CsaV3_2G003890 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G003890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Location	chr2: 2003186 .. 2003733 (-)
RNA-Seq Expression	CsaV3_2G003890
Synteny	CsaV3_2G003890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGTTTTTTCTCTCTCACAAATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGAATGATATATTATGAAGTTTGTGTATAGTTTTCTTGTTTTTTATTTTCATATATTTAATTTATTTGAGAATTGATAATGTAATTGGATTGGCCAAAATTTTCCATTCTTTTGTTTTTTGAATTACAAACGAAAATTGTTGAATATGAAATGATGTTGAGTTTCAAAAAAACAAAAGGATATTTGTTGATGAT

mRNA sequence

ATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Protein sequence

MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS*

Homology

[Close]

BLAST of CsaV3_2G003890 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of CsaV3_2G003890 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 8.9e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of CsaV3_2G003890 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 21  MSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 80
           MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPGFSRGRCTLSE D+G A+V G
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 81  GSSAFPGLNADGFAAASVVNQTQKQDSSM 110
           GSSA  GLNADGFAAAS+ N+TQK+D S+
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKKDPSL 89

[Close]

BLAST of CsaV3_2G003890 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 72/113 (63.72%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MAFSLMKT--VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFI 60
           M FS+MKT   AF+FI L I  +SAARVL GERW P   V   MLRG VP S RNPCSFI
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGFSRGRCTLSEVDE--GDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 110
           PG  RGRCTLSEV++  G     GGSSAFPG+N DGF+AA++VN TQKQD S+
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

[Close]

BLAST of CsaV3_2G003890 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 22  SAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGG 81
           +A R+L+ E+WL  +++  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D      R  
Sbjct: 32  AAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAP 91

Query: 82  SSAFPGLNADGFAAA---SVVNQTQKQDSS 109
           ++AFP +  D  A     S  N+TQKQDSS
Sbjct: 92  AAAFPDIVVDFGAVTAGNSGANETQKQDSS 121

[Close]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.3e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL
Match: A0A0B2RDN7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.4e-08
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 12 LFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEV 71
          + + LS+      R L GE+WL  ++V  ++ RGPV SS RNPCS +PG SRGRCTL E+
Sbjct: 14 MILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEI 73

Query: 72 D 73
          +
Sbjct: 74 N 74

[Close]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL
Match: I1JRQ4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.4e-08
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 12 LFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEV 71
          + + LS+      R L GE+WL  ++V  ++ RGPV SS RNPCS +PG SRGRCTL E+
Sbjct: 14 MILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEI 73

Query: 72 D 73
          +
Sbjct: 74 N 74

[Close]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-08
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 23  AARVLNGERWLPG--SMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 82
           A R L GE WL    ++   ++ RGPV  S  NPC++IPG  RGRCTL+E +E + S R 
Sbjct: 24  ATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGRCTLAE-NESNYSGRV 83

Query: 83  GSS---AFPGLNADGFAAASVVNQTQKQDSS 109
           G +   AFPG+    FA AS  N ++KQD S
Sbjct: 84  GHAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

The following BLAST results are available for this feature:

BLAST of CsaV3_2G003890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60782.1	3.5e-52	100.00	hypothetical protein Csa_019261 [Cucumis sativus]	[more]
KAA0063581.1	8.9e-40	82.88	hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790...	[more]
KAG6599331.1	3.7e-30	77.53	hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6586324.1	4.7e-25	63.72	hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_021888699.1	7.8e-12	47.78	uncharacterized protein LOC110807772 [Carica papaya]	[more]

BLAST of CsaV3_2G003890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ84	1.7e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1	[more]
A0A5A7VCY2	4.3e-40	82.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0B2RDN7	7.4e-08	49.18	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1	[more]
I1JRQ4	7.4e-08	49.18	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1	[more]
A0A6A4KR04	9.7e-08	46.15	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of CsaV3_2G003890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF6	SUBFAMILY NOT NAMED	coord: 4..107
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G003890.1	CsaV3_2G003890.1	mRNA