CsaV3_2G016360 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAATGGGTGCGGTCATGTAAGTGTTCTTCGCAATTTTACATCCCTTCCTTTTACCCTTTATCAATTAATCAATCAATTTAGAGATTTGATCTATTGATTTTGACGTTCGAATTGCTATCTACCTATCATTGATTGATTGAATTTGAAATTTGATTCAATAATTTTGTTATCTTCCCTCTCAATTCTTGTTTCTCCATTTTGGATGGGTTCAGTTTGCTTCTCTGTCTATTGTAATAAGAATTTCGTTATTGAATATAACAATAATGTGTGCAAAAACTGAAGAATGTTGAAAGGTTTGAAGTTCTTGGGTTTAGTTAGGGAAGATTTCTAATTTACTTACAGTGTCTCAAGTTTTGTTAATGCAAGATGTTTATGAAGGCTGGAAAACAACGAAATTTTATATTTGTGAAGTTTTTACAGAAAGGGGTTCTGTTCATATTCGACTTTCTATAGGTTGTAGCATTAGTTGTTTATGAATTAATATTGTTTTCCATTTTGGTGATAAGCTCTGTGTTTCAACAATTCATTCTTGGAAGTTTTGCACAGTGTTTTTAAGCTCTTGATGAGTTTTGGGCCGAAAGTAAAACCATTGATTCAGAATGGAAAATTACTTGACAAGTTGATTAGACTGTAATATATTTGTTGCTTGCAGCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAGCATAGGTCAGGATTCGGGATAGTCATGCTTAGCAACATGGATATGTAGAGCTAGGAGAAATATGTTTTCGATGAAACAATCATTGAATATGTATAATCTTGCATGGATATTTATGCATAAAACACCCAAGAATTTGCAAAGGTTATCTTCTTTTACTTGGGACACCATGTGGATTATCTACAAAAAAGAATGGTCCAATAGGAACCAACAAGGCCTTCCCTTTTGGCTAAACCACTAAAAGGTATGTTCGGTTGTAATTTTGACAATGTTAAACTTAAATTCACTTTTTTCACTGCCAAAGTCATTTCAAACAGCTCTTTTCACCGTGATCTCTATCTCTTGTTCTCGTGATCGCTTTCCTCATTTTCAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA ATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA ATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVVLGNFRWS* Homology
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAE8651909.1 (hypothetical protein Csa_006142 [Cucumis sativus]) HSP 1 Score: 136.3 bits (342), Expect = 9.5e-29 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAA0045764.1 (hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ99518.1 hypothetical protein E5676_scaffold123G00850 [Cucumis melo var. makuwa]) HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12 Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: XP_022149438.1 (uncharacterized protein LOC111017867 [Momordica charantia]) HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11 Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: PNT26302.1 (hypothetical protein POPTR_007G006700 [Populus trichocarpa]) HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10 Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAG5241053.1 (Transmembrane protein [Salix suchowensis]) HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10 Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A5D3BMY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00850 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13 Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A0A0LPX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13 Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A6J1D6S8 (uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017867 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11 Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: U5GB04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 9.7e-11 Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: D6CH05 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0988g00020 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016360 vs. TAIR 10
Match: AT5G65880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 7.3e-11 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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