

[Close]

BLAST of CsaV3_2G017120 vs. NCBI nr
Match: KAF7809773.1 (Phototropic-responsive NPH3 family protein isoform 1 [Senna tora])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KYTW GCG+HL  LY S+++GKHC C  WPGVV+P +    T+ P QP+
Sbjct: 1  MCFRVECKSCGKYTWAGCGKHLKALYSSIDEGKHCMCRSWPGVVIPNQPPAATSTPQQPI 60

Query: 61 QPSSVSTG 69
          Q  S   G
Sbjct: 61 QSGSGPQG 68

[Close]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL
Match: A0A0A0LJK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.8e-37
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60

Query: 61 QPSSVSTGKTVK 73
          QPSSVSTGKTVK
Sbjct: 61 QPSSVSTGKTVK 72

[Close]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL
Match: A0A5A7TSL2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003810 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 3  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPVQP 62
          MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHC+C PWPGVVVPPEDVP   KPS  VQ 
Sbjct: 1  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCHCRPWPGVVVPPEDVPG-LKPSN-VQS 60

Query: 63 SSVST 68
          SSVST
Sbjct: 61 SSVST 63

[Close]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL
Match: A0A2C9UV86 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097400 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC+ V CK C KY+W GCG+HL  +Y S++KGKHC C PWPGV++P E  P TT+P    
Sbjct: 1  MCIRVDCKQCGKYSWSGCGKHLATIYGSIDKGKHCMCRPWPGVIIPTEKKP-TTQPPPKT 60

Query: 61 QPSSVST 68
            S+ +T
Sbjct: 61 STSTTTT 66

[Close]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL
Match: A0A0L9UR73 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g038300 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V C+ C +YTW GCG HL  LY S+++G HC C  WPGVV+PP      T+  QP 
Sbjct: 1  MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIPPRSTDTATQ--QPT 60

Query: 61 QPSSVSTGK 70
          QP++ S GK
Sbjct: 61 QPNNSSQGK 67

[Close]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL
Match: A0A3N7EY41 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G130750 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KY+W+GCG HL  LY S++KGKHC C  WPGVVVP E+      PS  V
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQTPSGVV 60

Query: 61 QPSSVSTGKT 71
            S+ +T  T
Sbjct: 61 STSATTTAVT 70

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62035.1	7.8e-37	100.00	hypothetical protein Csa_006238 [Cucumis sativus]	[more]
KAA0045848.1	5.8e-24	87.69	hypothetical protein E6C27_scaffold243G003810 [Cucumis melo var. makuwa]	[more]
KAG7035219.1	1.7e-15	59.46	hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605256.1	1.7e-15	59.46	hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF7809773.1	1.4e-14	52.94	Phototropic-responsive NPH3 family protein isoform 1 [Senna tora]	[more]

BLAST of CsaV3_2G017120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK5	3.8e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1	[more]
A0A5A7TSL2	2.8e-24	87.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2C9UV86	5.9e-14	52.24	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097400 PE=4 SV=...	[more]
A0A0L9UR73	1.0e-13	50.72	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g038300 PE...	[more]
A0A3N7EY41	1.0e-13	52.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G130750 PE=4 ...	[more]

BLAST of CsaV3_2G017120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..72
None	No IPR available	PANTHER	PTHR34724:SF2	OS12G0596101 PROTEIN	coord: 1..61
None	No IPR available	PANTHER	PTHR34724	OS12G0596101 PROTEIN	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017120.1	CsaV3_2G017120.1	mRNA