CsaV3_2G009460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G009460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 5954301 .. 5955011 (+)
RNA-Seq Expression	CsaV3_2G009460
Synteny	CsaV3_2G009460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAAGACTCAAGACAAGAGATGAAGAGCAAAGGTTGGTCACAACGTGGATAGGAAAAGAAGATAAAAAGAGAGAAGAGAAGAAGAAATGAAAGAGGAAAGCGAAGAGGAAGTTCCTCTTAAGCAAAAGAGAAGTAGGAAAGTTTGCAATCAAAGAAAAAGAAGCTTCCTAAGGTCAAGGACTTTCAGAACTCACTGTCTCTCGCTGTCAGCGACCCTCTCTCCACCACACCAACAAGCTTGTCCTCAAACTCCAAAACCATCAAACAGAAAGATATTCTTACAACCCCTCTATCATCAGCCAAATTAACCAAGTCCCCACCACAGTTTGAGAGATCCAAACTTCAGAACCCAAGTCATCAATCGTTCCTAAAATCCAAATTGACTTGTCGTCACCAAGGCGAGAGCTTGATAATTCTCTTGCTTTAGTGGAACTCGATTCAGCGAGCAAATTCAAATTGCCAAATCTTAATGGCTCAAGGCAAGATGAATTTTGTAAGCACGTCCGTGAACTACATACAATCATCGACCAAGAGGATATGGTAGACAATCAAAATTCATCCTCAAAAGAAAAGAAGGCCATAGGGGTGGGTATTGTTGACCCATTACCCAAGGAAAAAGAACCAAATATAGGACAAGTCGGTGGAACACACCTTCAGGCACCGCAAAAAGAAACTGAGACTACAACGCAGAAGGAGACGGTGTAG

mRNA sequence

ATGGCCAAAAGACTCAAGACAAGAGATGAAGAGCAAAGCGACCCTCTCTCCACCACACCAACAAGCTTGTCCTCAAACTCCAAAACCATCAAACAGAAAGATATTCTTACAACCCCTCTATCATCAGCCAAATTAACCAAGCGAGAGCTTGATAATTCTCTTGCTTTAGTGGAACTCGATTCAGCGAGCAAATTCAAATTGCCAAATCTTAATGGCTCAAGGCAAGATGAATTTTGTAAGCACGTCCGTGAACTACATACAATCATCGACCAAGAGGATATGGTAGACAATCAAAATTCATCCTCAAAAGAAAAGAAGGCCATAGGGGTGGGTATTGTTGACCCATTACCCAAGGAAAAAGAACCAAATATAGGACAAGTCGGTGGAACACACCTTCAGGCACCGCAAAAAGAAACTGAGACTACAACGCAGAAGGAGACGGTGTAG

Coding sequence (CDS)

ATGGCCAAAAGACTCAAGACAAGAGATGAAGAGCAAAGCGACCCTCTCTCCACCACACCAACAAGCTTGTCCTCAAACTCCAAAACCATCAAACAGAAAGATATTCTTACAACCCCTCTATCATCAGCCAAATTAACCAAGCGAGAGCTTGATAATTCTCTTGCTTTAGTGGAACTCGATTCAGCGAGCAAATTCAAATTGCCAAATCTTAATGGCTCAAGGCAAGATGAATTTTGTAAGCACGTCCGTGAACTACATACAATCATCGACCAAGAGGATATGGTAGACAATCAAAATTCATCCTCAAAAGAAAAGAAGGCCATAGGGGTGGGTATTGTTGACCCATTACCCAAGGAAAAAGAACCAAATATAGGACAAGTCGGTGGAACACACCTTCAGGCACCGCAAAAAGAAACTGAGACTACAACGCAGAAGGAGACGGTGTAG

Protein sequence

MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELDSASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEKEPNIGQVGGTHLQAPQKETETTTQKETV*

Homology

[Close]

BLAST of CsaV3_2G009460 vs. NCBI nr
Match: KGN61241.1 (hypothetical protein Csa_006052 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD 60
           MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD
Sbjct: 1   MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD 60

Query: 61  SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK 120
           SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK
Sbjct: 61  SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK 120

Query: 121 EPNIGQVGGTHLQAPQKETETTTQKETV 149
           EPNIGQVGGTHLQAPQKETETTTQKETV
Sbjct: 121 EPNIGQVGGTHLQAPQKETETTTQKETV 148

[Close]

BLAST of CsaV3_2G009460 vs. ExPASy TrEMBL
Match: A0A0A0LMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073040 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD 60
           MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD
Sbjct: 1   MAKRLKTRDEEQSDPLSTTPTSLSSNSKTIKQKDILTTPLSSAKLTKRELDNSLALVELD 60

Query: 61  SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK 120
           SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK
Sbjct: 61  SASKFKLPNLNGSRQDEFCKHVRELHTIIDQEDMVDNQNSSSKEKKAIGVGIVDPLPKEK 120

Query: 121 EPNIGQVGGTHLQAPQKETETTTQKETV 149
           EPNIGQVGGTHLQAPQKETETTTQKETV
Sbjct: 121 EPNIGQVGGTHLQAPQKETETTTQKETV 148

The following BLAST results are available for this feature:

BLAST of CsaV3_2G009460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61241.1	2.0e-71	100.00	hypothetical protein Csa_006052 [Cucumis sativus]	[more]

BLAST of CsaV3_2G009460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G009460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMN3	9.7e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073040 PE=4 SV=1	[more]

BLAST of CsaV3_2G009460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G009460.1	CsaV3_2G009460.1	mRNA