CsaV3_2G002700 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G002700
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	zinc finger CCCH domain-containing protein 39-like
Location	chr2: 1192919 .. 1195234 (-)
RNA-Seq Expression	CsaV3_2G002700
Synteny	CsaV3_2G002700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGATTCCATGGTTTTGGCCTTCCTCAATCCTTCCGATTTTCATTAGGGTTTTCGTTTCTCCTTGGCGGCTAGGGTTTTGATTCTTCATTCACTTTGTTGTTTTTCTTTTCAACATCTCATTATAAATATATAACTATAACTCTTTCACTTTCGCCATTGTTATGATTCCTTCTTCCATTGATCTTCATTCCGCTGTTTTTTTTTATTGATATTTCAAACACCCTTTTGTTTATTTATCCAACTCAACGTTAATTTGCCTACTTTTCTTGTTTTCTTGTTTTCTTGTTTTTTCTTCTTCTTGCCAATTGTTGGTATAAGGGAGGATGATCACGTCGATTGATTGAAATTTTCTTTGGGTTGATTCGTTGTTTGTTGTTGATTCATTGTTCTGATTGATTAAAGAGAACTGGGTTTTGTTTTAGAAGATGAGTTTCAATGATATGAGAGCCTCTGTTATACCGCCGCCTCTGCATTCCTATGGTTCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTTTCCTAGGAATGATCCATTTGATCCACAATCACAATTTGAAGTACAACAGCCTCCGTATAAAAGAGCTAGAAATTCTGAAGAAAACCCATCTAGTCCTATCTCTTATTCAAATCCCTCCTTAAATTCTAGGGGGCAACCACCAAATGCTCCAGTGAATAAAGGAATAAGTAATATCTTTTTCAAGACGAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGTAACTTTGCTCATGGTGTTGAAGATATGAGACAACCTCCACCAAATTGGCAAGAAATTGTTGGTATAAAGGAGGATGATCAATCAGTAAATAATTGGAATGATGATCAGAAGATAATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGAGAGGAGTGCCCCTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCAAAGTTTAGAGATGATTCAGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTGATGAATGGAAATGATTCTTCTAGTTATATTGAACCTAGCAGGGTAACTTCTTGTTCTGTTTCTGATGCTCTTCGAGCTAATGGGAATGTTAGGCCTTCATTCTGGAAGACAAAGTTATGCACCAAGTGGGAGATTACAGGCCATTGCCCCTTCGGTGACAAGTGCCATTTTGCTCATGGCCAATCTGGTATTCATAGCTCTTTTTCTTCTCTTTTTTGTCTTAATGGTCTAGGATTATAATTCTTTTATCTGAATGAAACCCAATAGTTGGCTTTAACATGTGAATTAGAGTTTTGATTAGCCATTTGATGAACTGACACTCATGATATGCCTTGAGTGATCTTTATTGTTAACATAACAATGTCAATCATTTGTTTCTTAATTTGTTTAGGCCATGTTCGGTAACATGATTTTGTGAAATCTTAGCCAATTTTTTTTTTAAAAGGGAGTTTTAAGAGCTACTTTCTTTGTTTTTGAAAACGTGAGGTAACAAAGCAAGAAATTTAGTGGTCATATGGATATTAGAAAACCAAGAACCAAATGGTTTCTGACAGTGGATCTAGTATTTATGTTGTGTCTTTTATGAAGCTTTGAACATTGTGATTAATGATTTGCATACTACTTTGAGAGATGCTGACTGATATTAATGAATCAGAGTTACAACTATATATTGGACGTGAGGGGGAAGTATCTACTGCTGCCCTCAACGTAAAGCCTCTAATTGTAGCCATGGAGGCATCTTCGAGTTTGACAACCAATGTAGTTCCATCCTCTGCCTTACCGGAGGGCCAGGAGAAGCCAAGTTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCTGATTGGCTCGATGATTTGCCTCTATCTCCAAGCTCAACAAGCAAAATGGAGGGTTGAGCCTTTTTTTCTTTTTCAGTTGAAGTTAAGTTTTTGAGTTGGTTTGCTGAGGGATTCAATTGATTAGTTACAATATGGGAGTTGGGTTGGTGGTGGTCTTTCTGAATTAGGGTGTAAAATTTTTTTGGTGAGAATTGATTGGGAATATGGATAGAAGAAGAGAGAGTGTGAGATATACCCTTATTGTTTGTTCTGTATTGTTCATTTATTTTGTTATTTCATATTTGTTCATATCCCATAGAAAAACTAGTTTGGATTTTTAATGAAATTCAATATATTTGAGCATTTCTTTCTTACAAATATTAGACTACATTATTTATTTTTCTTTAC

mRNA sequence

ATGAGTTTCAATGATATGAGAGCCTCTGTTATACCGCCGCCTCTGCATTCCTATGGTTCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTTTCCTAGGAATGATCCATTTGATCCACAATCACAATTTGAAGTACAACAGCCTCCGTATAAAAGAGCTAGAAATTCTGAAGAAAACCCATCTAGTCCTATCTCTTATTCAAATCCCTCCTTAAATTCTAGGGGGCAACCACCAAATGCTCCAGTGAATAAAGGAATAAGTAATATCTTTTTCAAGACGAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGTAACTTTGCTCATGGTGTTGAAGATATGAGACAACCTCCACCAAATTGGCAAGAAATTGTTGGTATAAAGGAGGATGATCAATCAGTAAATAATTGGAATGATGATCAGAAGATAATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGAGAGGAGTGCCCCTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCAAAGTTTAGAGATGATTCAGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTGATGAATGGAAATGATTCTTCTAGTTATATTGAACCTAGCAGGGTAACTTCTTGTTCTGTTTCTGATGCTCTTCGAGCTAATGGGAATGTTAGGCCTTCATTCTGGAAGACAAAGTTATGCACCAAGTGGGAGATTACAGGCCATTGCCCCTTCGGTGACAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTATATATTGGACGTGAGGGGGAAGTATCTACTGCTGCCCTCAACGTAAAGCCTCTAATTGTAGCCATGGAGGCATCTTCGAGTTTGACAACCAATGTAGTTCCATCCTCTGCCTTACCGGAGGGCCAGGAGAAGCCAAGTTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCTGATTGGCTCGATGATTTGCCTCTATCTCCAAGCTCAACAAGCAAAATGGAGGGTTGA

Coding sequence (CDS)

ATGAGTTTCAATGATATGAGAGCCTCTGTTATACCGCCGCCTCTGCATTCCTATGGTTCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTTTCCTAGGAATGATCCATTTGATCCACAATCACAATTTGAAGTACAACAGCCTCCGTATAAAAGAGCTAGAAATTCTGAAGAAAACCCATCTAGTCCTATCTCTTATTCAAATCCCTCCTTAAATTCTAGGGGGCAACCACCAAATGCTCCAGTGAATAAAGGAATAAGTAATATCTTTTTCAAGACGAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGTAACTTTGCTCATGGTGTTGAAGATATGAGACAACCTCCACCAAATTGGCAAGAAATTGTTGGTATAAAGGAGGATGATCAATCAGTAAATAATTGGAATGATGATCAGAAGATAATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGAGAGGAGTGCCCCTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCAAAGTTTAGAGATGATTCAGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTGATGAATGGAAATGATTCTTCTAGTTATATTGAACCTAGCAGGGTAACTTCTTGTTCTGTTTCTGATGCTCTTCGAGCTAATGGGAATGTTAGGCCTTCATTCTGGAAGACAAAGTTATGCACCAAGTGGGAGATTACAGGCCATTGCCCCTTCGGTGACAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTATATATTGGACGTGAGGGGGAAGTATCTACTGCTGCCCTCAACGTAAAGCCTCTAATTGTAGCCATGGAGGCATCTTCGAGTTTGACAACCAATGTAGTTCCATCCTCTGCCTTACCGGAGGGCCAGGAGAAGCCAAGTTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCTGATTGGCTCGATGATTTGCCTCTATCTCCAAGCTCAACAAGCAAAATGGAGGGTTGA

Protein sequence

MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENPSSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNVVPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG*

Homology

[Close]

BLAST of CsaV3_2G002700 vs. NCBI nr
Match: XP_004139420.1 (zinc finger CCCH domain-containing protein 39 [Cucumis sativus] >KGN60661.1 hypothetical protein Csa_019214 [Cucumis sativus])

HSP 1 Score: 727.2 bits (1876), Expect = 6.5e-206
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG
Sbjct: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of CsaV3_2G002700 vs. NCBI nr
Match: XP_008457806.1 (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >KAA0061589.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa] >TYJ97798.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa])

HSP 1 Score: 714.9 bits (1844), Expect = 3.3e-202
Identity = 340/347 (97.98%), Postives = 343/347 (98.85%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPISYSNPSLNSRG PPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNG+DSSSYIEPSR TSCSVSDALRANGNVRPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT+V
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           +PSSALPEGQ KPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of CsaV3_2G002700 vs. NCBI nr
Match: XP_038890424.1 (zinc finger CCCH domain-containing protein 39 [Benincasa hispida])

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 313/348 (89.94%), Postives = 325/348 (93.39%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYG-SNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEEN 60
           MSFNDMRASV+ PPLHSYG +NGD SGCWSQFPRNDPFDP SQFEVQQPP+KRARNSEEN
Sbjct: 1   MSFNDMRASVLSPPLHSYGAANGDVSGCWSQFPRNDPFDPHSQFEVQQPPFKRARNSEEN 60

Query: 61  PSSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDM 120
            SSPI YS+PSLNSR  PPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDM
Sbjct: 61  QSSPIPYSSPSLNSRVHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDM 120

Query: 121 RQPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAK 180
           RQPPPNWQEIVGI+EDDQSV+NWNDDQKIIQK+KLCRKFYNGEECPYGDRCNFLHEDPAK
Sbjct: 121 RQPPPNWQEIVGIREDDQSVSNWNDDQKIIQKLKLCRKFYNGEECPYGDRCNFLHEDPAK 180

Query: 181 FRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKT 240
           FRDD GRFRESSAISIGTTGTPLMNG+D SSY EPSR TS SVSDALRANGN RPSFWKT
Sbjct: 181 FRDDLGRFRESSAISIGTTGTPLMNGSD-SSYPEPSRATSSSVSDALRANGNARPSFWKT 240

Query: 241 KLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTN 300
           KLCTKWEITGHCPFGDKCHFAHGQSELQL +GREGE S+AALNVKPLIV MEASSSL T+
Sbjct: 241 KLCTKWEITGHCPFGDKCHFAHGQSELQLSLGREGEASSAALNVKPLIVTMEASSSLATS 300

Query: 301 VVPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
            VPSSAL +GQ KP LLKWKGPKKINRIYADWLDDLPLSPS TSKMEG
Sbjct: 301 -VPSSALLDGQVKPCLLKWKGPKKINRIYADWLDDLPLSPSPTSKMEG 346

[Close]

BLAST of CsaV3_2G002700 vs. NCBI nr
Match: KAG6599412.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 639.4 bits (1648), Expect = 1.8e-179
Identity = 305/347 (87.90%), Postives = 323/347 (93.08%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 233 MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 292

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR QPPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 293 SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 352

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 353 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 412

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NG+D SSY EP +  S SV DALRANGN RPSFWKTK
Sbjct: 413 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 472

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL+IGREGEVS  ALNVKPL+VAMEA SSL T+ 
Sbjct: 473 LCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATS- 532

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQ K SLLKWKGPKKINRIYADWLDDLPLSP+STS++EG
Sbjct: 533 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 577

[Close]

BLAST of CsaV3_2G002700 vs. NCBI nr
Match: KAG7030401.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 639.4 bits (1648), Expect = 1.8e-179
Identity = 305/347 (87.90%), Postives = 323/347 (93.08%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR QPPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NG+D SSY EP +  S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL+IGREGEVS  ALNVKPL+VAMEA SSL T+ 
Sbjct: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATS- 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQ K SLLKWKGPKKINRIYADWLDDLPLSP+STS++EG
Sbjct: 301 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 345

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 4.0e-81
Identity = 172/340 (50.59%), Postives = 210/340 (61.76%), Query Frame = 0


Query: 40  QSQFEVQ-QPPYKRARNSEENPSSPI------SYSNPSLNSRGQPPNAPVNKGISNIFFK 99
           QSQ   Q QP  KR R  ++N  +P       S SNP +     PP  PVNKG +NIF+K
Sbjct: 49  QSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPP--PVNKGTANIFYK 108

Query: 100 TRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIKEDDQS-------------- 159
           TRMCAKF+ G CRNG  CNFAHG+ED+RQPP NWQEIVG     Q               
Sbjct: 109 TRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERP 168

Query: 160 ------VNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSA 219
                  NNW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+ RESS 
Sbjct: 169 SLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSV 228

Query: 220 ISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTKLCTKWEITGHCP 279
           IS+G T       + +S+ IE +R  S  V   +   G V+  +WKT+LC K++ITG CP
Sbjct: 229 ISVGATAAD-QPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCP 288

Query: 280 FGDKCHFAHGQSELQLYIGR-EGEV--STAALNVKPLIVAME--ASSSLTTNVVPSSAL- 339
           FGDKCHFAHGQ+EL   +GR EGE   + A++N + ++ A E  A   +T     SS L 
Sbjct: 289 FGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLN 348

Query: 340 PEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 347
            EG+ K  LLKW   KKINRIY DW+DDLP+   ST  +E
Sbjct: 349 EEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-46
Identity = 104/301 (34.55%), Postives = 151/301 (50.17%), Query Frame = 0


Query: 79  NAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIKEDDQS 138
           N   ++ I  +FFKT++C KF+ G C    +CNFAHG+E++R+PPPNWQEIV   E+   
Sbjct: 76  NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATE 135

Query: 139 VNNWNDDQKIIQ-----------------------KMKLCRKFYNGEECPYGDRCNFLHE 198
               +    +                         K + C+KFY  E CPYGD C FLH 
Sbjct: 136 AREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLH- 195

Query: 199 DPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPS 258
                 D+  + RES AIS+    +P + G         +   + S S A       +PS
Sbjct: 196 ------DEQSKARESVAISL----SPSVGGGGGGGSYNSAAAAAASASAAAGNGPMQKPS 255

Query: 259 FWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGR----EGEVSTAALNVKPLIVAME 318
            WKT++C KWE+TG+CPFG KCHFAHG +EL  Y G     +   + A  + K  +V+ +
Sbjct: 256 NWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAK 315

Query: 319 A---SSSLTTNVVPSSAL---------------PEGQEKPSLLKWKGPKKINRIYADWLD 335
           A   +++ +T V+P + +                 GQ +  + KWKGP KI+RIY DW+D
Sbjct: 316 APAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWID 365

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-46
Identity = 129/387 (33.33%), Postives = 180/387 (46.51%), Query Frame = 0


Query: 12  PPPLHSYGSNGDA---------SGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENPSS 71
           PPP + + + GD+         +  W+  P N   D         PP K+ R S   PSS
Sbjct: 21  PPPDNWFPNLGDSAVWATEDDYNRAWAMNPDNTSGDNNG------PPNKKTRGS---PSS 80

Query: 72  PISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQP 131
             + +  + ++R         K I  +FFKT++C KF+ G C    +CNFAH VE++R+P
Sbjct: 81  SSATTTSAASNR--------TKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRP 140

Query: 132 PPNWQEIVGIKEDDQSVNNWNDDQKIIQ----------------------KMKLCRKFYN 191
           PPNWQEIV   E+++S         +++                      K + C+KFY 
Sbjct: 141 PPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYT 200

Query: 192 GEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSC 251
            E CPYG+ C FLH       D++ R RES AIS+G  G     G  S         +S 
Sbjct: 201 EEGCPYGESCTFLH-------DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 260

Query: 252 SVSDALRANGN--------VRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLY--- 311
           +V       G+        ++PS WKT++C KWEITG+CPFG KCHFAHG +EL  +   
Sbjct: 261 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 320

Query: 312 ----IGREG-----EVSTAALNVKPLI---------VAMEASSSLTTNVVPSSALPEGQE 336
                G++G     +      N K L          V   A +S  T V    A     +
Sbjct: 321 LVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQ 380

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-25
Identity = 83/302 (27.48%), Postives = 124/302 (41.06%), Query Frame = 0


Query: 56  SEENPSSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLC-RNGASCNFAH 115
           +E++ S   + ++    S  +   +  +  I   FFKT++C KF+ G C  + +SC+FAH
Sbjct: 37  TEDDYSRVWAINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAH 96

Query: 116 GVEDMR---QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCN 175
             E++R    PPPNWQE V                                         
Sbjct: 97  SAEELRLPPPPPPNWQETV----------------------------------------- 156

Query: 176 FLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGN 235
                      ++ R RES A+S+G  G                     +V+  L++   
Sbjct: 157 ----------TEASRNRESFAVSLGPRG---------------------NVAQTLKSPN- 216

Query: 236 VRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLYIG------------------RE 295
                WKT++C KW+ TG+CPFG  CHFAHG SEL  + G                  + 
Sbjct: 217 -----WKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQR 251

Query: 296 GEVSTAALNVKPLIVAMEASSSLTTNVVPSSALPEGQEKPSLLKWKGPKKINRIYADWLD 336
           G+V T    V P + +   SS++T         P G    +  KWKGP KI+R+Y DW+D
Sbjct: 277 GQVDTVTSLVSPGVSSQRTSSAVTQK-------PNGVR--TQRKWKGPDKISRVYGDWID 251

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot
Match: Q7XPK1 (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-10
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 151 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSS 210
           K+K C KF++   CP+G+ C+F H  P  ++        +  +++G    P         
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ------AVAKTLNLGNPAVP--------- 98

Query: 211 YIEPSRVTSCSVSDALRANGNVRP-SFWKTKLCTKWEITGHCPFGDKCHFAHGQSEL 267
              P+R           A GN  P S  KT++CTK+     C FGDKCHFAHG+ EL
Sbjct: 99  --APARAPMDHA-----AGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL
Match: A0A0A0LKX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.1e-206
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG
Sbjct: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL
Match: A0A5A7V7E5 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00080 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.6e-202
Identity = 340/347 (97.98%), Postives = 343/347 (98.85%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPISYSNPSLNSRG PPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNG+DSSSYIEPSR TSCSVSDALRANGNVRPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT+V
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           +PSSALPEGQ KPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL
Match: A0A1S3C7N3 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103497405 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.6e-202
Identity = 340/347 (97.98%), Postives = 343/347 (98.85%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPISYSNPSLNSRG PPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNG+DSSSYIEPSR TSCSVSDALRANGNVRPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT+V
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           +PSSALPEGQ KPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL
Match: A0A6J1G2M8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111450240 PE=4 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.5e-179
Identity = 306/347 (88.18%), Postives = 322/347 (92.80%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR QPPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NG+D SSY EP +  S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL IGREGEVS  ALNVKPL+VAMEA SSL T+ 
Sbjct: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATS- 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQ K SLLKWKGPKKINRIYADWLDDLPLSPSSTS++EG
Sbjct: 301 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL
Match: A0A6J1KJ53 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111493694 PE=4 SV=1)

HSP 1 Score: 631.3 bits (1627), Expect = 2.3e-177
Identity = 303/347 (87.32%), Postives = 317/347 (91.35%), Query Frame = 0


Query: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60
           MSFNDMR SVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFE QQPP+KRAR  EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR QPPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPLMNG+D SSY EP +  S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL IGREGEVS  ALNVKPL+VAMEA SS     
Sbjct: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSS----- 300

Query: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 348
           VPSSALPEGQ K SLLKWKGPKKINRIYADWLDDLPLSPSSTS++EG
Sbjct: 301 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 341

[Close]

BLAST of CsaV3_2G002700 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 303.1 bits (775), Expect = 2.8e-82
Identity = 172/340 (50.59%), Postives = 210/340 (61.76%), Query Frame = 0


Query: 40  QSQFEVQ-QPPYKRARNSEENPSSPI------SYSNPSLNSRGQPPNAPVNKGISNIFFK 99
           QSQ   Q QP  KR R  ++N  +P       S SNP +     PP  PVNKG +NIF+K
Sbjct: 49  QSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPP--PVNKGTANIFYK 108

Query: 100 TRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIKEDDQS-------------- 159
           TRMCAKF+ G CRNG  CNFAHG+ED+RQPP NWQEIVG     Q               
Sbjct: 109 TRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERP 168

Query: 160 ------VNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSA 219
                  NNW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+ RESS 
Sbjct: 169 SLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSV 228

Query: 220 ISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTKLCTKWEITGHCP 279
           IS+G T       + +S+ IE +R  S  V   +   G V+  +WKT+LC K++ITG CP
Sbjct: 229 ISVGATAAD-QPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCP 288

Query: 280 FGDKCHFAHGQSELQLYIGR-EGEV--STAALNVKPLIVAME--ASSSLTTNVVPSSAL- 339
           FGDKCHFAHGQ+EL   +GR EGE   + A++N + ++ A E  A   +T     SS L 
Sbjct: 289 FGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLN 348

Query: 340 PEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 347
            EG+ K  LLKW   KKINRIY DW+DDLP+   ST  +E
Sbjct: 349 EEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of CsaV3_2G002700 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.8e-47
Identity = 129/387 (33.33%), Postives = 180/387 (46.51%), Query Frame = 0


Query: 12  PPPLHSYGSNGDA---------SGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENPSS 71
           PPP + + + GD+         +  W+  P N   D         PP K+ R S   PSS
Sbjct: 21  PPPDNWFPNLGDSAVWATEDDYNRAWAMNPDNTSGDNNG------PPNKKTRGS---PSS 80

Query: 72  PISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQP 131
             + +  + ++R         K I  +FFKT++C KF+ G C    +CNFAH VE++R+P
Sbjct: 81  SSATTTSAASNR--------TKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRP 140

Query: 132 PPNWQEIVGIKEDDQSVNNWNDDQKIIQ----------------------KMKLCRKFYN 191
           PPNWQEIV   E+++S         +++                      K + C+KFY 
Sbjct: 141 PPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYT 200

Query: 192 GEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSC 251
            E CPYG+ C FLH       D++ R RES AIS+G  G     G  S         +S 
Sbjct: 201 EEGCPYGESCTFLH-------DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 260

Query: 252 SVSDALRANGN--------VRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLY--- 311
           +V       G+        ++PS WKT++C KWEITG+CPFG KCHFAHG +EL  +   
Sbjct: 261 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 320

Query: 312 ----IGREG-----EVSTAALNVKPLI---------VAMEASSSLTTNVVPSSALPEGQE 336
                G++G     +      N K L          V   A +S  T V    A     +
Sbjct: 321 LVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQ 380

[Close]

BLAST of CsaV3_2G002700 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-26
Identity = 83/302 (27.48%), Postives = 124/302 (41.06%), Query Frame = 0


Query: 56  SEENPSSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLC-RNGASCNFAH 115
           +E++ S   + ++    S  +   +  +  I   FFKT++C KF+ G C  + +SC+FAH
Sbjct: 37  TEDDYSRVWAINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAH 96

Query: 116 GVEDMR---QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCN 175
             E++R    PPPNWQE V                                         
Sbjct: 97  SAEELRLPPPPPPNWQETV----------------------------------------- 156

Query: 176 FLHEDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGN 235
                      ++ R RES A+S+G  G                     +V+  L++   
Sbjct: 157 ----------TEASRNRESFAVSLGPRG---------------------NVAQTLKSPN- 216

Query: 236 VRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLYIG------------------RE 295
                WKT++C KW+ TG+CPFG  CHFAHG SEL  + G                  + 
Sbjct: 217 -----WKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQR 251

Query: 296 GEVSTAALNVKPLIVAMEASSSLTTNVVPSSALPEGQEKPSLLKWKGPKKINRIYADWLD 336
           G+V T    V P + +   SS++T         P G    +  KWKGP KI+R+Y DW+D
Sbjct: 277 GQVDTVTSLVSPGVSSQRTSSAVTQK-------PNGVR--TQRKWKGPDKISRVYGDWID 251

[Close]

BLAST of CsaV3_2G002700 vs. TAIR 10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-06
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDA-----LRANGN---- 240
           R++  R     +IS+ + G   +N    +S ++ S+++S SVS +     ++  G     
Sbjct: 164 RNNQERNSLPKSISVRSQGYLKINHGFEASDLQTSQLSSNSVSSSQKVCVVQTKGEREAL 223

Query: 241 ----VRPSFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQ 268
                R    KT+LC KW+ TG C +GD C FAHG  EL+
Sbjct: 224 ELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263

[Close]

BLAST of CsaV3_2G002700 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-05
Identity = 28/107 (26.17%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 92  KTRMCAKF-KLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIKEDDQSVNNWNDDQKIIQ 151
           KT +C K+ + G C  G  C FAHG++++R    + +                       
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPR----------------------Y 283

Query: 152 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGT 198
           K ++CR    G+ CPYG RC+F H    + +  +  F+  S++ + T
Sbjct: 284 KTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSSLKLIT 308

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139420.1	6.5e-206	100.00	zinc finger CCCH domain-containing protein 39 [Cucumis sativus] >KGN60661.1 hypo...	[more]
XP_008457806.1	3.3e-202	97.98	PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >KA...	[more]
XP_038890424.1	1.9e-181	89.94	zinc finger CCCH domain-containing protein 39 [Benincasa hispida]	[more]
KAG6599412.1	1.8e-179	87.90	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
KAG7030401.1	1.8e-179	87.90	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]

BLAST of CsaV3_2G002700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	4.0e-81	50.59	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	2.4e-46	34.55	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LQM3	5.4e-46	33.33	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5PP65	9.0e-25	27.48	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7XPK1	1.3e-10	33.33	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CsaV3_2G002700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKX6	3.1e-206	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1	[more]
A0A5A7V7E5	1.6e-202	97.98	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C7N3	1.6e-202	97.98	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1G2M8	1.5e-179	88.18	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KJ53	2.3e-177	87.32	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CsaV3_2G002700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	2.8e-82	50.59	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	3.8e-47	33.33	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	6.4e-26	27.48	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G66810.1	1.1e-06	32.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	2.1e-05	26.17	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 149..176 e-value: 4.1E-5 score: 33.0 coord: 236..263 e-value: 6.9E-8 score: 42.2 coord: 90..116 e-value: 0.0021 score: 27.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 237..263 e-value: 5.8E-11 score: 42.0 coord: 91..115 e-value: 3.5E-5 score: 23.6 coord: 150..174 e-value: 1.4E-7 score: 31.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 149..177 score: 15.403383
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 90..117 score: 13.797847
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 236..264 score: 16.088787
None	No IPR available	GENE3D	4.10.1000.10		coord: 230..268 e-value: 7.4E-16 score: 59.2 coord: 85..121 e-value: 9.2E-10 score: 39.7 coord: 149..178 e-value: 2.7E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..80
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 1..336
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..336
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 233..268
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 149..176
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 89..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G002700.1	CsaV3_2G002700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding