CsaV3_2G002190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G002190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	chr2: 838568 .. 841615 (+)
RNA-Seq Expression	CsaV3_2G002190
Synteny	CsaV3_2G002190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACGACACCGTTTGGAACTTGAAAGCTTGACAAAACCCTTCTCTAATGCTTTGAACCCCAATTTTCGTTACACTGCCTCAAAGCTTCACTCAGAACGAAGAAATCTCCAATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTAGACTTGTCTATTCCCTCCATTTTCAATACCATTCATCTTATAATCATAGAATCATCAGTTACAGAAAGAAATTCGGTTCAATTCTTAACCGTGGAATAGATTTTTACCACAGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTTTGCTTAAGTTTCTTCTTGCATCTGGGTCTTGTGAATGCTGATGATTCTCCATTATTGTATGTGCTCGAGGAATGTAGCCAAAGAAGCATTCCAAATATCCTTTTGTTTGTTCACACTTCATAGAATTTTTTTCTCTCGAAATAATGTGGGTTATTTTTTTCATTTTTAGGATGATCATAGTTTGGGTCTAGTTCAATGCATATGTCTTGCGGAATTCTAGTACGATTGAGTTAATCGGCATGGTGTTTGCCTGTACTACTAGAATTGTCATGACCTTTGAATTGTGATTAGAGTCACATAAATGAAAATGATGGATGGAATACATCACTTTGATTGGTGTATGAAGGCACATGCAATCAACTTTAGTATTTGAACGAAAATTTAATATAACTGATCATACATACGAAGTAGCGATAGTTGATTTCACAGGTTTAGCATTAGTCTAGTTTTTCAACACCTTAACTGTGGTCGATTACTTTTATGTGTTGACTCTTCTAGTTTTTCACCAAGCTTCAAAGTAGTATCAACTATCATCAAGTGATGTTGTTTTCAACTAGTTGATGATTAAGAATATTTCTGTTGTTCAATTTATGAACCCTTACAATAAATTGTGATGCTATCTCAACATTAGTGTCATTGTATCATTTTTATTCTATCTATTATTACCACTGTCTGAAATGTGAGTCCCGTACTAATTCTATCTATTATTACCGTATCTTAGTTATTTTCAATGGATATCACTTGATCCTACACTCCACAGTACTAGAGAACTTAGAATTAATGGTTGTCATGACTCATGGGTCGTCTCTAAACAAGCTTTTGGTGGGTGCAAGTGTTTGGACTATTTGGCCGGAAAGTATTCAAAGAAATGGGATTGTTGAACATTTATGTTTTCTCCACCTGCAATAGACTTTTGAACCTTTTGAACCTCTTTTGTTATTTGAGTTATTGTAGTTTTTATTCAATTGGTGTTAAAGTTAAGAGCAGGGAGAGTTCCTTTTTTGTGTGGGCGTTTAATTTGTGGCTGTGCTCTTCATCCCTCACCACCCCCCCCCCCCCCCCCCCCCCCCCAATGTAAAATCCTCCTTTGGACAAATACCTTCTTCATTCAAATGTTGTCACATCTCATGGTGACAATAAAACTATCTTTTGTTCTATTGAAGAGAGTAATGTATTTGATATCTTTTGTTCTCTGTAAAAAAAAACATTACTAATTTCCAATGGGATGATACCCTAGAAGTTGGTAGCATAATTGTTTATTACTCCGCTTGCTCCTGCACCCTCAAATGGTATATGCTTGTTCGGTTGGCTATGAGGATAACAACTCTTTTGTTGTTGTTCATTCTTTGCTGGTTCACTGGGAAGTTTTGGGGGTTGCTATTTTGTTTTTGTGGTCTTGGGTAGCTCTTCCAAAAACGAAGCTGTATACTTCAGATGCTACTACGTTCAAAATTCAGAAACCAGGCTAAATCAATCTAGACTAATGCGATATTGATTATCTCTGTGTGAGGCTTGGAGAGTGAAAATAGTAGGAATTGTTGCAAAAATCGAGGTAATCAAATTGTTGGCATCTAAACTTCAGTTAGATGTCTAGTAGCCTTTCTCATCCCTTTTGTTTTCTTTACAGTATTTGTAATACAGAGTTTATCTCGAGAAAAGTTACTATTTTTGTCTTCCCAATAATAAACACTAATGAAAACTTCTGTGCTTGACAACGAGAAGAGTAAGAGTGTGAAAGTGCAGGCTAAAGAAAAACATCTTGGGGCGTTTGTGGCACTAGTTCAGCATCTTCAAGCCTAGGTTTAATGTGTTTAGGGGTTTAGGTTGATGGTTAGGGAAGTCGTTGGGGTTCAGGTTTTGGAAGCATAGATTTAAATCAGTGTGAACCGTGAGGGGGTTTGAATAGTGGGTTATTGTTCAAACTCGTTTGTTCCTCTTATAAAATTCGGTTTTGAAAACTCCTCATTCTAAACATTGTTTAGGCTTGGATAGCTAAACCCATGTCCCAAATGCTTCTTTACAGCTGTAACGTTATATTATCTTTGCCCTTTGGTCACAAAATGACTTCTGAGTACTAACATTAATTTTTGTTAATTTCATTCATGGGAGAAAGTTATGCATCCAATTTTGTAGTTCATCATTTCAAGTAGTTTCATGCAAGACAAGAACCCTCTTTGATGCTGTTTTATCTTTCCTGCAGGTATTTCAATGCCTTTATGACAGGCTTTGCTATGCAGGAACTTGTTCTTTGTAGCTTTCTTTTGATTGACAATTGGGGTTTCTTCTTACTTCTAGTTCTTTACAATCTACAAGAATGTAAACCTAAATTATTGCCTCTGATTTTCTTTTTGGTCCTAAATTGGATGAGGTTTAAAGTTAAATTTCATCTTGTAATGAATCCAAGTGATTGATATACAACTTTCATGATTGTTGAATTTGTTACCCTTGGAAAAGATGATGTAACGATGCTTTGAAGGACAATCTTGTTACAAATAGAATGGTTATGGATTCTTCCTCTAGGATTCTTTTGAT

mRNA sequence

ATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATTTCAATGCCTTTATGA

Coding sequence (CDS)

ATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATTTCAATGCCTTTATGA

Protein sequence

MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL*

Homology

[Close]

BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_004139345.1 (uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical protein Csa_019508 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_008458440.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 9.4e-41
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. NCBI nr
Match: KAA0061549.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGM 95

[Close]

BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_008458447.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 93

[Close]

BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 4.8e-37
Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASLK VSRLSSRLQSLAPKFNKRSS SEL  FKS CQSQPS ASTSRL CTSRLPVELS
Sbjct: 1   MASLKTVSRLSSRLQSLAPKFNKRSSYSELSPFKSPCQSQPSTASTSRLPCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A1S3C7U8 (uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGM 95

[Close]

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A1S3C7Z3 (uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSELFS KSTCQSQPSAASTSRLHCTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 93

[Close]

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MASL+AVSRLSSRLQSLAPK NKRS SSEL  FKS CQSQPSAASTSR+ CTSRLP+ELS
Sbjct: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISMPL 99

[Close]

BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
           MAS   + RLSS++ SL  K +K  ++  + S  S  +S   +++TSR++ + RLPVELS
Sbjct: 1   MASSSKICRLSSKIHSLTQKLSK--TNVHISSLPSPIKSSSPSSATSRINQSFRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
              S++PLHSAIA+ARLISSL++ES+ WGLVPQGISMPL
Sbjct: 61  CCLSMLPLHSAIASARLISSLSVESKSWGLVPQGISMPL 97

[Close]

BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-16
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKF-NKRSSSSELFS-FKSTCQSQPSAASTSRLHCTSRLPVE 60
           MAS + + R SSRL+SL     NK ++ S L S  KS   + PS+A++ RL+ +SRLPVE
Sbjct: 1   MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKS---ASPSSATSCRLNRSSRLPVE 60

Query: 61  LSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL 100
           LS   S++PLHSAIA++RL+SSL++ES+ WGLVPQG+S+PL
Sbjct: 61  LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQGLSLPL 95

[Close]

BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60
          MAS   + RLSS++ SL  K +K  ++  + S  S  +S   +++TSR++ + RLPVELS
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSK--TNVHISSLPSPIKSSSPSSATSRINQSFRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGIS 97
             S++PLHSAIA+ARLISSL++ES+ WGLVPQG S
Sbjct: 61 CCLSMLPLHSAIASARLISSLSVESKSWGLVPQGQS 94

[Close]

BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 24  RSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELSSQGSLMPLHSAIAAARLISSLTI 83
           R+ + +  + K T  S P A+ +  +   SR+   L S  +++PLHSA+A+ARL SS+  
Sbjct: 21  RTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSVETMIPLHSAVASARLRSSIAA 80

Query: 84  ESQGWGLVPQGISMPL 100
           +S  W L+ QG++ PL
Sbjct: 81  DSSCWSLLSQGLATPL 96

[Close]

BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 24 RSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELSSQGSLMPLHSAIAAARLISSLTI 83
          R+ + +  + K T  S P A+ +  +   SR+   L S  +++PLHSA+A+ARL SS+  
Sbjct: 21 RTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSVETMIPLHSAVASARLRSSIAA 80

Query: 84 ESQGWGLVPQGISMP 99
          +S  W L+ Q + +P
Sbjct: 81 DSSCWSLLSQELGVP 95

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139345.1	5.0e-42	100.00	uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical ...	[more]
XP_008458440.1	9.4e-41	97.98	PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]	[more]
KAA0061549.1	5.7e-38	96.84	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protei...	[more]
XP_008458447.1	3.7e-37	97.85	PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]	[more]
XP_038889658.1	4.8e-37	92.93	uncharacterized protein LOC120079520 [Benincasa hispida]	[more]

BLAST of CsaV3_2G002190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKT5	2.4e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1	[more]
A0A1S3C7U8	4.5e-41	97.98	uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7V7B3	2.8e-38	96.84	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C7Z3	1.8e-37	97.85	uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1G399	2.0e-36	89.90	uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]

BLAST of CsaV3_2G002190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55205.1	2.4e-18	53.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13674.1	2.9e-16	54.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.2	1.1e-15	51.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.1	2.7e-06	36.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.2	5.2e-05	34.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G002190.1	CsaV3_2G002190.1	mRNA