CsaV3_2G008980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G008980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 5445619 .. 5446145 (+)
RNA-Seq Expression	CsaV3_2G008980
Synteny	CsaV3_2G008980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACATTATCATATAGTTGATTAAGTATGGAAAATATTTTCTATTGGGACCATATACAACATGACCGTCGCTATAAATAATACACAAGTTGTATATATTCTTGGACAAATTAATTTCATCAAGTGAAGAAAATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGACGTTGTTTGTTGTTATTTTATGAGTTGATTGATGCTATTTTTATAGATGTGTGATTTTTGTAGTTCAACTCAAACATTTGTAAATAGAGGTGAATTCAAATTTTTATCTCTCCATGGATATATGCTAGTAAAACTATATGCAGATTGACCTTTTTTAGGTGTGT

mRNA sequence

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Protein sequence

MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGCACGGGGCGGGGCGGGD*

Homology

[Close]

BLAST of CsaV3_2G008980 vs. NCBI nr
Match: KGN61189.1 (hypothetical protein Csa_006542 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60
          MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60

Query: 61 ACGGGGCGGGGCGGGD 77
          ACGGGGCGGGGCGGGD
Sbjct: 61 ACGGGGCGGGGCGGGD 76

[Close]

BLAST of CsaV3_2G008980 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MGRPIAAT----IGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGG 60
          MGRPI A     +GDVT    GGL LL+ IL+S+SL+SMIIFAC +  ++R+ +   +GG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGD--SSRKNKRKRNGG 60

Query: 61 AGGCACGGGGCGGGG 72
           GG  CGGGGCGGGG
Sbjct: 61 GGGAGCGGGGCGGGG 73

[Close]

BLAST of CsaV3_2G008980 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 4.9e-05
Identity = 47/81 (58.02%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MGRPIAAT----IGDVTTSIPGGLSLLSLILLSISLLSMIIFAC--SNFFNTRRRRGGDD 60
          MGR I A     +GDVT    GGL LL+ +LLS+SL+SMIIFAC  S+  N R+R GG  
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 GGAGGCACGGGGCGGGGCGGG 76
          GG GG  CGG   GGGGCGGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGG 81

[Close]

BLAST of CsaV3_2G008980 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 49/82 (59.76%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1  MGRPIAATIG------DVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDD 60
          MGRPI A  G      DVT    GGL LLS ILLSISL+SMIIFAC N  N  +R+ G  
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGN-SNDPKRKDGGG 60

Query: 61 GGAGGCACGGGGCGG--GGCGG 75
          G  GG   GGGGCGG  GGCGG
Sbjct: 61 GCGGGDGGGGGGCGGGCGGCGG 81

[Close]

BLAST of CsaV3_2G008980 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60
          MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60

Query: 61 ACGGGGCGGGGCGGGD 77
          ACGGGGCGGGGCGGGD
Sbjct: 61 ACGGGGCGGGGCGGGD 76

The following BLAST results are available for this feature:

BLAST of CsaV3_2G008980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61189.1	2.4e-28	100.00	hypothetical protein Csa_006542 [Cucumis sativus]	[more]
KAG6603229.1	7.5e-06	56.00	hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603228.1	4.9e-05	58.02	hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604774.1	1.1e-04	59.76	hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_2G008980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G008980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJD5	1.2e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1	[more]

BLAST of CsaV3_2G008980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G008980.1	CsaV3_2G008980.1	mRNA