CsaV3_2G016360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G016360
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein
Locationchr2: 13648610 .. 13649845 (-)
RNA-Seq ExpressionCsaV3_2G016360
SyntenyCsaV3_2G016360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGGGTGCGGTCATGTAAGTGTTCTTCGCAATTTTACATCCCTTCCTTTTACCCTTTATCAATTAATCAATCAATTTAGAGATTTGATCTATTGATTTTGACGTTCGAATTGCTATCTACCTATCATTGATTGATTGAATTTGAAATTTGATTCAATAATTTTGTTATCTTCCCTCTCAATTCTTGTTTCTCCATTTTGGATGGGTTCAGTTTGCTTCTCTGTCTATTGTAATAAGAATTTCGTTATTGAATATAACAATAATGTGTGCAAAAACTGAAGAATGTTGAAAGGTTTGAAGTTCTTGGGTTTAGTTAGGGAAGATTTCTAATTTACTTACAGTGTCTCAAGTTTTGTTAATGCAAGATGTTTATGAAGGCTGGAAAACAACGAAATTTTATATTTGTGAAGTTTTTACAGAAAGGGGTTCTGTTCATATTCGACTTTCTATAGGTTGTAGCATTAGTTGTTTATGAATTAATATTGTTTTCCATTTTGGTGATAAGCTCTGTGTTTCAACAATTCATTCTTGGAAGTTTTGCACAGTGTTTTTAAGCTCTTGATGAGTTTTGGGCCGAAAGTAAAACCATTGATTCAGAATGGAAAATTACTTGACAAGTTGATTAGACTGTAATATATTTGTTGCTTGCAGCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAGCATAGGTCAGGATTCGGGATAGTCATGCTTAGCAACATGGATATGTAGAGCTAGGAGAAATATGTTTTCGATGAAACAATCATTGAATATGTATAATCTTGCATGGATATTTATGCATAAAACACCCAAGAATTTGCAAAGGTTATCTTCTTTTACTTGGGACACCATGTGGATTATCTACAAAAAAGAATGGTCCAATAGGAACCAACAAGGCCTTCCCTTTTGGCTAAACCACTAAAAGGTATGTTCGGTTGTAATTTTGACAATGTTAAACTTAAATTCACTTTTTTCACTGCCAAAGTCATTTCAAACAGCTCTTTTCACCGTGATCTCTATCTCTTGTTCTCGTGATCGCTTTCCTCATTTTCAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

mRNA sequence

ATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

Coding sequence (CDS)

ATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

Protein sequence

MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVVLGNFRWS*
Homology
BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAE8651909.1 (hypothetical protein Csa_006142 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 9.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVV 60
          MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVV
Sbjct: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVV 60

Query: 61 LGNFRWS 68
          LGNFRWS
Sbjct: 61 LGNFRWS 67

BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAA0045764.1 (hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ99518.1 hypothetical protein E5676_scaffold123G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 41
          MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG+
Sbjct: 12 MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGT 51

BLAST of CsaV3_2G016360 vs. NCBI nr
Match: XP_022149438.1 (uncharacterized protein LOC111017867 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 41
          MV+GAVIIGVVSGKAIFGPPLDEYWKKKLEEEA AK+TG+
Sbjct: 12 MVIGAVIIGVVSGKAIFGPPLDEYWKKKLEEEATAKKTGT 51

BLAST of CsaV3_2G016360 vs. NCBI nr
Match: PNT26302.1 (hypothetical protein POPTR_007G006700 [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 39
          +V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 12 LVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKET 49

BLAST of CsaV3_2G016360 vs. NCBI nr
Match: KAG5241053.1 (Transmembrane protein [Salix suchowensis])

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 39
          +V+GAVIIGVVSGKAIFGPPLDEYWK+KLEEEAAAKET
Sbjct: 12 LVIGAVIIGVVSGKAIFGPPLDEYWKRKLEEEAAAKET 49

BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A5D3BMY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00850 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 41
          MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG+
Sbjct: 12 MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGT 51

BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A0A0LPX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 41
          MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG+
Sbjct: 12 MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGT 51

BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: A0A6J1D6S8 (uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017867 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 41
          MV+GAVIIGVVSGKAIFGPPLDEYWKKKLEEEA AK+TG+
Sbjct: 12 MVIGAVIIGVVSGKAIFGPPLDEYWKKKLEEEATAKKTGT 51

BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: U5GB04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.7e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 39
          +V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 12 LVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKET 49

BLAST of CsaV3_2G016360 vs. ExPASy TrEMBL
Match: D6CH05 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0988g00020 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 39
          +V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 12 LVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKET 49

BLAST of CsaV3_2G016360 vs. TAIR 10
Match: AT5G65880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 7.3e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAA--AKE 38
          MV+GAV+IGVVSGKAIFGPPLD+YWK+KLE E A  AKE
Sbjct: 12 MVIGAVVIGVVSGKAIFGPPLDQYWKEKLEREEAVVAKE 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651909.19.5e-29100.00hypothetical protein Csa_006142 [Cucumis sativus][more]
KAA0045764.11.6e-1297.50hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ995... [more]
XP_022149438.14.0e-1190.00uncharacterized protein LOC111017867 [Momordica charantia][more]
PNT26302.12.0e-1092.11hypothetical protein POPTR_007G006700 [Populus trichocarpa][more]
KAG5241053.12.0e-1092.11Transmembrane protein [Salix suchowensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BMY97.9e-1397.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LPX17.9e-1397.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1[more]
A0A6J1D6S82.0e-1190.00uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
U5GB049.7e-1192.11Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 ... [more]
D6CH051.3e-1089.47Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0988g00020 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G65880.17.3e-1179.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36815BNAC03G48760D PROTEINcoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G016360.1CsaV3_2G016360.1mRNA