CsaV3_2G012800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G012800
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 10349266 .. 10349475 (+)
RNA-Seq ExpressionCsaV3_2G012800
SyntenyCsaV3_2G012800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTGCAACAGAGGCTCACCGGCCAACGCTAACTCCAAATGATCCGGAAATGAAGTCGATGGTGGGTCATGCTGGTGACAAGACCATTCCTGCCCATGGAGGAAAAGGGTGCAAGAAAGGCCCGCATTCCAATTGCAAGGAACACCATGGCTGA

mRNA sequence

ATGTCTCTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTGCAACAGAGGCTCACCGGCCAACGCTAACTCCAAATGATCCGGAAATGAAGTCGATGGTGGGTCATGCTGGTGACAAGACCATTCCTGCCCATGGAGGAAAAGGGTGCAAGAAAGGCCCGCATTCCAATTGCAAGGAACACCATGGCTGA

Coding sequence (CDS)

ATGTCTCTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTGCAACAGAGGCTCACCGGCCAACGCTAACTCCAAATGATCCGGAAATGAAGTCGATGGTGGGTCATGCTGGTGACAAGACCATTCCTGCCCATGGAGGAAAAGGGTGCAAGAAAGGCCCGCATTCCAATTGCAAGGAACACCATGGCTGA

Protein sequence

MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGPHSNCKEHHG*
Homology
BLAST of CsaV3_2G012800 vs. NCBI nr
Match: KGN61603.1 (hypothetical protein Csa_006268 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP 60
          MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP 60

Query: 61 HSNCKEHHG 70
          HSNCKEHHG
Sbjct: 61 HSNCKEHHG 69

BLAST of CsaV3_2G012800 vs. NCBI nr
Match: KAA0065661.1 (hypothetical protein E6C27_scaffold90G001210 [Cucumis melo var. makuwa] >TYK01420.1 hypothetical protein E5676_scaffold772G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMV-GHAGDKTIPAHGGKGCKKG 60
          MSLKWVMVFAIAMVLLTAET+TEAHRP LT NDPEMKS+V GH GDKT P HG KGCKKG
Sbjct: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDPEMKSLVGGHIGDKTKPYHGAKGCKKG 60

Query: 61 PHSNCKEHHG 70
          PH NCK+HHG
Sbjct: 61 PHPNCKQHHG 70

BLAST of CsaV3_2G012800 vs. NCBI nr
Match: KAA0065660.1 (hypothetical protein E6C27_scaffold90G001190 [Cucumis melo var. makuwa] >TYK01422.1 hypothetical protein E5676_scaffold772G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----EMKSMVGHAGDKTIPAHGGKG 60
          MSL+W MVF IA++LL+A++  E HRP LT +DP     E++S+  H GD   P   GK 
Sbjct: 1  MSLRWAMVFVIAVMLLSAQSLAEVHRPALTQHDPYYPNKEVESVGHHTGDTANPKI-GKT 60

Query: 61 CKKG-PHSNCK 66
          C+KG P+S CK
Sbjct: 61 CRKGLPYSKCK 70

BLAST of CsaV3_2G012800 vs. ExPASy TrEMBL
Match: A0A0A0LII8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP 60
          MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMVGHAGDKTIPAHGGKGCKKGP 60

Query: 61 HSNCKEHHG 70
          HSNCKEHHG
Sbjct: 61 HSNCKEHHG 69

BLAST of CsaV3_2G012800 vs. ExPASy TrEMBL
Match: A0A5A7VIV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00020 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-24
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMV-GHAGDKTIPAHGGKGCKKG 60
          MSLKWVMVFAIAMVLLTAET+TEAHRP LT NDPEMKS+V GH GDKT P HG KGCKKG
Sbjct: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDPEMKSLVGGHIGDKTKPYHGAKGCKKG 60

Query: 61 PHSNCKEHHG 70
          PH NCK+HHG
Sbjct: 61 PHPNCKQHHG 70

BLAST of CsaV3_2G012800 vs. ExPASy TrEMBL
Match: A0A5A7VEN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----EMKSMVGHAGDKTIPAHGGKG 60
          MSL+W MVF IA++LL+A++  E HRP LT +DP     E++S+  H GD   P   GK 
Sbjct: 1  MSLRWAMVFVIAVMLLSAQSLAEVHRPALTQHDPYYPNKEVESVGHHTGDTANPKI-GKT 60

Query: 61 CKKG-PHSNCK 66
          C+KG P+S CK
Sbjct: 61 CRKGLPYSKCK 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61603.12.8e-31100.00hypothetical protein Csa_006268 [Cucumis sativus][more]
KAA0065661.17.3e-2484.29hypothetical protein E6C27_scaffold90G001210 [Cucumis melo var. makuwa] >TYK0142... [more]
KAA0065660.16.9e-0649.30hypothetical protein E6C27_scaffold90G001190 [Cucumis melo var. makuwa] >TYK0142... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LII81.3e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1[more]
A0A5A7VIV63.5e-2484.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEN63.3e-0649.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012800.1CsaV3_2G012800.1mRNA