CsaV3_2G014310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 11949181 .. 11949417 (+)
RNA-Seq ExpressionCsaV3_2G014310
SyntenyCsaV3_2G014310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTATTACTCCTCGTCATGTCGGGGCTCGTAGACCTATGGACTTCTGAGCAGGCTAAACTCCGCCACGAGGGTGGCTCCTCCCCCGCCGCTCCCACCGTTGATGTGGCTGAACAAGGAAGATGGAACTCCACTGAGTTAACTCGAGTTTGGGACCGAGTAAGACGACTCGGTATGAATGGGAAGATGTGTTCTGAAGCTTCTGTTTGTATGTTGGTTGAATTTATGAGTCCATAG

mRNA sequence

ATTCTATTACTCCTCGTCATGTCGGGGCTCGTAGACCTATGGACTTCTGAGCAGGCTAAACTCCGCCACGAGGGTGGCTCCTCCCCCGCCGCTCCCACCGTTGATGTGGCTGAACAAGGAAGATGGAACTCCACTGAGTTAACTCGAGTTTGGGACCGAGTAAGACGACTCGGTATGAATGGGAAGATGTGTTCTGAAGCTTCTGTTTGTATGTTGGTTGAATTTATGAGTCCATAG

Coding sequence (CDS)

ATTCTATTACTCCTCGTCATGTCGGGGCTCGTAGACCTATGGACTTCTGAGCAGGCTAAACTCCGCCACGAGGGTGGCTCCTCCCCCGCCGCTCCCACCGTTGATGTGGCTGAACAAGGAAGATGGAACTCCACTGAGTTAACTCGAGTTTGGGACCGAGTAAGACGACTCGGTATGAATGGGAAGATGTGTTCTGAAGCTTCTGTTTGTATGTTGGTTGAATTTATGAGTCCATAG

Protein sequence

ILLLLVMSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMNGKMCSEASVCMLVEFMSP*
Homology
BLAST of CsaV3_2G014310 vs. NCBI nr
Match: KAE8651862.1 (hypothetical protein Csa_006004, partial [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 7.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  ILLLLVMSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMN 60
          ILLLLVMSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMN
Sbjct: 1  ILLLLVMSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMCSEASVCMLVEFMSP 79
          GKMCSEASVCMLVEFMSP
Sbjct: 61 GKMCSEASVCMLVEFMSP 78

BLAST of CsaV3_2G014310 vs. NCBI nr
Match: KAA0045984.1 (hypothetical protein E6C27_scaffold243G005370 [Cucumis melo var. makuwa] >TYK13600.1 hypothetical protein E5676_scaffold299G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 6.1e-27
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 7  MSGLVDLWTSEQAKLRHEGGSSPAAPT------VDVAEQGRWNSTELTRVWDRVRRLGMN 66
          MSGL+DLWTSEQAKLR EGGSSPAAPT      VDVAE+GRWN TELTRVWDRVR+LGMN
Sbjct: 1  MSGLIDLWTSEQAKLRGEGGSSPAAPTVDGPVRVDVAEEGRWNFTELTRVWDRVRQLGMN 60

Query: 67 GKMCSEASVCMLVEFMSP 79
          GKMCSEASV +LVE+MSP
Sbjct: 61 GKMCSEASVSILVEYMSP 78

BLAST of CsaV3_2G014310 vs. ExPASy TrEMBL
Match: A0A0A0LIK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237730 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 7  MSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMNGKMCSE 66
          MSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMNGKMCSE
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVDVAEQGRWNSTELTRVWDRVRRLGMNGKMCSE 60

Query: 67 ASVCMLVEFMSP 79
          ASVCMLVEFMSP
Sbjct: 61 ASVCMLVEFMSP 72

BLAST of CsaV3_2G014310 vs. ExPASy TrEMBL
Match: A0A5D3CQ79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00970 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 7  MSGLVDLWTSEQAKLRHEGGSSPAAPT------VDVAEQGRWNSTELTRVWDRVRRLGMN 66
          MSGL+DLWTSEQAKLR EGGSSPAAPT      VDVAE+GRWN TELTRVWDRVR+LGMN
Sbjct: 1  MSGLIDLWTSEQAKLRGEGGSSPAAPTVDGPVRVDVAEEGRWNFTELTRVWDRVRQLGMN 60

Query: 67 GKMCSEASVCMLVEFMSP 79
          GKMCSEASV +LVE+MSP
Sbjct: 61 GKMCSEASVSILVEYMSP 78

BLAST of CsaV3_2G014310 vs. ExPASy TrEMBL
Match: A0A7J7HID1 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009620 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-04
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 7  MSGLVDLWTSEQAKLRH-------EGGSSPAAP-TVDVAEQGRWNSTELTRVWDRVRRLG 66
          MSGLVD+WTSE AKLR+       E GSSP  P +  V +  + +ST L  V   + +L 
Sbjct: 1  MSGLVDMWTSELAKLRNNKDRTIFEAGSSPTTPESSQVVQAQKKSSTNLASV---MPKLN 60

Query: 67 MNGKMCSEASVCMLVEFMSP 79
          +     SEASV MLVE  SP
Sbjct: 61 LPLLTYSEASVSMLVECFSP 77

BLAST of CsaV3_2G014310 vs. ExPASy TrEMBL
Match: A0A4V3WIY2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_021452 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-04
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 3   LLLVMSGLVDLWTSEQAKLRH-------EGGSSPAAP-TVDVAEQGRWNSTELTRVWDRV 62
           L + MSGLVD+WTSE AKLR+       E GSSP  P +  V +  + +ST L  V   +
Sbjct: 81  LKVTMSGLVDMWTSELAKLRNNKDRTIFEAGSSPTTPESSQVVQAQKKSSTNLASV---M 140

Query: 63  RRLGMNGKMCSEASVCMLVEFMSP 79
            +L +     SEASV MLVE  SP
Sbjct: 141 PKLNLPLLTYSEASVSMLVECFSP 161

BLAST of CsaV3_2G014310 vs. ExPASy TrEMBL
Match: A0A2P5C7K8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_177040 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 7  MSGLVDLWTSEQAKLRHEG------GSSPA-APTVDVAEQGRWNSTE----LTRVWDRVR 66
          MSGLVD+WT+E AKL+ +G      GS P+ A + DV ++   +S      L+  + RV 
Sbjct: 1  MSGLVDMWTTEMAKLKEKGQTLFSKGSGPSNAGSFDVVKEKEGSSVSASNGLSSAFSRVM 60

Query: 67 RLGMNGKMCSEASVCMLVEFMSP 79
                 +CSEAS+ M+VE  SP
Sbjct: 61 GANSALALCSEASISMIVECSSP 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651862.17.2e-36100.00hypothetical protein Csa_006004, partial [Cucumis sativus][more]
KAA0045984.16.1e-2782.05hypothetical protein E6C27_scaffold243G005370 [Cucumis melo var. makuwa] >TYK136... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIK65.5e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237730 PE=4 SV=1[more]
A0A5D3CQ792.9e-2782.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7HID16.0e-0446.25Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009620 PE=4 SV=1[more]
A0A4V3WIY26.0e-0445.24Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0214... [more]
A0A2P5C7K87.8e-0439.76Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_177040 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G014310.1CsaV3_2G014310.1mRNA