CsaV3_2G006410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G006410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L2, chloroplastic
Location	chr2: 3042150 .. 3042832 (+)
RNA-Seq Expression	CsaV3_2G006410
Synteny	CsaV3_2G006410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCACGTCCGTACATTACTATACATTAAATATAAGAAATTTAAAACGCATATGATTTTAAAATTTTATTAAAATAATTTGTTGTCTTATCCCATTTATTTAATTATTGTCCTCTCAATAAAACTATATTATTTAATCAAAATCATCATTGGCACGTTATGAATAAATTAATAACAAAAATATTCGAGTATATTTGGCCATGTGGTCAATAGCCATATATATCTATGGCTATATCTATATATATTATTTTCTTTAAGTTTAATATTATAATTAAGTCTCTACAATATATAATTAATTGCACTTGTTAAAGACATCAAATTTTTCTTCTCTCTCTTTTATATGTATATTAAAGTAATAGAAAGAGATGTACATGGACACGTGTGTCCATGTGTATCCTTTGTACATATTTTTAAAAATATAAAGAGATATATAAATTGGTTTTTCAAATTAGTGTACTTCATTCAACATACAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATTCTAGGGTAAACCAGAAAAGTTTGGGTAGAGCTGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTATACCATCCCCATGGGGGTGGTGAAGGGAGGATCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGAGTGA

mRNA sequence

ATGGACCACGTCCCAACAGTCGGACAAGTGGGGAATTCTAGGGTAAACCAGAAAAGTTTGGGTAGAGCTGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTATACCATCCCCATGGGGGTGGTGAAGGGAGGATCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGAGTGA

Coding sequence (CDS)

ATGGACCACGTCCCAACAGTCGGACAAGTGGGGAATTCTAGGGTAAACCAGAAAAGTTTGGGTAGAGCTGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTATACCATCCCCATGGGGGTGGTGAAGGGAGGATCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGAGTGA

Protein sequence

MDHVPTVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPWGYPE*

Homology

[Close]

BLAST of CsaV3_2G006410 vs. NCBI nr
Match: KAE8651608.1 (hypothetical protein Csa_021191 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDHVPTVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKK 60
          MDHVPTVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKK
Sbjct: 1  MDHVPTVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKK 60

Query: 61 PATPWGYPE 70
          PATPWGYPE
Sbjct: 61 PATPWGYPE 69

[Close]

BLAST of CsaV3_2G006410 vs. NCBI nr
Match: QVX30120.1 (ribosomal protein L2 [Sweetia fruticosa] >QVX30141.1 ribosomal protein L2 [Sweetia fruticosa])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN RVNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNVRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. NCBI nr
Match: YP_009769042.1 (ribosomal protein L2 [Vatairea guianensis] >YP_009769063.1 ribosomal protein L2 [Vatairea guianensis] >QIS99660.1 ribosomal protein L2 [Vatairea guianensis] >QIS99681.1 ribosomal protein L2 [Vatairea guianensis] >QVX30703.1 ribosomal protein L2 [Vatairea guianensis] >QVX30724.1 ribosomal protein L2 [Vatairea guianensis])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN RVNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNVRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. NCBI nr
Match: AFU96017.1 (Rpl2, partial [Balanops pachyphylla])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR+PIGRKKPATPW
Sbjct: 195 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRVPIGRKKPATPW 254

Query: 66  GYP 69
           GYP
Sbjct: 255 GYP 257

[Close]

BLAST of CsaV3_2G006410 vs. NCBI nr
Match: QGU84369.1 (ribosomal protein L2 [Casearia velutina] >QGU84391.1 ribosomal protein L2 [Casearia velutina] >QGU84456.1 ribosomal protein L2 [Casearia decandra] >QGU84475.1 ribosomal protein L2 [Casearia decandra])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 202 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 261

Query: 66  GYP 69
           GYP
Sbjct: 262 GYP 264

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 190 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 249

Query: 66  GYP 69
           GYP
Sbjct: 250 GYP 252

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot
Match: B1NWJ1 (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 192 TVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 251

Query: 66  GYP 69
           GYP
Sbjct: 252 GYP 254

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL
Match: A0A0A0LIR6 (Ribosomal_L2_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G025690 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 6  TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
          TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW
Sbjct: 15 TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 74

Query: 66 GYPE 70
          GYPE
Sbjct: 75 GYPE 78

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL
Match: A0A6H0EBF5 (Ribosomal protein L2 OS=Vatairea guianensis OX=948959 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.3e-28
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN RVNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNVRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL
Match: K4KP98 (Rpl2 (Fragment) OS=Balanops pachyphylla OX=1241920 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.3e-28
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR+PIGRKKPATPW
Sbjct: 195 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRVPIGRKKPATPW 254

Query: 66  GYP 69
           GYP
Sbjct: 255 GYP 257

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL
Match: A0A1X9RPI8 (50S ribosomal protein L2, chloroplastic OS=Vernicia fordii OX=73154 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 202 TVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 261

Query: 66  GYP 69
           GYP
Sbjct: 262 GYP 264

[Close]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL
Match: A0A075EBV3 (50S ribosomal protein L2, chloroplastic OS=Populus fremontii OX=295326 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN+ VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKPATPW
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-30
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN  VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKP TPW
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-30
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPATPW 65
           TVGQVGN  VNQKSLGRAGSKCWLGKRPVVRGVVMNPV HPHGGGEGR PIGRKKP TPW
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPW 248

Query: 66  GYP 69
           GYP
Sbjct: 249 GYP 251

[Close]

BLAST of CsaV3_2G006410 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 33/66 (50.00%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPAT-- 65
           T+G V N     K L +AG   WLG RP VRGV MNP  HPHGGGEG+      +  T  
Sbjct: 125 TIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSV 184

Query: 66  -PWGYP 69
            PWG P
Sbjct: 185 SPWGKP 190

[Close]

BLAST of CsaV3_2G006410 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 33/66 (50.00%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 6   TVGQVGNSRVNQKSLGRAGSKCWLGKRPVVRGVVMNPVYHPHGGGEGRIPIGRKKPAT-- 65
           T+G V N     K L +AG   WLG RP VRGV MNP  HPHGGGEG+      +  T  
Sbjct: 125 TIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSV 184

Query: 66  -PWGYP 69
            PWG P
Sbjct: 185 SPWGKP 190

[Close]

BLAST of CsaV3_2G006410 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 25/53 (47.17%), Postives = 29/53 (54.72%), Query Frame = 0


Query: 7   VGQVGNSRVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVYHPHGGG 51
           +GQV      +K L +AG+          CW    PVVRGV MNPV HPHGGG
Sbjct: 167 IGQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:

BLAST of CsaV3_2G006410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651608.1	2.0e-34	100.00	hypothetical protein Csa_021191 [Cucumis sativus]	[more]
QVX30120.1	1.1e-27	95.24	ribosomal protein L2 [Sweetia fruticosa] >QVX30141.1 ribosomal protein L2 [Sweet...	[more]
YP_009769042.1	1.1e-27	95.24	ribosomal protein L2 [Vatairea guianensis] >YP_009769063.1 ribosomal protein L2 ...	[more]
AFU96017.1	1.1e-27	93.65	Rpl2, partial [Balanops pachyphylla]	[more]
QGU84369.1	3.2e-27	93.65	ribosomal protein L2 [Casearia velutina] >QGU84391.1 ribosomal protein L2 [Casea...	[more]

BLAST of CsaV3_2G006410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14F95	4.1e-30	93.65	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q14FB6	4.1e-30	93.65	50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=...	[more]
Q4VZK5	4.1e-30	93.65	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
B1NWJ1	4.1e-30	93.65	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A P...	[more]
A4GYV2	4.1e-30	93.65	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A...	[more]

BLAST of CsaV3_2G006410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIR6	3.9e-31	100.00	Ribosomal_L2_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G025...	[more]
A0A6H0EBF5	5.3e-28	95.24	Ribosomal protein L2 OS=Vatairea guianensis OX=948959 GN=rpl2 PE=3 SV=1	[more]
K4KP98	5.3e-28	93.65	Rpl2 (Fragment) OS=Balanops pachyphylla OX=1241920 GN=rpl2 PE=3 SV=1	[more]
A0A1X9RPI8	1.5e-27	93.65	50S ribosomal protein L2, chloroplastic OS=Vernicia fordii OX=73154 GN=rpl2 PE=3...	[more]
A0A075EBV3	1.5e-27	93.65	50S ribosomal protein L2, chloroplastic OS=Populus fremontii OX=295326 GN=rpl2 P...	[more]

BLAST of CsaV3_2G006410 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.9e-30	92.06	ribosomal protein L2	[more]
ATCG01310.1	1.9e-30	92.06	ribosomal protein L2	[more]
AT2G44065.1	1.2e-11	50.00	Ribosomal protein L2 family	[more]
AT2G44065.2	1.2e-11	50.00	Ribosomal protein L2 family	[more]
AT3G51190.1	1.2e-05	47.17	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..68 e-value: 2.6E-9 score: 29.9
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 5..66 e-value: 8.2E-23 score: 80.9
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 11..69 e-value: 1.7E-25 score: 91.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR13691:SF51	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 4..68
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 4..68
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G006410.1	CsaV3_2G006410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome