CsaV3_2G001220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G001220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Elf4 domain-containing protein
Location	chr2: 266564 .. 266866 (+)
RNA-Seq Expression	CsaV3_2G001220
Synteny	CsaV3_2G001220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGGAGACATTGTCAAGAGGAGAAATTGATGGGAAAATGGTGCAGAGATTTCAAAAGAATTTCGTTCAAGTACAGAACATTTTGGAGCAAAACAGAATGTTGATCAATGAAATAAACCAAAATCAGGAGTCGAGAATGGCGGGTAATGTGAGCAGAAACGTGGGTCTGATTCGAGAGCTGAACAACAACATCAGAAGAGTTGTTGATTTATATGCTGATCTCTCCACTTCCTTCACCAAATCCAACGAACATGGAGACTCCGCGGCCAAGCCTGGCTACAAGCGCAACCGCCCATAG

mRNA sequence

ATGGAGGGGGAGACATTGTCAAGAGGAGAAATTGATGGGAAAATGGTGCAGAGATTTCAAAAGAATTTCGTTCAAGTACAGAACATTTTGGAGCAAAACAGAATGTTGATCAATGAAATAAACCAAAATCAGGAGTCGAGAATGGCGGGTAATGTGAGCAGAAACGTGGGTCTGATTCGAGAGCTGAACAACAACATCAGAAGAGTTGTTGATTTATATGCTGATCTCTCCACTTCCTTCACCAAATCCAACGAACATGGAGACTCCGCGGCCAAGCCTGGCTACAAGCGCAACCGCCCATAG

Coding sequence (CDS)

ATGGAGGGGGAGACATTGTCAAGAGGAGAAATTGATGGGAAAATGGTGCAGAGATTTCAAAAGAATTTCGTTCAAGTACAGAACATTTTGGAGCAAAACAGAATGTTGATCAATGAAATAAACCAAAATCAGGAGTCGAGAATGGCGGGTAATGTGAGCAGAAACGTGGGTCTGATTCGAGAGCTGAACAACAACATCAGAAGAGTTGTTGATTTATATGCTGATCTCTCCACTTCCTTCACCAAATCCAACGAACATGGAGACTCCGCGGCCAAGCCTGGCTACAAGCGCAACCGCCCATAG

Protein sequence

MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP*

Homology

[Close]

BLAST of CsaV3_2G001220 vs. NCBI nr
Match: KGN60512.1 (hypothetical protein Csa_019281 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.4e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60
           MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR
Sbjct: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60

Query: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP
Sbjct: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 100

[Close]

BLAST of CsaV3_2G001220 vs. NCBI nr
Match: KAA0061471.1 (protein ELF4-LIKE 3-like [Cucumis melo var. makuwa] >TYK10803.1 protein ELF4-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60
           M+GETLSRGEIDGKMVQRFQ NFVQVQNILEQNRMLINEINQNQESRMAG VSRNVGLIR
Sbjct: 1   MDGETLSRGEIDGKMVQRFQTNFVQVQNILEQNRMLINEINQNQESRMAGKVSRNVGLIR 60

Query: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           ELNNNIRRVVDLYADLSTSFT S EHGDSAAKPGYKRNRP
Sbjct: 61  ELNNNIRRVVDLYADLSTSFTNSIEHGDSAAKPGYKRNRP 100

[Close]

BLAST of CsaV3_2G001220 vs. NCBI nr
Match: XP_038890489.1 (protein ELF4-LIKE 3-like [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MEGETLSRG-------EIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVS 60
           MEGETLS G       E+DGKMVQ FQKNFVQV+NIL+QNR+LINEINQN ES+M  N++
Sbjct: 1   MEGETLSSGGIGKGIREMDGKMVQTFQKNFVQVENILDQNRLLINEINQNHESKMPHNLT 60

Query: 61  RNVGLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           RNVGLIRELNNNIRRVVDLYADLSTSFTKS + GDSA KPG+KRNRP
Sbjct: 61  RNVGLIRELNNNIRRVVDLYADLSTSFTKSIDDGDSAVKPGHKRNRP 107

[Close]

BLAST of CsaV3_2G001220 vs. NCBI nr
Match: XP_022946747.1 (protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022999232.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999233.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999234.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999235.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >KAG7030507.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 8.0e-32
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MEGETLSRG------EIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSR 60
           MEGETLS G      ++DGKM Q FQKNFVQVQNIL+QNR+LINEINQN ES+M  N++R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           NVGLIRELNNNIRRVVDLYA LS SFTKS E    G+SAAKPG+KRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 109

[Close]

BLAST of CsaV3_2G001220 vs. NCBI nr
Match: XP_023521403.1 (protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546933.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546934.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MEGETLSRG------EIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSR 60
           MEGETLS G      ++DGKM   FQKNFVQVQNIL+QNR+LINEINQN ES+M  N++R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAHTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           NVGLIRELNNNIRRVVDLYA LS SFTKS E    G+SAAKPG+KRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 109

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-25
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   MEGETLSR-----GEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRN 60
           MEG+T+SR      ++DGK++Q F+K+FVQVQNIL+ NR+LINEINQN ES++  N+ RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           VGLIRELNNN+RRV  LY DLS +F+KS E    GDS+   G +R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRP 108

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-22
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEGETLS----RGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
          MEG+ LS    R  +DGK++Q FQK+FV VQ+IL+QNR+LINEINQN ES+   N+ RNV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61 GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
          GLI+ELNNNIRRV  LY DLS SF +S +        G
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSG 98

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-22
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1   MEGETLS----RGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
           MEG+  S    R ++DGK++Q FQK+FVQVQ+IL+QNR+LINEINQN ES+ A ++ RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
           GLIRELNNNIR V  LY DLS SF +S +        G
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTG 102

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 4   ETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIRELN 63
           E   +GE D  M +   +NF QVQ++L++NR LI ++N N +SRMA N+S+NV LI+ELN
Sbjct: 15  EEAEQGE-DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELN 74

Query: 64  NNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
            NI +VV++Y+DL+TSF+ S  HG      G
Sbjct: 75  GNISKVVNMYSDLNTSFS-SGFHGGKNGHDG 103

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-10
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 12  DGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIRELNNNIRRVVD 71
           D ++       F + Q  L+QNR LI  +N+N  SR+  NVSRNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 72  LYADLSTSFTKSNEHGDSAAKPG 95
           +Y+DLS +F K  +      K G
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDG 116

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL
Match: A0A0A0LIL2 (Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000210 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60
           MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR
Sbjct: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60

Query: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP
Sbjct: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 100

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL
Match: A0A5D3CFW0 (Protein ELF4-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001190 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.9e-43
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEGETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIR 60
           M+GETLSRGEIDGKMVQRFQ NFVQVQNILEQNRMLINEINQNQESRMAG VSRNVGLIR
Sbjct: 1   MDGETLSRGEIDGKMVQRFQTNFVQVQNILEQNRMLINEINQNQESRMAGKVSRNVGLIR 60

Query: 61  ELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           ELNNNIRRVVDLYADLSTSFT S EHGDSAAKPGYKRNRP
Sbjct: 61  ELNNNIRRVVDLYADLSTSFTNSIEHGDSAAKPGYKRNRP 100

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL
Match: A0A6J1KJ14 (protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MEGETLSRG------EIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSR 60
           MEGETLS G      ++DGKM Q FQKNFVQVQNIL+QNR+LINEINQN ES+M  N++R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           NVGLIRELNNNIRRVVDLYA LS SFTKS E    G+SAAKPG+KRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 109

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL
Match: A0A6J1G4K6 (protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MEGETLSRG------EIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSR 60
           MEGETLS G      ++DGKM Q FQKNFVQVQNIL+QNR+LINEINQN ES+M  N++R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           NVGLIRELNNNIRRVVDLYA LS SFTKS E    G+SAAKPG+KRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 109

[Close]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL
Match: A0A1U7WX74 (protein ELF4-LIKE 3-like OS=Nicotiana sylvestris OX=4096 GN=LOC104232936 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.2e-30
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MEGETLSR----GEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
           MEG+TLS      +IDGK+VQ FQKNFVQVQNIL+QNR+LINEINQNQES++  N+SRNV
Sbjct: 1   MEGDTLSGLGNVTQIDGKVVQTFQKNFVQVQNILDQNRLLINEINQNQESKIPDNLSRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPGYKRNRP 101
           GLIRELNNNIRRVVDLYADLSTSFTKS ++       G+KR+RP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDNSSEGDSSGHKRSRP 104

[Close]

BLAST of CsaV3_2G001220 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   MEGETLSR-----GEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRN 60
           MEG+T+SR      ++DGK++Q F+K+FVQVQNIL+ NR+LINEINQN ES++  N+ RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VGLIRELNNNIRRVVDLYADLSTSFTKSNE---HGDSAAKPGYKRNRP 101
           VGLIRELNNN+RRV  LY DLS +F+KS E    GDS+   G +R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRP 108

[Close]

BLAST of CsaV3_2G001220 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEGETLS----RGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
          MEG+ LS    R  +DGK++Q FQK+FV VQ+IL+QNR+LINEINQN ES+   N+ RNV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61 GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
          GLI+ELNNNIRRV  LY DLS SF +S +        G
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSG 98

[Close]

BLAST of CsaV3_2G001220 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEGETLS----RGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
          MEG+ LS    R  +DGK++Q FQK+FV VQ+IL+QNR+LINEINQN ES+   N+ RNV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61 GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
          GLI+ELNNNIRRV  LY DLS SF +S +        G
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSG 98

[Close]

BLAST of CsaV3_2G001220 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-23
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1   MEGETLS----RGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNV 60
           MEG+  S    R ++DGK++Q FQK+FVQVQ+IL+QNR+LINEINQN ES+ A ++ RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
           GLIRELNNNIR V  LY DLS SF +S +        G
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTG 102

[Close]

BLAST of CsaV3_2G001220 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 4   ETLSRGEIDGKMVQRFQKNFVQVQNILEQNRMLINEINQNQESRMAGNVSRNVGLIRELN 63
           E   +GE D  M +   +NF QVQ++L++NR LI ++N N +SRMA N+S+NV LI+ELN
Sbjct: 15  EEAEQGE-DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELN 74

Query: 64  NNIRRVVDLYADLSTSFTKSNEHGDSAAKPG 95
            NI +VV++Y+DL+TSF+ S  HG      G
Sbjct: 75  GNISKVVNMYSDLNTSFS-SGFHGGKNGHDG 103

The following BLAST results are available for this feature:

BLAST of CsaV3_2G001220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60512.1	4.4e-46	100.00	hypothetical protein Csa_019281 [Cucumis sativus]	[more]
KAA0061471.1	1.0e-42	95.00	protein ELF4-LIKE 3-like [Cucumis melo var. makuwa] >TYK10803.1 protein ELF4-LIK...	[more]
XP_038890489.1	1.3e-34	77.57	protein ELF4-LIKE 3-like [Benincasa hispida]	[more]
XP_022946747.1	8.0e-32	74.31	protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE ...	[more]
XP_023521403.1	3.1e-31	73.39	protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1...	[more]

BLAST of CsaV3_2G001220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8F5	1.5e-25	59.26	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	2.7e-22	58.16	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	3.5e-22	58.16	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
O04211	1.6e-14	48.35	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	6.9e-10	42.17	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]

BLAST of CsaV3_2G001220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL2	2.1e-46	100.00	Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000210 PE=3 S...	[more]
A0A5D3CFW0	4.9e-43	95.00	Protein ELF4-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1KJ14	3.9e-32	74.31	protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1	[more]
A0A6J1G4K6	3.9e-32	74.31	protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1	[more]
A0A1U7WX74	6.2e-30	72.12	protein ELF4-LIKE 3-like OS=Nicotiana sylvestris OX=4096 GN=LOC104232936 PE=3 SV...	[more]

BLAST of CsaV3_2G001220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06255.1	1.1e-26	59.26	ELF4-like 3	[more]
AT1G17455.1	1.9e-23	58.16	ELF4-like 4	[more]
AT1G17455.2	1.9e-23	58.16	ELF4-like 4	[more]
AT1G72630.1	2.5e-23	58.16	ELF4-like 2	[more]
AT2G40080.1	1.1e-15	48.35	Protein of unknown function (DUF1313)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 11..89 e-value: 3.7E-36 score: 122.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..100
None	No IPR available	PANTHER	PTHR33469:SF17	PROTEIN ELF4-LIKE 3-LIKE	coord: 1..100
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G001220.1	CsaV3_2G001220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042753	positive regulation of circadian rhythm