CsaV3_2G001330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G001330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 312504 .. 313899 (+)
RNA-Seq ExpressionCsaV3_2G001330
SyntenyCsaV3_2G001330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGGTACTGGAAGCGTCTTTGAAGCTTTATTAGGTGTGGCACTCGACTTGCTTGTTTCTGCCAGTTGAGTTGAATATTCTTATTTTGCTTCATGCTTTTCTACTTTGTTTTCTGCTACGTGGAAGCTTTGGATTTTTAAGGACAGTTGCACCGATTGAGTACATAACAGTATTAAGAATGAAATTTTCCAGCTCCTTATTTATTTATTATTTCTATTACACGTTAGATGCAAATCACAACTTCAAATTTCAATTGAAACATAATCCAAATTTTGGTTCAGTAATATACACACGATTTTATGTTATTTTATGTTATTTTAGTTTACGATCCTTCATACTTCAGAGTTTTTAAGACTGCTTTGTATTGTATGTTAGAATTTTGGAGTGTCTGTATTGTATTGTAATTCAAAATCTATGTTAGAATTGAGTTGAACAATTTGAATTTGTTATGCAATTTTCAATCCAACCCTTTTTTTTATTGTTTACAATTTTATATTTTTCATTTTCGATTACTCAAACATTTCTCTCATTTCTAGTAGACTAAATTCTTAGAGTAATTTTGTTTGGTTCCTATTTGTTAATTATTTGCTACCATTTTATTATTAAATGAAATTGTAAATTTTGAAACATAAGAGAAATTGTAGCATGCTAAAACCTATGAATTAAAAATTTAAGGACCCAAGCTGTAATATTTTGATACAAACTAAAATTAAAGAAATGTACTCAATTTTGAAAAAGGAAAGACAGAAAATGAAATTGTTTAATAGTTAATAAACAGGGCCTAAAAATATAAAATTTGAAAATCAGCGACTAAATAATAATTAGATTAAAACTTGGGACCAAAAATCAATTTCCCCTCCATTTTATATTAGAAAAAAACACTACTTTCCCTCTTTTGCAAATAATTAATTGAAAAAAAAAAAAAAAAAAACCCTAGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACGTAAGCATTCTTCTGTATCGAGGTCCACACACAAGTCTTCTGCAACTCCCTCCATCTCCAAGCCACTCGTTGCTTGTTGAGTTTGATCTTAGGGTTTAACGAACTTTGGCTAGGGTTTTATTTGTGTTTGTTTAATTTTTTTTCCCTGTGTTTGTTGGGCTGTTTTAGTTATATTCTGCTCATGTTCCGTTTCCATTTCTCTCTCTTTTAATTGTCTCAGCTTCATTCTACTGTTAG

mRNA sequence

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Coding sequence (CDS)

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Protein sequence

MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFSISASTSTSASRHRILPSFYC*
Homology
[Close]
BLAST of CsaV3_2G001330 vs. NCBI nr
Match: KGN60523.1 (hypothetical protein Csa_019243 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

[Close]
BLAST of CsaV3_2G001330 vs. ExPASy TrEMBL
Match: A0A0A0LFQ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

The following BLAST results are available for this feature:
BLAST of CsaV3_2G001330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60523.13.3e-36100.00hypothetical protein Csa_019243 [Cucumis sativus][more]
BLAST of CsaV3_2G001330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G001330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFQ61.6e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1[more]
BLAST of CsaV3_2G001330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G001330.1CsaV3_2G001330.1mRNA