CsaV3_2G003970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G003970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Histone H1-like
Location	chr2: 2055416 .. 2058738 (-)
RNA-Seq Expression	CsaV3_2G003970
Synteny	CsaV3_2G003970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGCTACAAAAGCATTCCAAAGATCATTAAATTTCATTAAGCATTAAACAAGTTATGGCCTTAAGAATTGAAGTGAAAAACACATAAAAAAACTCCCAATCTCCATACTCAACATGCCAATCCATATCCGTTCTCAATCCCTACTTTGAATGCTCACCGTGGATAAACCCAAGATCTAACGGCTGAAATTTAAAATTTTACGAGGATCTCGATCCGCGTCGAAAGACTCTCGACCAATCAGATCGCAGTAGCATGATTTCGTTTGATTATATAAACCGCTCTCAACCGTCTCTCTCCTCATCGAATTTTCTCTCTCTAAAATATTTTCCTCTCCCTCTCTTCTAATCGATTCCATTTCCAATAATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGGTGTGTATGGATGATTGATCTTTGTTGTGATTGTTTATTGTTATTCCGATCGAGTTTTTACGTTTTGTTCTGATTGAATTTTGAAATTGTTTCTCTAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCAGCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCTCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTATGTGTTTAGGGTTTTTGATTAATTTCTAGGGTTTTCTTATTAATAGTACGTAGCGATGTAAATTAGGGATATGATATGAGAGATGCAACCGCTCGTTGTTATACAATATTTTTATCAAATTTTAGTTTGGTAAATTCTCAATGGTCTATCTTCAAATCAGTCTTTTCTTTTGAATGAATTGAATGATCATCTCTTTGCTTCTGGTTTATCGTTAAAGCTTTTTGAGTTTTGCTTCAATGGCGGATTTCCCGTAATTAAAAGCGTCGTTTTGGTCGTTTATGTACATAAAACGCAAATTTCATAATCAGAACAGTTCACGTGCGTTGCACGCGATTTCGAACCCACGTCGGCACCACGTGGCTAATTTTTTGGAACTTCTGATTAAACTTTAATTATTTATTAATTTTGGGTTTCGGTGTTATTTTGTATTAATTCAATAATATTTCGTTAGTTTATTTTTGAAAAAGAATTCCATTAACTTATTCGTTCTTCAATTAACTTAATTGCCCATTTTTTTATTTCATTGAATATGTGACAAAGGGTTTGATGATGATTTAAATTCAAAATCTAAAGCAAAAATTAATCCGAAGAACAGTACTCTCCCAAGAAGACATGGGAGTGTATATTCATTCCAATGTGTTAACAACTTTAGGCAAGCATATAGATAGTAACATCTTTTGTGGTTATTCCCTAAAGAAGAATTCCATTTCCATCTTCACTTCGTGAGCTTGAATCTTCAAACACACACCCCGTGAAGTTCCAACTCTGCATAAAAGTCATGTAAACAGACAAAGTTAAAGCTTCATTGGAGAGAACCTCATCATTCTCTTGTGACAATGTCTTTTCAAGAGGTTCCAAATTTGAACAAAATAGGAAGTTCAAATGTGCCTTCATAAATTTTACTCTACTCCATTTTTATAAATTCAAAAGCTTGTCTGCTTAAACGTCTTATTAATGAAGTAAAGGAAGAAATGGAATTACATTAGGATCTGTAATTTCACTTACTAAAATACGGAAGAATTAACAATGACTAAAATTAAGTGTTTGAAAGTTTAGAGACCAAGTGAGGGTATGATGAACATCAAAATGTCGATTCTATAAATCTTTGTGCGCAAGACAGTGTGTCAAGCCATTATACCGACAATGGGAATGAGCGAATGAAACTTTGTTGAGTCCATGGAGTTGTTCAACAGGTTCACTACTTTCATTATCTTAACGATCTTCAAGTTTATATTGCTTGCTATATTTCCATATTTTATATGCTTGAGAACTTGAAATTCTTGAAAAGAGAGACATACTATTGATTTGCCTGTGATAGATCAGAAGATGAGTCCTTGTTAGGTTTGATCAAAGTAGTCGAGTCACCTCAGCTCTGCGTGTCTTACTGTCTCGAGTTTCTTCAAAATATTGACAGACATGACGTGTTCATCCCAATCTTCCTGCAATAAGCATCACCAACACCATTGCCAAAACAAAAAAGAAGAAAAAGAAAAGACGGCTTACATTTCGAATGAATTTCATGTAAATCATCATTCAAGATTTTTTCGCCAGGTTTATGTTTCGAACTGTTTAACAATTTCTAGTTACCCAAGAAATGACGGCTTGTAATTGCTTGTTTGAATTGTGAATAGACTTCTCGAAAGTATACATACCTGAATTATAATTTCTGCTTCGTGCGTCTAGCAAGGAAAAATTTAAGTAGCAAGCTGGAATGCCAGTGTACTTTCTGCCTGCTTTTCAGTTCCCAAACCTGGAAATTGCCCAATATCATGTCCTTGAATGGGCTGAAACTCCTTATGTAAACCAACTGCGAATTCTTCGGAGTGTTCGCTGCCACTTCGGAAGTAATCTGCAATCTACAGTGACATTTTGTTTTCGGTAAATATAATGCACAAAAATCCAGGGAGATCTGACTGCCATTACATCTTTTCACACATAGCAAATATGGAACTGCCCTTCCAACTACTGAATATTGAGCGGTATGCTTGTCATGGATAAATTAGAAACATGAGTACAAATAAAGAAAACTCAACAAGCTTACATGATTTCCAAGAGCTATCCCAC

mRNA sequence

ATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCAGCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCTCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Coding sequence (CDS)

ATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCAGCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCTCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKKVAAKKPKTVKSPARKVQARKVKK*

Homology

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BLAST of CsaV3_2G003970 vs. NCBI nr
Match: XP_004139246.1 (histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 7.5e-114
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240

Query: 241 VAAKKPKTVKSPARKVQARKVKK 264
           VAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 VAAKKPKTVKSPARKVQARKVKK 263

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BLAST of CsaV3_2G003970 vs. NCBI nr
Match: KAA0063593.1 (histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-101
Identity = 247/267 (92.51%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA---AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPA   AAVAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTAAKPKPKAVAK 180
           YKLPSARSIQAK  AAAAAPV  KKPVSSKLKA ASIKK AVAK KAKTAAKPKPKAVAK
Sbjct: 121 YKLPSARSIQAK--AAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK  AKA KVAKTLSRTSPGKRAAPA 
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 264
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

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BLAST of CsaV3_2G003970 vs. NCBI nr
Match: XP_008456174.1 (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-100
Identity = 246/267 (92.13%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA---AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPA   AAVAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTAAKPKPKAVAK 180
           YKLPSARSIQAK  AAAAAPV  KKPVSSKLKA ASIKK AVAK KAKTAAK KPKAVAK
Sbjct: 121 YKLPSARSIQAK--AAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK  AKA KVAKTLSRTSPGKRAAPA 
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 264
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

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BLAST of CsaV3_2G003970 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-89
Identity = 229/268 (85.45%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPKAVA  
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA-- 180

Query: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPA 240
           KPK  AKSK VAKPK    AK KAAEKVKKVAPKPKPAAK AKVAKTLSRTSPGK+AAPA
Sbjct: 181 KPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 260

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BLAST of CsaV3_2G003970 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-89
Identity = 228/268 (85.07%), Postives = 237/268 (88.43%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPKAVA  
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA-- 180

Query: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPA 240
           KPK+ AKSK VAKPK    AK KAAEKVKKVAPKPKPAAK AKVAKTLSRTSPGK+AAPA
Sbjct: 181 KPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 260

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BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 140/276 (50.72%), Postives = 166/276 (60.14%), Query Frame = 0


Query: 10  ISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLK 69
           + +  AA      E +  AK   A K +KAKKP+  +K  ++PTHPP+ +MI +AIV+LK
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLK 71

Query: 70  ERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAK 129
           ERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA+EKLVKVKNSYKLPS     A 
Sbjct: 72  ERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAA 131

Query: 130 AAAAAAAPVTAK---------------KPVSSKLKAASIKKAAVAK--SKAKTAAKPKPK 189
           A  A   P  AK               KP +    AA  K AA AK  +KAK AAK KP 
Sbjct: 132 AVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPA 191

Query: 190 AVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAK--AAKVAKTLSRTSPGK 249
           A AKP  K   K+   AKPK A K KAA    K A KP   AK   AKVAKT +RT+P +
Sbjct: 192 AKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSR 251

Query: 250 RAAP-ATKAKKVAAKK--PKTVKSPARKVQARKVKK 264
           +AAP AT AKK   KK   K VKSPA+K   ++ +K
Sbjct: 252 KAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

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BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-34
Identity = 141/253 (55.73%), Postives = 157/253 (62.06%), Query Frame = 0


Query: 10  ISDAPAAAVAQPAENDSKAK---KAAASKASKAKKP-SGAKKARSSPT--HPPFLQMISE 69
           ++D P +A   P   + K+K   KAAA K  K KK    AKK +S  T  HP F +MIS+
Sbjct: 1   MADTPVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISD 60

Query: 70  AIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 129
           AI +LKERTGSSQYAI KF E+KHKQLPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPSA
Sbjct: 61  AISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSA 120

Query: 130 RSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVA 189
           R        AA AP  AKKP   K K A+  K       AK  AKPK K  AK   KT A
Sbjct: 121 R--------AAPAPALAKKPTIPKPKVAAKPKT------AKIGAKPKAK--AKVAAKTKA 180

Query: 190 KSKTVAKPKTAAKTKAAEKVKKVAPKPKP-AAKAAKVAKTLSRTSPGKRAAPATKAKKVA 249
            +KTVAK   AAK KA     K A KPK  AAK AKVAKT +  SPGK+       K V 
Sbjct: 181 TTKTVAKKIPAAKPKA-----KTAGKPKTVAAKPAKVAKTAAVASPGKK-------KAVP 225

Query: 250 AKKPKTVKSPARK 256
            KK KTVKSPA K
Sbjct: 241 VKKVKTVKSPAGK 225

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BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.8e-33
Identity = 140/275 (50.91%), Postives = 170/275 (61.82%), Query Frame = 0


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPE-----KKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 181
           PSARS    A    AAPV  K  V +K K      AAVA +KAK AA    K   KP  K
Sbjct: 134 PSARS---AATPKPAAPVKKKATVVAKPKGK--VAAAVAPAKAKAAA----KGTKKPAAK 193

Query: 182 TVAKSKTVAKPK---TAAKTK-----AAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKR- 241
            VAK+K  AKPK   TAAK K     A  K K VA KPK   + AK ++T +RTSPGK+ 
Sbjct: 194 VVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKV 253

Query: 242 AAPATK---AKKVAAKKPKTVKSPARKVQARKVKK 264
           AAPA K    KK  AK  K VKSPA++   RK KK
Sbjct: 254 AAPAKKVAVTKKAPAKSVK-VKSPAKRASTRKAKK 273

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BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 7.5e-32
Identity = 138/265 (52.08%), Postives = 155/265 (58.49%), Query Frame = 0


Query: 5   ADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEA 64
           A  V  + AP    A  A  D+ A  AA + A+KAKK +  KK R+SPTH P+ +M+SEA
Sbjct: 2   ATDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKK-RASPTHLPYAEMVSEA 61

Query: 65  IVSLKERTGSSQYAITKFTEEKHK-QLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 124
           I SLKERTGSS YAI KF E+KHK +LP NFRKLL V LKKLVA  KL KVKNSYKL SA
Sbjct: 62  ITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSA 121

Query: 125 RSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKP--KPKT 184
                K  AA   P T  K           K  A AK KAKT AK KP    KP  KPK 
Sbjct: 122 TKPNPKPKAAPKKPKTGAK-----------KPKAAAKPKAKTPAKAKPATKPKPAAKPKA 181

Query: 185 VAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAK---AAKVAKTLSRTSPGKRAAPATKA 244
           V K KT AKPK  AK  A  K K    KPKP AK    AK AKT ++ +PGK+ APA KA
Sbjct: 182 VVKPKTPAKPK--AKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKKA 241

Query: 245 KKVAAKKPKTVKSPARKVQARKVKK 264
               +KK  T   P RK  +RK KK
Sbjct: 242 --APSKKAAT---PVRKAPSRKAKK 246

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-31
Identity = 129/257 (50.19%), Postives = 156/257 (60.70%), Query Frame = 0


Query: 18  VAQPAENDSKAKKAAASKASKAK--KPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSS 77
           + +P   + +  KA   K  KAK  KP  A K R+  +HP + +MI +AIVSLKE+ GSS
Sbjct: 24  ITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSS 83

Query: 78  QYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAA 137
           QYAI KF EEK KQLP+NF+KLLL +LKK VA+ KL+KVK S+KL +A            
Sbjct: 84  QYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA------------ 143

Query: 138 APVTAKKPVSSKLKAASIKKAAVAKS-KAKTAAKPKPKAVAKPKPKTVAKS------KTV 197
               AKKP  +K KA   K AA AKS KAK AAKPK KAV KPK  + AK+      K  
Sbjct: 144 ----AKKPAVAKPKA---KTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAA 203

Query: 198 AKPKT-AAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATK--AKKVAAK- 257
           AKPKT AAKTK      K   KPK   K AKVAKT  +T+PGK+ A   K  AKKV  K 
Sbjct: 204 AKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKS 261

Query: 258 -KPKTVKSPARKVQARK 261
            K K+VKSP +KV  ++
Sbjct: 264 VKAKSVKSPVKKVSVKR 261

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 9.3e-102
Identity = 247/267 (92.51%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA---AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPA   AAVAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTAAKPKPKAVAK 180
           YKLPSARSIQAK  AAAAAPV  KKPVSSKLKA ASIKK AVAK KAKTAAKPKPKAVAK
Sbjct: 121 YKLPSARSIQAK--AAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK  AKA KVAKTLSRTSPGKRAAPA 
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 264
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL
Match: A0A1S3C278 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.9e-101
Identity = 246/267 (92.13%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA---AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPA   AAVAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTAAKPKPKAVAK 180
           YKLPSARSIQAK  AAAAAPV  KKPVSSKLKA ASIKK AVAK KAKTAAK KPKAVAK
Sbjct: 121 YKLPSARSIQAK--AAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK  AKA KVAKTLSRTSPGKRAAPA 
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 264
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL
Match: A0A0A0LLA4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010270 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 6.7e-100
Identity = 241/263 (91.63%), Postives = 241/263 (91.63%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA                      K
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA----------------------K 240

Query: 241 VAAKKPKTVKSPARKVQARKVKK 264
           VAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 VAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.4e-89
Identity = 228/268 (85.07%), Postives = 237/268 (88.43%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPKAVA  
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA-- 180

Query: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPA 240
           KPK+ AKSK VAKPK    AK KAAEKVKKVAPKPKPAAK AKVAKTLSRTSPGK+AAPA
Sbjct: 181 KPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.9e-87
Identity = 224/268 (83.58%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  A VA P ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPK VA  
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVA-- 180

Query: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPA 240
           KPK  AKSK V KPK    AK KAAEKVKKVAPKPKPAAK AKVAKTLSR SPGK+AAPA
Sbjct: 181 KPKAAAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CsaV3_2G003970 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-34
Identity = 140/275 (50.91%), Postives = 170/275 (61.82%), Query Frame = 0


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPE-----KKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 181
           PSARS    A    AAPV  K  V +K K      AAVA +KAK AA    K   KP  K
Sbjct: 134 PSARS---AATPKPAAPVKKKATVVAKPKGK--VAAAVAPAKAKAAA----KGTKKPAAK 193

Query: 182 TVAKSKTVAKPK---TAAKTK-----AAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKR- 241
            VAK+K  AKPK   TAAK K     A  K K VA KPK   + AK ++T +RTSPGK+ 
Sbjct: 194 VVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKV 253

Query: 242 AAPATK---AKKVAAKKPKTVKSPARKVQARKVKK 264
           AAPA K    KK  AK  K VKSPA++   RK KK
Sbjct: 254 AAPAKKVAVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of CsaV3_2G003970 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-29
Identity = 130/267 (48.69%), Postives = 159/267 (59.55%), Query Frame = 0


Query: 11  SDAPAAAVAQPAENDSKAKKAAASKASKAKKP-SGAKKARSSPTHPPFLQMISEAIVSLK 70
           +DAP    A   +  +K +K    K  K KK  + A K R+  +HP + +MI +AIV+LK
Sbjct: 18  ADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLK 77

Query: 71  ERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAK 130
           ERTGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA    AK
Sbjct: 78  ERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA---SAK 137

Query: 131 AAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVA 190
           A++  AA   A+K   +K K A++   AV K+K K AA  K K     KPKT A  K  A
Sbjct: 138 ASSPKAA---AEKSAPAKKKPATV---AVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTA 197

Query: 191 KPK---TAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATK-------AK 250
           K K       T AA K K V  KPK  A+ AK AKT   TSP K+A  ATK        K
Sbjct: 198 KAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKK 257

Query: 251 KVAAK---KPKTVKSPARKVQARKVKK 264
           K   K   KPKTVKSPA++  +R VKK
Sbjct: 258 KTPVKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of CsaV3_2G003970 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 101.7 bits (252), Expect = 9.4e-22
Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 0


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPE-----KKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 181
           PSARS    A    AAPV  K  V +K KA+  + +       K AA  K  AV K  P 
Sbjct: 134 PSARS---AATPKPAAPVKKKATVVAKPKAS--RTSTRTSPGKKVAAPAKKVAVTKKAP- 193

Query: 182 TVAKSKTVAKPKTAAKTKAAEK 203
             AKS  V  P   A T+ A+K
Sbjct: 194 --AKSVKVKSPAKRASTRKAKK 202

[Close]

BLAST of CsaV3_2G003970 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-09
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 40  KKPSGAKKAR--SSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQ-LPSNFRK 99
           KK   AKK R   + THPP+ QMI EA++ LKE+ GSS YAI K  EEKHK  LP +FRK
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 100 LLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKA 159
            L + LK  VA  KLVK++ SYKL     +           +T ++   +K K    +  
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKM-----------ITRQQDKKNK-KNMKQEDK 127

Query: 160 AVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVA 208
            + K    ++ +PK K V+  K +   K K   +PK+   +   +K  K +
Sbjct: 128 EITKRTRSSSTRPK-KTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKAS 165

The following BLAST results are available for this feature:

BLAST of CsaV3_2G003970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139246.1	7.5e-114	100.00	histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucu...	[more]
KAA0063593.1	1.9e-101	92.51	histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis ...	[more]
XP_008456174.1	1.6e-100	92.13	PREDICTED: histone H1-like [Cucumis melo]	[more]
KAG6599320.1	1.3e-89	85.45	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946127.1	2.9e-89	85.07	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]

BLAST of CsaV3_2G003970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	1.2e-37	50.72	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
Q9M5W4	1.6e-34	55.73	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P26569	6.8e-33	50.91	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P23444	7.5e-32	52.08	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	3.7e-31	50.19	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of CsaV3_2G003970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4H1	9.3e-102	92.51	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A1S3C278	7.9e-101	92.13	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1	[more]
A0A0A0LLA4	6.7e-100	91.63	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010270 PE=3 SV...	[more]
A0A6J1G2W2	1.4e-89	85.07	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	2.9e-87	83.58	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]

BLAST of CsaV3_2G003970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	4.8e-34	50.91	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	6.1e-29	48.69	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	9.4e-22	47.52	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	9.1e-09	36.84	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 186..203 score: 37.65 coord: 67..84 score: 38.89 coord: 208..227 score: 31.67 coord: 40..61 score: 39.39 coord: 148..162 score: 42.96
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 51..117 e-value: 4.7E-30 score: 115.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 54..120 e-value: 3.5E-16 score: 59.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 53..122 score: 28.698616
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 51..125 e-value: 4.80075E-13 score: 61.4831
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 46..135 e-value: 2.6E-20 score: 74.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 2..263
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 2..263
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 50..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G003970.1	CsaV3_2G003970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding