CsaV3_2G016620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G016620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Mads box protein
Location	chr2: 13847714 .. 13848277 (-)
RNA-Seq Expression	CsaV3_2G016620
Synteny	CsaV3_2G016620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTTTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTTGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGTTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTATTTGA

mRNA sequence

ATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTTTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTTGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGTTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTATTTGA

Coding sequence (CDS)

ATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTTTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTTGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGTTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTATTTGA

Protein sequence

MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTFGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEIDDLFYFSI*

Homology

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BLAST of CsaV3_2G016620 vs. NCBI nr
Match: XP_004149713.1 (agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN61964.1 hypothetical protein Csa_006560 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 6.0e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180
           WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180

Query: 181 DLFYFSI 188
           DLFYFSI
Sbjct: 181 DLFYFSI 187

[Close]

BLAST of CsaV3_2G016620 vs. NCBI nr
Match: XP_008457781.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0045787.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CsaV3_2G016620 vs. NCBI nr
Match: TYJ99494.1 (aspartic proteinase CDR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CsaV3_2G016620 vs. NCBI nr
Match: XP_038902722.1 (agamous-like MADS-box protein AGL62 [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 6.2e-70
Identity = 151/202 (74.75%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGRQKIEIKKL VKSR+QVTFSKRRAGLFNKAAELSIL GAEIAILVFS T KIYT
Sbjct: 1   MKKSLGRQKIEIKKLEVKSRQQVTFSKRRAGLFNKAAELSILCGAEIAILVFSPTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRA---ERMRKT 120
           FGHPNVD L+DR LT+NF PPKP E+YLPL ELNRD  D  AEFE EKRRA   ERMR +
Sbjct: 61  FGHPNVDLLLDRSLTANFAPPKPAESYLPLAELNRDFDDAMAEFEIEKRRAAEVERMRSS 120

Query: 121 GGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFH------ 180
           GGFWWDE +ECMGIEDLKRFRSSL+ELRGKVAERVE+LAAVRN G L  + SFH      
Sbjct: 121 GGFWWDEPVECMGIEDLKRFRSSLVELRGKVAERVEKLAAVRNGGLLMPAASFHLTGNLQ 180

Query: 181 -------HL----SVATEIDDL 183
                  HL    SVATEI+DL
Sbjct: 181 CAPLPPFHLAGNHSVATEIEDL 202

[Close]

BLAST of CsaV3_2G016620 vs. NCBI nr
Match: KAG7011020.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV S+T+K+YT
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSATNKLYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNV+ L+DRFLT N  PPKP EAYLPL+ELNRD  DV AEF+ EKRRA        F
Sbjct: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERSSNDRF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQG 163
           WWDE +E M I++LKRFRSSL+ELRGKVAERVE+   +R +G
Sbjct: 121 WWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTDMRTEG 162

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-27
Identity = 71/183 (38.80%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KKS GRQKIE+ K+  +S  QVTFSKRR+GLF KA+EL  L GAE+AI+VFS   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDFLIDRFLTSNFVPP--------KPVEAYLPLEELNRDLKDVTAEFETEKRRAE 120
           FGHPNVD +IDRF+ +N +PP        +       +++LN  L  V ++ ETEK++ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 RMRKTG------GFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTT 170
            ++K        G WW++ +E + +  L+ F+ +L  L+  V              F   
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFFQANVPNFYVG 181

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-22
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K+S+GRQKI + K+  +S RQVTFSKRRAGLF KA+EL  L GAEI I+VFS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDFLIDRFLTSN---FVPPKPVEAYLPLE-ELNRDLKDVTAEFETEKR-------- 121
           GHP+V+ ++DR+++ N       + ++       ELN  L  + +E E EK+        
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGF 164
           R E +R++   WW++ +E M +  L+  + +L ELR  V   +      ++  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVF 232

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-20
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 0


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           +K+LGR+KIE+ K+  +S  QVTFSKRR+GLF K +EL  L  AEIAI+VFS + K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVDFLIDRFL-------TSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR----- 121
           GHPNV+ L+D  L        +NF   +     L ++ LN  L +V AE E E+      
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESR---TKLRIQMLNESLTEVMAEKEKEQETKQSI 122

Query: 122 -RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSP 170
            + ER  K    WW  +   + +      +  L  L+ +V E+V +L   RN  F   S 
Sbjct: 123 VQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHH-RNLNFYVGSS 179

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-19
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KK+LGR+K+EI K+  +S  QVTFSKR+AGLF KA+E   L  A+IA++VFS   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDFLIDRF----LTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR------R 120
           FGHPNVD L+D F    +  N          L ++ LN+   +V AE E E++      +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 AERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPS 170
            ER  +    WW ++   + +         L +L+  V E+  +L    N  F   S S
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSS 180

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 55/162 (33.95%), Postives = 93/162 (57.41%), Query Frame = 0


Query: 5   LGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTFGHP 64
           +GR+KI+++ +   + RQVTFSKRR GLF KA+EL+ L  AE+ I+VFS   K +++G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 65  NVDFLIDRFL----TSNFVPPKPVEAYLP-LEELNRDLKDVTAEFETEKRRA----ERMR 124
           N+D + +RF+     S+    +    Y P L+ L+  L  +  E E EK R     E++ 
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 125 KTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAA 158
             G   + E++E + +++L  ++  L  + G++  +V  L A
Sbjct: 121 SAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL
Match: A0A0A0LLS2 (Mads box protein OS=Cucumis sativus OX=3659 GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180
           WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180

Query: 181 DLFYFSI 188
           DLFYFSI
Sbjct: 181 DLFYFSI 187

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL
Match: A0A5D3BKF4 (Aspartic proteinase CDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00600 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.4e-77
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL
Match: A0A5A7TV93 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003090 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.4e-77
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL
Match: A0A1S3C5V9 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103497390 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.4e-77
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL
Match: A0A6J1FUA9 (agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC111448852 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.2e-56
Identity = 116/162 (71.60%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV SS +K+YT
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNV+ L+DRFLT N  PPKP EAYLPLEELNRD  DV AE++ EKRR         F
Sbjct: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLEELNRDFDDVAAEYDIEKRRTAERLSNDRF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQG 163
           WWDE +E M I+DLKRFRSSL++LRGKVAERVE+  A+R +G
Sbjct: 121 WWDEPLESMKIDDLKRFRSSLVDLRGKVAERVEKFTAMRKEG 162

[Close]

BLAST of CsaV3_2G016620 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 122.9 bits (307), Expect = 2.8e-28
Identity = 71/183 (38.80%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KKS GRQKIE+ K+  +S  QVTFSKRR+GLF KA+EL  L GAE+AI+VFS   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDFLIDRFLTSNFVPP--------KPVEAYLPLEELNRDLKDVTAEFETEKRRAE 120
           FGHPNVD +IDRF+ +N +PP        +       +++LN  L  V ++ ETEK++ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 RMRKTG------GFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTT 170
            ++K        G WW++ +E + +  L+ F+ +L  L+  V              F   
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFFQANVPNFYVG 181

[Close]

BLAST of CsaV3_2G016620 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-23
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K+S+GRQKI + K+  +S RQVTFSKRRAGLF KA+EL  L GAEI I+VFS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDFLIDRFLTSN---FVPPKPVEAYLPLE-ELNRDLKDVTAEFETEKR-------- 121
           GHP+V+ ++DR+++ N       + ++       ELN  L  + +E E EK+        
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGF 164
           R E +R++   WW++ +E M +  L+  + +L ELR  V   +      ++  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVF 232

[Close]

BLAST of CsaV3_2G016620 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 0


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           +K+LGR+KIE+ K+  +S  QVTFSKRR+GLF K +EL  L  AEIAI+VFS + K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVDFLIDRFL-------TSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR----- 121
           GHPNV+ L+D  L        +NF   +     L ++ LN  L +V AE E E+      
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESR---TKLRIQMLNESLTEVMAEKEKEQETKQSI 122

Query: 122 -RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSP 170
            + ER  K    WW  +   + +      +  L  L+ +V E+V +L   RN  F   S 
Sbjct: 123 VQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHH-RNLNFYVGSS 179

[Close]

BLAST of CsaV3_2G016620 vs. TAIR 10
Match: AT1G17310.1 (MADS-box transcription factor family protein )

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-21
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K + GRQKIEIKK+  +++RQVTFSKRR GLF K+AELS+L+GA+IA++ FS  D+IY F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGFW 121
           GH  VD LID++L  +   P  +E Y           D  A+ E+ +            W
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY---------SGDNAADEESRRP-----------W 163

Query: 122 WDEAMECMGIEDLKRFRSSLMELRGKVAERV 153
           W+  +E +  E+L+ + ++L  LR  + +++
Sbjct: 164 WERPVESVPEEELEEYMAALSMLRENIGKKI 169

[Close]

BLAST of CsaV3_2G016620 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-20
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = 0


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KK+LGR+K+EI K+  +S  QVTFSKR+AGLF KA+E   L  A+IA++VFS   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDFLIDRF----LTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR------R 120
           FGHPNVD L+D F    +  N          L ++ LN+   +V AE E E++      +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 AERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPS 170
            ER  +    WW ++   + +         L +L+  V E+  +L    N  F   S S
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSS 180

The following BLAST results are available for this feature:

BLAST of CsaV3_2G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149713.1	6.0e-97	100.00	agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN61964.1 hypothetical p...	[more]
XP_008457781.1	1.5e-76	87.98	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0045787.1 agam...	[more]
TYJ99494.1	1.5e-76	87.98	aspartic proteinase CDR1-like [Cucumis melo var. makuwa]	[more]
XP_038902722.1	6.2e-70	74.75	agamous-like MADS-box protein AGL62 [Benincasa hispida]	[more]
KAG7011020.1	1.1e-55	71.60	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of CsaV3_2G016620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	4.0e-27	38.80	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	5.0e-22	37.93	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	4.7e-20	38.67	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O80807	3.0e-19	35.75	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
O64703	3.1e-16	33.95	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]

BLAST of CsaV3_2G016620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLS2	2.9e-97	100.00	Mads box protein OS=Cucumis sativus OX=3659 GN=Csa_2G277060 PE=4 SV=1	[more]
A0A5D3BKF4	7.4e-77	87.98	Aspartic proteinase CDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TV93	7.4e-77	87.98	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3C5V9	7.4e-77	87.98	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103497390 PE=4...	[more]
A0A6J1FUA9	7.2e-56	71.60	agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC11144885...	[more]

BLAST of CsaV3_2G016620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	2.8e-28	38.80	AGAMOUS-like 62	[more]
AT2G24840.1	3.6e-23	37.93	AGAMOUS-like 61	[more]
AT1G01530.1	3.3e-21	38.67	AGAMOUS-like 28	[more]
AT1G17310.1	7.4e-21	39.74	MADS-box transcription factor family protein	[more]
AT1G65360.1	2.2e-20	35.75	AGAMOUS-like 23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..117
None	No IPR available	PANTHER	PTHR11945:SF618	AGAMOUS-LIKE MADS-BOX PROTEIN AGL61	coord: 5..156
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 5..156
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 42..63 score: 36.72 coord: 27..42 score: 65.84 coord: 7..27 score: 51.63
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 5..64 e-value: 1.4E-28 score: 111.0
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 18..61 e-value: 1.2E-20 score: 72.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 5..65 score: 25.314814
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 18..80 e-value: 7.6E-25 score: 88.6
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G016620.1	CsaV3_2G016620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity