CsaV3_1G046330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G046330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCOX assembly mitochondrial protein
Locationchr1: 32146557 .. 32146918 (-)
RNA-Seq ExpressionCsaV3_1G046330
SyntenyCsaV3_1G046330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCAGTGTAGAAAGATGGGAAAGCTGTAGATTGGGGATCGCATCGGGGAAGATGGATTAA

mRNA sequence

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGATCCTTGAAATCAGTGTAGAAAGATGGGAAAGCTGTAGATTGGGGATCGCATCGGGGAAGATGGATTAA

Coding sequence (CDS)

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGATCCTTGAAATCAGTGTAGAAAGATGGGAAAGCTGTAGATTGGGGATCGCATCGGGGAAGATGGATTAA

Protein sequence

MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAILEISVERWESCRLGIASGKMD*
Homology
BLAST of CsaV3_1G046330 vs. NCBI nr
Match: KAE8653663.1 (hypothetical protein Csa_007602 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AILEISVERWESCRLGIASGKMD 84
          AILEISVERWESCRLGIASGKMD
Sbjct: 61 AILEISVERWESCRLGIASGKMD 83

BLAST of CsaV3_1G046330 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.8e-27
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. NCBI nr
Match: XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 uncharacterized protein E6C27_scaffold110G00780 [Cucumis melo var. makuwa] >TYK12262.1 uncharacterized protein E5676_scaffold302G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP G + + GDGGC+RLEQALRECHKR+PEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 6  MLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSEAE 65

Query: 61 AI 63
          A+
Sbjct: 66 AV 67

BLAST of CsaV3_1G046330 vs. NCBI nr
Match: XP_022142592.1 (uncharacterized protein LOC111012670 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MLPMGESPL--GGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
          MLP GE+P+  GG GGC+RLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14 MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61 AEAI 63
          AEA+
Sbjct: 74 AEAV 77

BLAST of CsaV3_1G046330 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.8e-22
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MLPMGESPL--GGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
          MLP GE+P+  GG GGC+RLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14 MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61 AEAI 63
          AEA+
Sbjct: 74 AEAV 77

BLAST of CsaV3_1G046330 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AI 63
          A+
Sbjct: 61 AV 62

BLAST of CsaV3_1G046330 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-16
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 15 CDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAI 63
          CDRLE+AL +CH+R+PEGPARRS CRHLN++ AEC+VA ACP E+EA+
Sbjct: 34 CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAV 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653663.13.0e-40100.00hypothetical protein Csa_007602 [Cucumis sativus][more]
XP_004145445.13.8e-2798.39uncharacterized protein LOC101219184 [Cucumis sativus][more]
XP_008459043.11.1e-2388.71PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 unc... [more]
XP_038893663.12.8e-2285.48uncharacterized protein LOC120082530 [Benincasa hispida][more]
XP_022142592.11.8e-2181.25uncharacterized protein LOC111012670 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYC11.8e-2798.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1[more]
A0A5D3CLT35.5e-2488.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C8S85.5e-2488.71uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=... [more]
A0A6J1CN748.8e-2281.25uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1K2P51.5e-2177.42uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... [more]
Match NameE-valueIdentityDescription
AT1G31175.11.4e-1670.83unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G046330.1CsaV3_1G046330.1mRNA