CsaV3_2G003870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G003870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	VQ domain-containing protein
Location	chr2: 1981135 .. 1982050 (-)
RNA-Seq Expression	CsaV3_2G003870
Synteny	CsaV3_2G003870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGACGGAGAGGAAAAGTTTGTGGATGATGAGTGACATCATGACTTTTTTAGCTATAAAATATAATTTTTGTGAGACTTTGTATTTAGTATGTGAAAGGTTATATATGAATATATAGATTTGAATTTTCTTTTGATTATTATAGAACACACATGTATGAGAATATTAGTTAAAAACAAAAAAAATGAAATGATTCCGAACATAACTTAACCTAAGTATATATTATATGCTCAACTGAATAAAATATAAATTCTCAATCCAAGAATAAAAAATGAAAGGATTTGATTAATTGGAATATTTTAGTACAGTGGTAGTGTTTATGTTGTGTTAGAACTCAATCTAAATGTTTGAATATTTGACTGGGAAATTATTCTTTGATTAGTGTCCCAATTAATTATAAAACTATTGAATTTAATTCATTAGGATTTCCTCTCAAAAACTATTAATGTATAATAATTCTTATGTAGGCATAAGACATGTCAAGAAAATTAG

mRNA sequence

ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGCATAAGACATGTCAAGAAAATTAG

Coding sequence (CDS)

ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGCATAAGACATGTCAAGAAAATTAG

Protein sequence

MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIWHKTCQEN*

Homology

[Close]

BLAST of CsaV3_2G003870 vs. NCBI nr
Match: KAE8651551.1 (hypothetical protein Csa_019210 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 8.0e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120
           QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR
Sbjct: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120

Query: 121 GEMELGSFSGFQASSCVNIWHKTCQEN 148
           GEMELGSFSGFQASSCVNIWHKTCQEN
Sbjct: 121 GEMELGSFSGFQASSCVNIWHKTCQEN 147

[Close]

BLAST of CsaV3_2G003870 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-59
Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPKDCYGNSASGDVLF-DRIEDG 120
           TGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+DCYG SASGDVLF DRIEDG
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYG-SASGDVLFDDRIEDG 120

Query: 121 DEGRYWRGEMELGSFSGFQASSCVNIW 141
           DEGRYWRGEME GSFSGFQASSCVNIW
Sbjct: 121 DEGRYWRGEME-GSFSGFQASSCVNIW 145

[Close]

BLAST of CsaV3_2G003870 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 88/114 (77.19%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 28  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP-DHDDQSVQDFNHVFYPPPPSSS 87
           QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP D  DQS +DFN VFY PPPSS 
Sbjct: 3   QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPHDAFDQSAEDFNQVFY-PPPSSM 62

Query: 88  PGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW 141
              SFDPKDCY  SASGDVLFD          W+GEME GSFSGFQASSCVN W
Sbjct: 63  AAPSFDPKDCYA-SASGDVLFD----------WQGEME-GSFSGFQASSCVNTW 103

[Close]

BLAST of CsaV3_2G003870 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-21
Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTG
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTG 60

Query: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120
           QHS D   D+S Q+FNH F PP   SS   SFD KDCY          D +         
Sbjct: 61  QHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY----------DLVSSDAYDPIG 120

Query: 121 RGEMELGSFSGFQASSCVNIW 141
            GEM+  S  GFQA S V++W
Sbjct: 121 VGEMK-DSLYGFQA-SYVDVW 124

[Close]

BLAST of CsaV3_2G003870 vs. NCBI nr
Match: KAG6586326.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-21
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKA+NE EFRAIVQKLTG
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKASNEFEFRAIVQKLTG 60

Query: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120
           QHS D   D+S Q+FNH F PP   SS   SFD KDCY +  S D  +D I         
Sbjct: 61  QHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY-DLVSSDA-YDPIR-------- 120

Query: 121 RGEMELGSFSGFQASSCVNIW 141
            GEM+  S  GFQA S V++W
Sbjct: 121 VGEMK-DSLYGFQA-SYVDVW 124

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 44/135 (32.59%), Postives = 64/135 (47.41%), Query Frame = 0


Query: 14  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDD 73
           KK S VS K+    +     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   
Sbjct: 17  KKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQP 76

Query: 74  Q---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGNSASGDV-LFDRIEDGDEGRY 133
           +   S    +H   PP  + +P V           DCY    + D+ L D++  G  G +
Sbjct: 77  EPIYSPSSDDHNLSPPAENLAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFF 136

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.4e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120
           QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR
Sbjct: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120

Query: 121 GEMELGSFSGFQASSCVNIW 141
           GEMELGSFSGFQASSCVNIW
Sbjct: 121 GEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPKDCYGNSASGDVLF-DRIEDG 120
           TGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+DCYG SASGDVLF DRIEDG
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYG-SASGDVLFDDRIEDG 120

Query: 121 DEGRYWRGEMELGSFSGFQASSCVNIW 141
           DEGRYWRGEME GSFSGFQASSCVNIW
Sbjct: 121 DEGRYWRGEME-GSFSGFQASSCVNIW 145

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTG
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTG 60

Query: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120
           QHS D   D+S Q+FNH F PP   SS   SFD KDCY          D +         
Sbjct: 61  QHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY----------DLVSSDAYDPIG 120

Query: 121 RGEMELGSFSGFQASSCVNIW 141
            GEM+  S  GFQA S V++W
Sbjct: 121 VGEMK-DSLYGFQA-SYVDVW 124

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 30  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQS-----VQDFNHVFYPPPPS 89
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS
Sbjct: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62

Query: 90  SSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW 141
           ++  VS DPK  YG      ++  ++ +  EG + + EM+   FSGFQA SCVN +
Sbjct: 63  TA--VSTDPKGYYG------LVSGKVGELGEGCFRQDEMQ--GFSGFQA-SCVNTY 107

[Close]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL
Match: W9RT96 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 20  SNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS-------PDHDDQSVQ 79
           S K     + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S         H D+S+ 
Sbjct: 20  SQKQPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYTDLYDDVHHDESLN 79

Query: 80  DFNHVF----YPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDG-------------DE 138
               +F    +  P  S     + P+    ++   D   D    G             DE
Sbjct: 80  RTTTIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRDHDHHVGGKFSNPNVSLLGQIDE 139

[Close]

BLAST of CsaV3_2G003870 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-05
Identity = 44/135 (32.59%), Postives = 64/135 (47.41%), Query Frame = 0


Query: 14  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDD 73
           KK S VS K+    +     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   
Sbjct: 17  KKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQP 76

Query: 74  Q---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGNSASGDV-LFDRIEDGDEGRY 133
           +   S    +H   PP  + +P V           DCY    + D+ L D++  G  G +
Sbjct: 77  EPIYSPSSDDHNLSPPAENLAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFF 136

[Close]

BLAST of CsaV3_2G003870 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.5e-04
Identity = 40/122 (32.79%), Postives = 57/122 (46.72%), Query Frame = 0


Query: 22  KATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPP 81
           K+T  H  KPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D              PP
Sbjct: 29  KSTTTH--KPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD-------------LPP 88

Query: 82  PPSSSPGVSFDPKDCYG----NSASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCV 140
            P++   V    + C          G+V  +     DE  +   +M  G  SGF +S   
Sbjct: 89  SPTTFTAVDLH-RPCESEMNLEPLDGEVRGEYYSPLDEEVFNAPQMSAG-LSGFFSSGFY 132

The following BLAST results are available for this feature:

BLAST of CsaV3_2G003870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651551.1	8.0e-81	100.00	hypothetical protein Csa_019210 [Cucumis sativus]	[more]
KAA0063579.1	2.3e-59	87.76	VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-cont...	[more]
XP_038877668.1	1.5e-34	77.19	sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]	[more]
XP_022938305.1	2.5e-21	52.48	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6586326.1	3.2e-21	53.90	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of CsaV3_2G003870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	2.8e-04	32.59	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CsaV3_2G003870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFF9	6.4e-76	100.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=...	[more]
A0A5A7VDH6	1.1e-59	87.76	VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1FJE0	1.2e-21	52.48	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CME4	1.2e-18	53.45	sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=367...	[more]
W9RT96	4.9e-07	37.76	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV...	[more]

BLAST of CsaV3_2G003870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.0e-05	32.59	sigma factor binding protein 1	[more]
AT2G41180.1	6.5e-04	32.79	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 37..65 e-value: 4.8E-9 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..93
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 10..86
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 10..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G003870.1	CsaV3_2G003870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity